RNA–Protein interactions for RNA: ENST00000554257.1

LINC00517-202, long intergenic non-protein coding RNA 517, humanhuman

TSL 2 BASIC

Gene LINC00517, Length 3,460 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00517-202ENST00000554257 NISCHQ9Y2I1 1504 aa16.52■□□□□ 0.23
LINC00517-202ENST00000554257 CCDC180Q9P1Z9 1646 aa14.71□□□□□ -0.05
LINC00517-202ENST00000554257 ZCCHC6Q5VYS8 1495 aaKnown RBP13.88□□□□□ -0.19
LINC00517-202ENST00000554257 DCAF1Q9Y4B6 1507 aa13.78□□□□□ -0.2
LINC00517-202ENST00000554257 ABCC9O60706 1549 aa13.77□□□□□ -0.21
LINC00517-202ENST00000554257 MYO15BQ96JP2 1530 aa13.72□□□□□ -0.21
LINC00517-202ENST00000554257 NACADO15069 1562 aa13.61□□□□□ -0.23
LINC00517-202ENST00000554257 UNC13AQ9UPW8 1703 aa13.54□□□□□ -0.24
LINC00517-202ENST00000554257 RB1CC1Q8TDY2 1594 aa13.51□□□□□ -0.25
LINC00517-202ENST00000554257 SCRIBQ14160 1630 aa13.27□□□□□ -0.28
LINC00517-202ENST00000554257 BICRAQ9NZM4 1560 aa13.27□□□□□ -0.29
LINC00517-202ENST00000554257 DCAF8L2P0C7V8 631 aa13.13□□□□□ -0.31
LINC00517-202ENST00000554257 SHROOM4Q9ULL8 1493 aa13.06□□□□□ -0.32
LINC00517-202ENST00000554257 SMARCA4P51532 1647 aa12.81□□□□□ -0.36
LINC00517-202ENST00000554257 CECR2Q9BXF3 1484 aa12.8□□□□□ -0.36
LINC00517-202ENST00000554257 PABPN1Q86U42 306 aaKnown RBP eCLIP12.79□□□□□ -0.36
LINC00517-202ENST00000554257 EIF4G1Q04637 1599 aaKnown RBP12.77□□□□□ -0.37
LINC00517-202ENST00000554257 PEG3Q9GZU2 1588 aa12.77□□□□□ -0.37
LINC00517-202ENST00000554257 BAZ1AQ9NRL2 1556 aaPredicted RBP12.75□□□□□ -0.37
LINC00517-202ENST00000554257 MROH2BQ7Z745 1585 aa12.74□□□□□ -0.37
LINC00517-202ENST00000554257 WIZO95785 1651 aa12.68□□□□□ -0.38
LINC00517-202ENST00000554257 CC2D2AQ9P2K1 1620 aa12.65□□□□□ -0.38
LINC00517-202ENST00000554257 RSF1Q96T23 1441 aaPredicted RBP12.65□□□□□ -0.39
LINC00517-202ENST00000554257 HMGXB3Q12766 1538 aa12.56□□□□□ -0.4
LINC00517-202ENST00000554257 ATAD2BQ9ULI0 1458 aa12.56□□□□□ -0.4
LINC00517-202ENST00000554257 SMARCA2P51531 1590 aa12.56□□□□□ -0.4
LINC00517-202ENST00000554257 TOP2AP11388 1531 aaKnown RBP12.52□□□□□ -0.41
LINC00517-202ENST00000554257 NCAPD3P42695 1498 aa12.51□□□□□ -0.41
LINC00517-202ENST00000554257 DNAJC5BQ9UF47 199 aa12.4□□□□□ -0.42
LINC00517-202ENST00000554257 BAZ1BQ9UIG0 1483 aaKnown RBP12.39□□□□□ -0.43
LINC00517-202ENST00000554257 PRDM2Q13029 1718 aa12.39□□□□□ -0.43
LINC00517-202ENST00000554257 CCDC88BA6NC98 1476 aa12.31□□□□□ -0.44
LINC00517-202ENST00000554257 SUPT5HO00267 1087 aaKnown RBP12.2□□□□□ -0.46
LINC00517-202ENST00000554257 LAMC3Q9Y6N6 1575 aa12.18□□□□□ -0.46
LINC00517-202ENST00000554257 CFTRP13569 1480 aa12.17□□□□□ -0.46
LINC00517-202ENST00000554257 KIF21AQ7Z4S6 1674 aa12.15□□□□□ -0.47
LINC00517-202ENST00000554257 NESP48681 1621 aa12.1□□□□□ -0.47
LINC00517-202ENST00000554257 CADPSQ9ULU8 1353 aa12.06□□□□□ -0.48
LINC00517-202ENST00000554257 THOC2Q8NI27 1593 aaKnown RBP12.04□□□□□ -0.48
LINC00517-202ENST00000554257 BIVM-ERCC5R4GMW8 1640 aa12.03□□□□□ -0.48
LINC00517-202ENST00000554257 SYNJ1O43426 1573 aa11.98□□□□□ -0.49
LINC00517-202ENST00000554257 ABCC8Q09428 1581 aa11.97□□□□□ -0.49
LINC00517-202ENST00000554257 FANCD2Q9BXW9 1451 aa11.96□□□□□ -0.49
LINC00517-202ENST00000554257 TOP2BQ02880 1626 aa11.96□□□□□ -0.5
LINC00517-202ENST00000554257 WDR97A6NE52 1622 aa11.95□□□□□ -0.5
LINC00517-202ENST00000554257 CUX1P39880 1505 aa11.95□□□□□ -0.5
LINC00517-202ENST00000554257 WDR62O43379 1518 aa11.94□□□□□ -0.5
LINC00517-202ENST00000554257 URB2Q14146 1524 aaKnown RBP11.92□□□□□ -0.5
LINC00517-202ENST00000554257 DNMBPQ6XZF7 1577 aa11.92□□□□□ -0.5
LINC00517-202ENST00000554257 CEP164Q9UPV0 1460 aa11.9□□□□□ -0.51
LINC00517-202ENST00000554257 PDS5BQ9NTI5 1447 aa11.89□□□□□ -0.51
LINC00517-202ENST00000554257 TOPBP1Q92547 1522 aa11.87□□□□□ -0.51
LINC00517-202ENST00000554257 MRC2Q9UBG0 1479 aa11.86□□□□□ -0.51
LINC00517-202ENST00000554257 TARBP1Q13395 1621 aaKnown RBP11.86□□□□□ -0.51
LINC00517-202ENST00000554257 WRNQ14191 1432 aaPredicted RBP eCLIP11.82□□□□□ -0.52
LINC00517-202ENST00000554257 CUX2O14529 1486 aa11.79□□□□□ -0.52
LINC00517-202ENST00000554257 POLA1P09884 1462 aaPredicted RBP11.78□□□□□ -0.52
LINC00517-202ENST00000554257 ABCA5Q8WWZ7 1642 aa11.77□□□□□ -0.52
LINC00517-202ENST00000554257 FGD5Q6ZNL6 1462 aa11.77□□□□□ -0.53
LINC00517-202ENST00000554257 ERCC6Q03468 1493 aa11.74□□□□□ -0.53
LINC00517-202ENST00000554257 CHIC1Q5VXU3 224 aa11.74□□□□□ -0.53
LINC00517-202ENST00000554257 PBRM1Q86U86 1689 aa11.74□□□□□ -0.53
LINC00517-202ENST00000554257 ABCA10Q8WWZ4 1543 aa11.72□□□□□ -0.53
LINC00517-202ENST00000554257 EIF4G3O43432 1585 aaKnown RBP11.69□□□□□ -0.54
LINC00517-202ENST00000554257 RAD54L2Q9Y4B4 1467 aa11.67□□□□□ -0.54
LINC00517-202ENST00000554257 IFT140Q96RY7 1462 aa11.66□□□□□ -0.54
LINC00517-202ENST00000554257 RUSC2Q8N2Y8 1516 aa11.64□□□□□ -0.55
LINC00517-202ENST00000554257 ZNF608Q9ULD9 1512 aaPredicted RBP11.62□□□□□ -0.55
LINC00517-202ENST00000554257 SOGA1O94964 1423 aa11.61□□□□□ -0.55
LINC00517-202ENST00000554257 CUL7Q14999 1698 aa11.6□□□□□ -0.55
LINC00517-202ENST00000554257 ERICH3Q5RHP9 1530 aa11.6□□□□□ -0.55
LINC00517-202ENST00000554257 ADAMTS12P58397 1594 aa11.58□□□□□ -0.56
LINC00517-202ENST00000554257 KIF21BO75037 1637 aa11.58□□□□□ -0.56
LINC00517-202ENST00000554257 CHD1O14646 1710 aa11.54□□□□□ -0.56
LINC00517-202ENST00000554257 EEA1Q15075 1411 aa11.53□□□□□ -0.56
LINC00517-202ENST00000554257 GAPVD1Q14C86 1478 aa11.53□□□□□ -0.56
LINC00517-202ENST00000554257 TRIM41Q8WV44 630 aa11.53□□□□□ -0.56
LINC00517-202ENST00000554257 PRXQ9BXM0 1461 aa11.52□□□□□ -0.56
LINC00517-202ENST00000554257 AQRO60306 1485 aaKnown RBP eCLIP11.51□□□□□ -0.57
LINC00517-202ENST00000554257 CTTNBP2Q8WZ74 1663 aa11.51□□□□□ -0.57
LINC00517-202ENST00000554257 KIF27Q86VH2 1401 aa11.5□□□□□ -0.57
LINC00517-202ENST00000554257 IGF1RP08069 1367 aa11.49□□□□□ -0.57
LINC00517-202ENST00000554257 GRIN2BQ13224 1484 aa11.49□□□□□ -0.57
LINC00517-202ENST00000554257 MAGI1Q96QZ7 1491 aaPredicted RBP11.47□□□□□ -0.57
LINC00517-202ENST00000554257 TDRD9Q8NDG6 1382 aaKnown RBP11.47□□□□□ -0.57
LINC00517-202ENST00000554257 SNAPC4Q5SXM2 1469 aa11.46□□□□□ -0.58
LINC00517-202ENST00000554257 CEP170Q5SW79 1584 aa11.44□□□□□ -0.58
LINC00517-202ENST00000554257 RAPGEF2Q9Y4G8 1499 aa11.41□□□□□ -0.58
LINC00517-202ENST00000554257 SHROOM2Q13796 1616 aa11.41□□□□□ -0.58
LINC00517-202ENST00000554257 SYNJ2O15056 1496 aa11.41□□□□□ -0.58
LINC00517-202ENST00000554257 FHAD1B1AJZ9 1412 aa11.4□□□□□ -0.58
LINC00517-202ENST00000554257 CLASP1Q7Z460 1538 aa11.4□□□□□ -0.59
LINC00517-202ENST00000554257 GRIN2AQ12879 1464 aa11.39□□□□□ -0.59
LINC00517-202ENST00000554257 NUP160Q12769 1436 aa11.37□□□□□ -0.59
LINC00517-202ENST00000554257 SAMD9Q5K651 1589 aa11.35□□□□□ -0.59
LINC00517-202ENST00000554257 CARMIL1Q5VZK9 1371 aa11.35□□□□□ -0.59
LINC00517-202ENST00000554257 GOLGA3Q08378 1498 aa11.35□□□□□ -0.59
LINC00517-202ENST00000554257 CSRNP3Q8WYN3 585 aa11.34□□□□□ -0.59
LINC00517-202ENST00000554257 IQGAP2Q13576 1575 aa11.3□□□□□ -0.6
LINC00517-202ENST00000554257 UGGT2Q9NYU1 1516 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms