RNA–Protein interactions for RNA: ENST00000554290.1

CPSF2-203, Transcript of cleavage and polyadenylation specific factor 2, humanhuman

TSL 4

Gene CPSF2, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF2-203ENST00000554290 NISCHQ9Y2I1 1504 aa46.65■■■■■ 5.06
CPSF2-203ENST00000554290 CCDC180Q9P1Z9 1646 aa41.77■■■■■ 4.28
CPSF2-203ENST00000554290 ABCC9O60706 1549 aa41.67■■■■■ 4.26
CPSF2-203ENST00000554290 RB1CC1Q8TDY2 1594 aa39.75■■■■□ 3.95
CPSF2-203ENST00000554290 NACADO15069 1562 aa39.5■■■■□ 3.91
CPSF2-203ENST00000554290 DCAF8L2P0C7V8 631 aa39.42■■■■□ 3.9
CPSF2-203ENST00000554290 MYO15BQ96JP2 1530 aa39.02■■■■□ 3.84
CPSF2-203ENST00000554290 DNAJC5BQ9UF47 199 aa38.96■■■■□ 3.83
CPSF2-203ENST00000554290 PABPN1Q86U42 306 aaKnown RBP eCLIP38.85■■■■□ 3.81
CPSF2-203ENST00000554290 UNC13AQ9UPW8 1703 aa38.7■■■■□ 3.79
CPSF2-203ENST00000554290 ZCCHC6Q5VYS8 1495 aaKnown RBP38.67■■■■□ 3.78
CPSF2-203ENST00000554290 DCAF1Q9Y4B6 1507 aa38.56■■■■□ 3.76
CPSF2-203ENST00000554290 BICRAQ9NZM4 1560 aa38.51■■■■□ 3.76
CPSF2-203ENST00000554290 SHROOM4Q9ULL8 1493 aa38.1■■■■□ 3.69
CPSF2-203ENST00000554290 SCRIBQ14160 1630 aa38.06■■■■□ 3.68
CPSF2-203ENST00000554290 CC2D2AQ9P2K1 1620 aa37.61■■■■□ 3.61
CPSF2-203ENST00000554290 EIF4G1Q04637 1599 aaKnown RBP37.59■■■■□ 3.61
CPSF2-203ENST00000554290 CECR2Q9BXF3 1484 aa37.54■■■■□ 3.6
CPSF2-203ENST00000554290 NCAPD3P42695 1498 aa36.49■■■■□ 3.43
CPSF2-203ENST00000554290 ATAD2BQ9ULI0 1458 aa36.37■■■■□ 3.41
CPSF2-203ENST00000554290 SMARCA4P51532 1647 aa36.34■■■■□ 3.41
CPSF2-203ENST00000554290 SMARCA2P51531 1590 aa36.3■■■■□ 3.4
CPSF2-203ENST00000554290 BAZ1AQ9NRL2 1556 aaPredicted RBP36.23■■■■□ 3.39
CPSF2-203ENST00000554290 HMGXB3Q12766 1538 aa36.19■■■■□ 3.38
CPSF2-203ENST00000554290 BAZ1BQ9UIG0 1483 aaKnown RBP36.05■■■■□ 3.36
CPSF2-203ENST00000554290 ERCC6Q03468 1493 aa36.01■■■■□ 3.36
CPSF2-203ENST00000554290 PEG3Q9GZU2 1588 aa35.99■■■■□ 3.35
CPSF2-203ENST00000554290 MROH2BQ7Z745 1585 aa35.93■■■■□ 3.34
CPSF2-203ENST00000554290 CUX2O14529 1486 aa35.88■■■■□ 3.33
CPSF2-203ENST00000554290 NESP48681 1621 aa35.81■■■■□ 3.32
CPSF2-203ENST00000554290 DNAJC5Q9H3Z4 198 aa35.74■■■■□ 3.31
CPSF2-203ENST00000554290 LAMC3Q9Y6N6 1575 aa35.62■■■■□ 3.29
CPSF2-203ENST00000554290 WIZO95785 1651 aa35.47■■■■□ 3.27
CPSF2-203ENST00000554290 PDS5BQ9NTI5 1447 aa35.47■■■■□ 3.27
CPSF2-203ENST00000554290 CADPSQ9ULU8 1353 aa35.4■■■■□ 3.26
CPSF2-203ENST00000554290 THOC2Q8NI27 1593 aaKnown RBP35.38■■■■□ 3.25
CPSF2-203ENST00000554290 KIF21AQ7Z4S6 1674 aa35.3■■■■□ 3.24
CPSF2-203ENST00000554290 RSF1Q96T23 1441 aaPredicted RBP35.28■■■■□ 3.24
CPSF2-203ENST00000554290 MRC2Q9UBG0 1479 aa35.11■■■■□ 3.21
CPSF2-203ENST00000554290 TOP2AP11388 1531 aaKnown RBP35.08■■■■□ 3.21
CPSF2-203ENST00000554290 CEP164Q9UPV0 1460 aa35.01■■■■□ 3.19
CPSF2-203ENST00000554290 CFTRP13569 1480 aa35■■■■□ 3.19
CPSF2-203ENST00000554290 WDR62O43379 1518 aa34.98■■■■□ 3.19
CPSF2-203ENST00000554290 FANCD2Q9BXW9 1451 aa34.97■■■■□ 3.19
CPSF2-203ENST00000554290 CCDC88BA6NC98 1476 aa34.7■■■■□ 3.15
CPSF2-203ENST00000554290 URB2Q14146 1524 aaKnown RBP34.65■■■■□ 3.14
CPSF2-203ENST00000554290 PRDM2Q13029 1718 aa34.55■■■■□ 3.12
CPSF2-203ENST00000554290 OSCARQ8IYS5 282 aa34.35■■■■□ 3.09
CPSF2-203ENST00000554290 ABCC8Q09428 1581 aa34.32■■■■□ 3.08
CPSF2-203ENST00000554290 IFT140Q96RY7 1462 aa34.31■■■■□ 3.08
CPSF2-203ENST00000554290 TOPBP1Q92547 1522 aa34.3■■■■□ 3.08
CPSF2-203ENST00000554290 TRIM41Q8WV44 630 aa34.24■■■■□ 3.07
CPSF2-203ENST00000554290 DNMBPQ6XZF7 1577 aa34.19■■■■□ 3.06
CPSF2-203ENST00000554290 ZNF608Q9ULD9 1512 aaPredicted RBP34.19■■■■□ 3.06
CPSF2-203ENST00000554290 EIF4G3O43432 1585 aaKnown RBP33.98■■■■□ 3.03
CPSF2-203ENST00000554290 POLA1P09884 1462 aaPredicted RBP33.96■■■■□ 3.03
CPSF2-203ENST00000554290 TARBP1Q13395 1621 aaKnown RBP33.96■■■■□ 3.03
CPSF2-203ENST00000554290 AQRO60306 1485 aaKnown RBP eCLIP33.93■■■■□ 3.02
CPSF2-203ENST00000554290 SUPT5HO00267 1087 aaKnown RBP33.88■■■■□ 3.01
CPSF2-203ENST00000554290 SOGA1O94964 1423 aa33.87■■■■□ 3.01
CPSF2-203ENST00000554290 RAD54L2Q9Y4B4 1467 aa33.83■■■■□ 3.01
CPSF2-203ENST00000554290 FGD5Q6ZNL6 1462 aa33.77■■■■□ 3
CPSF2-203ENST00000554290 TDRD9Q8NDG6 1382 aaKnown RBP33.77■■■■□ 3
CPSF2-203ENST00000554290 CUX1P39880 1505 aa33.75■■■□□ 2.99
CPSF2-203ENST00000554290 FBLN2P98095 1184 aa33.75■■■□□ 2.99
CPSF2-203ENST00000554290 RIMBP3CA6NJZ7 1639 aa33.75■■■□□ 2.99
CPSF2-203ENST00000554290 RIMBP3BA6NNM3 1639 aa33.75■■■□□ 2.99
CPSF2-203ENST00000554290 RIMBP3Q9UFD9 1639 aa33.75■■■□□ 2.99
CPSF2-203ENST00000554290 ARHGEF11O15085 1522 aa33.69■■■□□ 2.98
CPSF2-203ENST00000554290 CHD1O14646 1710 aa33.67■■■□□ 2.98
CPSF2-203ENST00000554290 WDR97A6NE52 1622 aa33.67■■■□□ 2.98
CPSF2-203ENST00000554290 SNAPC4Q5SXM2 1469 aa33.57■■■□□ 2.97
CPSF2-203ENST00000554290 GRIN2BQ13224 1484 aa33.55■■■□□ 2.96
CPSF2-203ENST00000554290 CHMP7Q8WUX9 453 aaPredicted RBP33.54■■■□□ 2.96
CPSF2-203ENST00000554290 MAGI1Q96QZ7 1491 aaPredicted RBP33.52■■■□□ 2.96
CPSF2-203ENST00000554290 CYB5RLQ6IPT4 315 aa33.51■■■□□ 2.95
CPSF2-203ENST00000554290 GAPVD1Q14C86 1478 aa33.44■■■□□ 2.94
CPSF2-203ENST00000554290 SYNJ2O15056 1496 aa33.41■■■□□ 2.94
CPSF2-203ENST00000554290 ABCA10Q8WWZ4 1543 aa33.41■■■□□ 2.94
CPSF2-203ENST00000554290 SYNJ1O43426 1573 aa33.38■■■□□ 2.93
CPSF2-203ENST00000554290 ARAP1Q96P48 1450 aa33.36■■■□□ 2.93
CPSF2-203ENST00000554290 WRNQ14191 1432 aaPredicted RBP eCLIP33.36■■■□□ 2.93
CPSF2-203ENST00000554290 CLASP1Q7Z460 1538 aa33.33■■■□□ 2.93
CPSF2-203ENST00000554290 PBRM1Q86U86 1689 aa33.32■■■□□ 2.92
CPSF2-203ENST00000554290 ABCA5Q8WWZ7 1642 aa33.29■■■□□ 2.92
CPSF2-203ENST00000554290 TOP2BQ02880 1626 aa33.25■■■□□ 2.91
CPSF2-203ENST00000554290 BIVM-ERCC5R4GMW8 1640 aa33.23■■■□□ 2.91
CPSF2-203ENST00000554290 TRHP20396 242 aaPredicted RBP33.12■■■□□ 2.89
CPSF2-203ENST00000554290 GRIN2AQ12879 1464 aa33.09■■■□□ 2.89
CPSF2-203ENST00000554290 ADAMTS12P58397 1594 aa33.04■■■□□ 2.88
CPSF2-203ENST00000554290 FHAD1B1AJZ9 1412 aa33.03■■■□□ 2.88
CPSF2-203ENST00000554290 ERICH3Q5RHP9 1530 aa33■■■□□ 2.87
CPSF2-203ENST00000554290 NUP160Q12769 1436 aa32.97■■■□□ 2.87
CPSF2-203ENST00000554290 CEP170Q5SW79 1584 aa32.92■■■□□ 2.86
CPSF2-203ENST00000554290 ERCC6L2Q5T890 1561 aa32.8■■■□□ 2.84
CPSF2-203ENST00000554290 SHROOM2Q13796 1616 aa32.77■■■□□ 2.84
CPSF2-203ENST00000554290 JPH4Q96JJ6 628 aa32.7■■■□□ 2.83
CPSF2-203ENST00000554290 KIF27Q86VH2 1401 aa32.68■■■□□ 2.82
CPSF2-203ENST00000554290 PRG4Q92954 1404 aaPredicted RBP32.68■■■□□ 2.82
CPSF2-203ENST00000554290 IGF1RP08069 1367 aa32.64■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 161.5 ms