RNA–Protein interactions for RNA: ENST00000554170.1

XRCC3-206, Transcript of X-ray repair cross complementing 3, humanhuman

TSL 4

Gene XRCC3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-206ENST00000554170 NISCHQ9Y2I1 1504 aa31.65■■■□□ 2.66
XRCC3-206ENST00000554170 ABCC9O60706 1549 aa28.74■■■□□ 2.19
XRCC3-206ENST00000554170 CCDC180Q9P1Z9 1646 aa28.58■■■□□ 2.17
XRCC3-206ENST00000554170 RB1CC1Q8TDY2 1594 aa27.29■■□□□ 1.96
XRCC3-206ENST00000554170 DNAJC5BQ9UF47 199 aa27.18■■□□□ 1.94
XRCC3-206ENST00000554170 NACADO15069 1562 aa27.05■■□□□ 1.92
XRCC3-206ENST00000554170 UNC13AQ9UPW8 1703 aa26.76■■□□□ 1.87
XRCC3-206ENST00000554170 DCAF8L2P0C7V8 631 aa26.74■■□□□ 1.87
XRCC3-206ENST00000554170 PABPN1Q86U42 306 aaKnown RBP eCLIP26.69■■□□□ 1.86
XRCC3-206ENST00000554170 MYO15BQ96JP2 1530 aa26.59■■□□□ 1.85
XRCC3-206ENST00000554170 BICRAQ9NZM4 1560 aa26.52■■□□□ 1.84
XRCC3-206ENST00000554170 ZCCHC6Q5VYS8 1495 aaKnown RBP26.18■■□□□ 1.78
XRCC3-206ENST00000554170 DCAF1Q9Y4B6 1507 aa26.15■■□□□ 1.78
XRCC3-206ENST00000554170 SHROOM4Q9ULL8 1493 aa26.14■■□□□ 1.78
XRCC3-206ENST00000554170 CC2D2AQ9P2K1 1620 aa26■■□□□ 1.75
XRCC3-206ENST00000554170 SCRIBQ14160 1630 aa25.98■■□□□ 1.75
XRCC3-206ENST00000554170 CECR2Q9BXF3 1484 aa25.93■■□□□ 1.74
XRCC3-206ENST00000554170 EIF4G1Q04637 1599 aaKnown RBP25.88■■□□□ 1.73
XRCC3-206ENST00000554170 DNAJC5Q9H3Z4 198 aa25.16■■□□□ 1.62
XRCC3-206ENST00000554170 NCAPD3P42695 1498 aa24.95■■□□□ 1.58
XRCC3-206ENST00000554170 CUX2O14529 1486 aa24.92■■□□□ 1.58
XRCC3-206ENST00000554170 ERCC6Q03468 1493 aa24.85■■□□□ 1.57
XRCC3-206ENST00000554170 ATAD2BQ9ULI0 1458 aa24.83■■□□□ 1.56
XRCC3-206ENST00000554170 SMARCA4P51532 1647 aa24.78■■□□□ 1.56
XRCC3-206ENST00000554170 SMARCA2P51531 1590 aa24.77■■□□□ 1.56
XRCC3-206ENST00000554170 HMGXB3Q12766 1538 aa24.76■■□□□ 1.55
XRCC3-206ENST00000554170 NESP48681 1621 aa24.64■■□□□ 1.53
XRCC3-206ENST00000554170 BAZ1AQ9NRL2 1556 aaPredicted RBP24.59■■□□□ 1.53
XRCC3-206ENST00000554170 BAZ1BQ9UIG0 1483 aaKnown RBP24.58■■□□□ 1.52
XRCC3-206ENST00000554170 PEG3Q9GZU2 1588 aa24.54■■□□□ 1.52
XRCC3-206ENST00000554170 THOC2Q8NI27 1593 aaKnown RBP24.48■■□□□ 1.51
XRCC3-206ENST00000554170 LAMC3Q9Y6N6 1575 aa24.45■■□□□ 1.5
XRCC3-206ENST00000554170 MROH2BQ7Z745 1585 aa24.37■■□□□ 1.49
XRCC3-206ENST00000554170 KIF21AQ7Z4S6 1674 aa24.37■■□□□ 1.49
XRCC3-206ENST00000554170 PDS5BQ9NTI5 1447 aa24.28■■□□□ 1.48
XRCC3-206ENST00000554170 CADPSQ9ULU8 1353 aa24.16■■□□□ 1.46
XRCC3-206ENST00000554170 MRC2Q9UBG0 1479 aa24.11■■□□□ 1.45
XRCC3-206ENST00000554170 WIZO95785 1651 aa24.11■■□□□ 1.45
XRCC3-206ENST00000554170 WDR62O43379 1518 aa24.08■■□□□ 1.45
XRCC3-206ENST00000554170 CEP164Q9UPV0 1460 aa23.95■■□□□ 1.42
XRCC3-206ENST00000554170 TRIM41Q8WV44 630 aa23.92■■□□□ 1.42
XRCC3-206ENST00000554170 FANCD2Q9BXW9 1451 aa23.89■■□□□ 1.42
XRCC3-206ENST00000554170 CFTRP13569 1480 aa23.85■■□□□ 1.41
XRCC3-206ENST00000554170 TOP2AP11388 1531 aaKnown RBP23.77■■□□□ 1.4
XRCC3-206ENST00000554170 RSF1Q96T23 1441 aaPredicted RBP23.76■■□□□ 1.39
XRCC3-206ENST00000554170 URB2Q14146 1524 aaKnown RBP23.72■■□□□ 1.39
XRCC3-206ENST00000554170 PRDM2Q13029 1718 aa23.7■■□□□ 1.38
XRCC3-206ENST00000554170 OSCARQ8IYS5 282 aa23.69■■□□□ 1.38
XRCC3-206ENST00000554170 IFT140Q96RY7 1462 aa23.48■■□□□ 1.35
XRCC3-206ENST00000554170 RIMBP3CA6NJZ7 1639 aa23.48■■□□□ 1.35
XRCC3-206ENST00000554170 RIMBP3BA6NNM3 1639 aa23.48■■□□□ 1.35
XRCC3-206ENST00000554170 RIMBP3Q9UFD9 1639 aa23.48■■□□□ 1.35
XRCC3-206ENST00000554170 CCDC88BA6NC98 1476 aa23.47■■□□□ 1.35
XRCC3-206ENST00000554170 ZNF608Q9ULD9 1512 aaPredicted RBP23.47■■□□□ 1.35
XRCC3-206ENST00000554170 TOPBP1Q92547 1522 aa23.43■■□□□ 1.34
XRCC3-206ENST00000554170 EIF4G3O43432 1585 aaKnown RBP23.36■■□□□ 1.33
XRCC3-206ENST00000554170 ABCC8Q09428 1581 aa23.35■■□□□ 1.33
XRCC3-206ENST00000554170 ARHGEF11O15085 1522 aa23.35■■□□□ 1.33
XRCC3-206ENST00000554170 DNMBPQ6XZF7 1577 aa23.33■■□□□ 1.33
XRCC3-206ENST00000554170 CHD1O14646 1710 aa23.28■■□□□ 1.32
XRCC3-206ENST00000554170 TARBP1Q13395 1621 aaKnown RBP23.26■■□□□ 1.31
XRCC3-206ENST00000554170 AQRO60306 1485 aaKnown RBP eCLIP23.21■■□□□ 1.31
XRCC3-206ENST00000554170 POLA1P09884 1462 aaPredicted RBP23.17■■□□□ 1.3
XRCC3-206ENST00000554170 CYB5RLQ6IPT4 315 aa23.14■■□□□ 1.29
XRCC3-206ENST00000554170 ARAP1Q96P48 1450 aa23.1■■□□□ 1.29
XRCC3-206ENST00000554170 RAD54L2Q9Y4B4 1467 aa23.07■■□□□ 1.28
XRCC3-206ENST00000554170 FBLN2P98095 1184 aa23.07■■□□□ 1.28
XRCC3-206ENST00000554170 SOGA1O94964 1423 aa23.03■■□□□ 1.28
XRCC3-206ENST00000554170 WDR97A6NE52 1622 aa23.03■■□□□ 1.28
XRCC3-206ENST00000554170 SUPT5HO00267 1087 aaKnown RBP23.02■■□□□ 1.28
XRCC3-206ENST00000554170 TDRD9Q8NDG6 1382 aaKnown RBP23.01■■□□□ 1.27
XRCC3-206ENST00000554170 SNAPC4Q5SXM2 1469 aa22.98■■□□□ 1.27
XRCC3-206ENST00000554170 FGD5Q6ZNL6 1462 aa22.98■■□□□ 1.27
XRCC3-206ENST00000554170 CLASP1Q7Z460 1538 aa22.96■■□□□ 1.27
XRCC3-206ENST00000554170 TRHP20396 242 aaPredicted RBP22.95■■□□□ 1.26
XRCC3-206ENST00000554170 CUX1P39880 1505 aa22.93■■□□□ 1.26
XRCC3-206ENST00000554170 MAGI1Q96QZ7 1491 aaPredicted RBP22.92■■□□□ 1.26
XRCC3-206ENST00000554170 SYNJ1O43426 1573 aa22.92■■□□□ 1.26
XRCC3-206ENST00000554170 GRIN2BQ13224 1484 aa22.87■■□□□ 1.25
XRCC3-206ENST00000554170 CHMP7Q8WUX9 453 aaPredicted RBP22.87■■□□□ 1.25
XRCC3-206ENST00000554170 SYNJ2O15056 1496 aa22.85■■□□□ 1.25
XRCC3-206ENST00000554170 PBRM1Q86U86 1689 aa22.84■■□□□ 1.25
XRCC3-206ENST00000554170 GAPVD1Q14C86 1478 aa22.77■■□□□ 1.24
XRCC3-206ENST00000554170 ABCA5Q8WWZ7 1642 aa22.74■■□□□ 1.23
XRCC3-206ENST00000554170 ABCA10Q8WWZ4 1543 aa22.72■■□□□ 1.23
XRCC3-206ENST00000554170 GRIN2AQ12879 1464 aa22.6■■□□□ 1.21
XRCC3-206ENST00000554170 ADAMTS12P58397 1594 aa22.58■■□□□ 1.2
XRCC3-206ENST00000554170 ERCC6L2Q5T890 1561 aa22.57■■□□□ 1.2
XRCC3-206ENST00000554170 WRNQ14191 1432 aaPredicted RBP eCLIP22.55■■□□□ 1.2
XRCC3-206ENST00000554170 CEP170Q5SW79 1584 aa22.55■■□□□ 1.2
XRCC3-206ENST00000554170 NUP160Q12769 1436 aa22.53■■□□□ 1.2
XRCC3-206ENST00000554170 BIVM-ERCC5R4GMW8 1640 aa22.53■■□□□ 1.2
XRCC3-206ENST00000554170 TOP2BQ02880 1626 aa22.51■■□□□ 1.19
XRCC3-206ENST00000554170 SHROOM2Q13796 1616 aa22.5■■□□□ 1.19
XRCC3-206ENST00000554170 AEBP2Q6ZN18 517 aaPredicted RBP22.48■■□□□ 1.19
XRCC3-206ENST00000554170 FHAD1B1AJZ9 1412 aa22.46■■□□□ 1.19
XRCC3-206ENST00000554170 ERICH3Q5RHP9 1530 aa22.43■■□□□ 1.18
XRCC3-206ENST00000554170 KIF13AQ9H1H9 1805 aa22.38■■□□□ 1.17
XRCC3-206ENST00000554170 PRG4Q92954 1404 aaPredicted RBP22.31■■□□□ 1.16
XRCC3-206ENST00000554170 RUSC2Q8N2Y8 1516 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms