RNA–Protein interactions for RNA: ENST00000554534.5

PCNX4-208, Transcript of pecanex 4, humanhuman

TSL 3

Gene PCNX4, Length 357 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX4-208ENST00000554534 NISCHQ9Y2I1 1504 aa16.91■□□□□ 0.3
PCNX4-208ENST00000554534 ABCC9O60706 1549 aa15.53■□□□□ 0.08
PCNX4-208ENST00000554534 CCDC180Q9P1Z9 1646 aa15.14■□□□□ 0.01
PCNX4-208ENST00000554534 DNAJC5BQ9UF47 199 aa14.81□□□□□ -0.04
PCNX4-208ENST00000554534 DCAF8L2P0C7V8 631 aa14.63□□□□□ -0.07
PCNX4-208ENST00000554534 PABPN1Q86U42 306 aaKnown RBP eCLIP14.54□□□□□ -0.08
PCNX4-208ENST00000554534 RB1CC1Q8TDY2 1594 aa14.54□□□□□ -0.08
PCNX4-208ENST00000554534 NACADO15069 1562 aa14.37□□□□□ -0.11
PCNX4-208ENST00000554534 UNC13AQ9UPW8 1703 aa14.33□□□□□ -0.12
PCNX4-208ENST00000554534 BICRAQ9NZM4 1560 aa14.21□□□□□ -0.14
PCNX4-208ENST00000554534 MYO15BQ96JP2 1530 aa14□□□□□ -0.17
PCNX4-208ENST00000554534 SCRIBQ14160 1630 aa13.98□□□□□ -0.17
PCNX4-208ENST00000554534 CC2D2AQ9P2K1 1620 aa13.95□□□□□ -0.18
PCNX4-208ENST00000554534 ZCCHC6Q5VYS8 1495 aaKnown RBP13.94□□□□□ -0.18
PCNX4-208ENST00000554534 CECR2Q9BXF3 1484 aa13.93□□□□□ -0.18
PCNX4-208ENST00000554534 EIF4G1Q04637 1599 aaKnown RBP13.83□□□□□ -0.19
PCNX4-208ENST00000554534 DCAF1Q9Y4B6 1507 aa13.81□□□□□ -0.2
PCNX4-208ENST00000554534 SHROOM4Q9ULL8 1493 aa13.72□□□□□ -0.21
PCNX4-208ENST00000554534 DNAJC5Q9H3Z4 198 aa13.57□□□□□ -0.24
PCNX4-208ENST00000554534 ERCC6Q03468 1493 aa13.36□□□□□ -0.27
PCNX4-208ENST00000554534 NESP48681 1621 aa13.32□□□□□ -0.28
PCNX4-208ENST00000554534 NCAPD3P42695 1498 aa13.29□□□□□ -0.28
PCNX4-208ENST00000554534 ATAD2BQ9ULI0 1458 aa13.29□□□□□ -0.28
PCNX4-208ENST00000554534 CUX2O14529 1486 aa13.25□□□□□ -0.29
PCNX4-208ENST00000554534 SMARCA4P51532 1647 aa13.23□□□□□ -0.29
PCNX4-208ENST00000554534 SMARCA2P51531 1590 aa13.17□□□□□ -0.3
PCNX4-208ENST00000554534 BAZ1BQ9UIG0 1483 aaKnown RBP13.15□□□□□ -0.3
PCNX4-208ENST00000554534 HMGXB3Q12766 1538 aa13.13□□□□□ -0.31
PCNX4-208ENST00000554534 MROH2BQ7Z745 1585 aa13.11□□□□□ -0.31
PCNX4-208ENST00000554534 KIF21AQ7Z4S6 1674 aa13.09□□□□□ -0.31
PCNX4-208ENST00000554534 BAZ1AQ9NRL2 1556 aaPredicted RBP13.08□□□□□ -0.32
PCNX4-208ENST00000554534 TRIM41Q8WV44 630 aa13.08□□□□□ -0.32
PCNX4-208ENST00000554534 THOC2Q8NI27 1593 aaKnown RBP13.07□□□□□ -0.32
PCNX4-208ENST00000554534 LAMC3Q9Y6N6 1575 aa13□□□□□ -0.33
PCNX4-208ENST00000554534 PEG3Q9GZU2 1588 aa12.99□□□□□ -0.33
PCNX4-208ENST00000554534 WIZO95785 1651 aa12.98□□□□□ -0.33
PCNX4-208ENST00000554534 PDS5BQ9NTI5 1447 aa12.96□□□□□ -0.33
PCNX4-208ENST00000554534 CADPSQ9ULU8 1353 aa12.94□□□□□ -0.34
PCNX4-208ENST00000554534 MRC2Q9UBG0 1479 aa12.88□□□□□ -0.35
PCNX4-208ENST00000554534 WDR62O43379 1518 aa12.83□□□□□ -0.36
PCNX4-208ENST00000554534 FANCD2Q9BXW9 1451 aa12.81□□□□□ -0.36
PCNX4-208ENST00000554534 CEP164Q9UPV0 1460 aa12.8□□□□□ -0.36
PCNX4-208ENST00000554534 OSCARQ8IYS5 282 aa12.76□□□□□ -0.37
PCNX4-208ENST00000554534 RSF1Q96T23 1441 aaPredicted RBP12.75□□□□□ -0.37
PCNX4-208ENST00000554534 URB2Q14146 1524 aaKnown RBP12.74□□□□□ -0.37
PCNX4-208ENST00000554534 CFTRP13569 1480 aa12.72□□□□□ -0.37
PCNX4-208ENST00000554534 TOP2AP11388 1531 aaKnown RBP12.67□□□□□ -0.38
PCNX4-208ENST00000554534 ZNF608Q9ULD9 1512 aaPredicted RBP12.66□□□□□ -0.38
PCNX4-208ENST00000554534 CCDC88BA6NC98 1476 aa12.62□□□□□ -0.39
PCNX4-208ENST00000554534 RIMBP3CA6NJZ7 1639 aa12.61□□□□□ -0.39
PCNX4-208ENST00000554534 RIMBP3BA6NNM3 1639 aa12.61□□□□□ -0.39
PCNX4-208ENST00000554534 RIMBP3Q9UFD9 1639 aa12.61□□□□□ -0.39
PCNX4-208ENST00000554534 CYB5RLQ6IPT4 315 aa12.58□□□□□ -0.4
PCNX4-208ENST00000554534 FBLN2P98095 1184 aa12.57□□□□□ -0.4
PCNX4-208ENST00000554534 PRDM2Q13029 1718 aa12.56□□□□□ -0.4
PCNX4-208ENST00000554534 AQRO60306 1485 aaKnown RBP eCLIP12.54□□□□□ -0.4
PCNX4-208ENST00000554534 TOPBP1Q92547 1522 aa12.54□□□□□ -0.4
PCNX4-208ENST00000554534 IFT140Q96RY7 1462 aa12.53□□□□□ -0.4
PCNX4-208ENST00000554534 ARHGEF11O15085 1522 aa12.52□□□□□ -0.41
PCNX4-208ENST00000554534 TRHP20396 242 aaPredicted RBP12.51□□□□□ -0.41
PCNX4-208ENST00000554534 EIF4G3O43432 1585 aaKnown RBP12.5□□□□□ -0.41
PCNX4-208ENST00000554534 CHD1O14646 1710 aa12.49□□□□□ -0.41
PCNX4-208ENST00000554534 RAD54L2Q9Y4B4 1467 aa12.47□□□□□ -0.41
PCNX4-208ENST00000554534 TARBP1Q13395 1621 aaKnown RBP12.44□□□□□ -0.42
PCNX4-208ENST00000554534 TDRD9Q8NDG6 1382 aaKnown RBP12.44□□□□□ -0.42
PCNX4-208ENST00000554534 DNMBPQ6XZF7 1577 aa12.44□□□□□ -0.42
PCNX4-208ENST00000554534 POLA1P09884 1462 aaPredicted RBP12.4□□□□□ -0.42
PCNX4-208ENST00000554534 ARAP1Q96P48 1450 aa12.4□□□□□ -0.42
PCNX4-208ENST00000554534 ABCC8Q09428 1581 aa12.39□□□□□ -0.43
PCNX4-208ENST00000554534 SOGA1O94964 1423 aa12.38□□□□□ -0.43
PCNX4-208ENST00000554534 CHMP7Q8WUX9 453 aaPredicted RBP12.35□□□□□ -0.43
PCNX4-208ENST00000554534 SNAPC4Q5SXM2 1469 aa12.34□□□□□ -0.43
PCNX4-208ENST00000554534 FGD5Q6ZNL6 1462 aa12.33□□□□□ -0.44
PCNX4-208ENST00000554534 CUX1P39880 1505 aa12.31□□□□□ -0.44
PCNX4-208ENST00000554534 SUPT5HO00267 1087 aaKnown RBP12.28□□□□□ -0.44
PCNX4-208ENST00000554534 CLASP1Q7Z460 1538 aa12.26□□□□□ -0.45
PCNX4-208ENST00000554534 GRIN2BQ13224 1484 aa12.22□□□□□ -0.45
PCNX4-208ENST00000554534 AEBP2Q6ZN18 517 aaPredicted RBP12.22□□□□□ -0.45
PCNX4-208ENST00000554534 SYNJ1O43426 1573 aa12.22□□□□□ -0.45
PCNX4-208ENST00000554534 PBRM1Q86U86 1689 aa12.21□□□□□ -0.45
PCNX4-208ENST00000554534 ERCC6L2Q5T890 1561 aa12.2□□□□□ -0.46
PCNX4-208ENST00000554534 GAPVD1Q14C86 1478 aa12.2□□□□□ -0.46
PCNX4-208ENST00000554534 SYNJ2O15056 1496 aa12.19□□□□□ -0.46
PCNX4-208ENST00000554534 MAGI1Q96QZ7 1491 aaPredicted RBP12.19□□□□□ -0.46
PCNX4-208ENST00000554534 WDR97A6NE52 1622 aa12.19□□□□□ -0.46
PCNX4-208ENST00000554534 ABCA5Q8WWZ7 1642 aa12.11□□□□□ -0.47
PCNX4-208ENST00000554534 ABCA10Q8WWZ4 1543 aa12.11□□□□□ -0.47
PCNX4-208ENST00000554534 CEP170Q5SW79 1584 aa12.09□□□□□ -0.47
PCNX4-208ENST00000554534 GRIN2AQ12879 1464 aa12.08□□□□□ -0.47
PCNX4-208ENST00000554534 WRNQ14191 1432 aaPredicted RBP eCLIP12.05□□□□□ -0.48
PCNX4-208ENST00000554534 ADAMTS12P58397 1594 aa12.04□□□□□ -0.48
PCNX4-208ENST00000554534 TTBK1Q5TCY1 1321 aaPredicted RBP12.02□□□□□ -0.49
PCNX4-208ENST00000554534 NUP160Q12769 1436 aa12.02□□□□□ -0.49
PCNX4-208ENST00000554534 PRG4Q92954 1404 aaPredicted RBP12.01□□□□□ -0.49
PCNX4-208ENST00000554534 JPH4Q96JJ6 628 aa12□□□□□ -0.49
PCNX4-208ENST00000554534 FHAD1B1AJZ9 1412 aa12□□□□□ -0.49
PCNX4-208ENST00000554534 TOP2BQ02880 1626 aa12□□□□□ -0.49
PCNX4-208ENST00000554534 BIVM-ERCC5R4GMW8 1640 aa12□□□□□ -0.49
PCNX4-208ENST00000554534 KIF13AQ9H1H9 1805 aa12□□□□□ -0.49
PCNX4-208ENST00000554534 SHROOM2Q13796 1616 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms