RNA–Protein interactions for RNA: ENST00000554116.5

TUBB3-204, Transcript of tubulin beta 3 class III, humanhuman

TSL 4

Gene TUBB3, Length 542 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBB3-204ENST00000554116 NISCHQ9Y2I1 1504 aa29.54■■■□□ 2.32
TUBB3-204ENST00000554116 ABCC9O60706 1549 aa26.75■■□□□ 1.87
TUBB3-204ENST00000554116 CCDC180Q9P1Z9 1646 aa26.54■■□□□ 1.84
TUBB3-204ENST00000554116 DNAJC5BQ9UF47 199 aa25.41■■□□□ 1.66
TUBB3-204ENST00000554116 RB1CC1Q8TDY2 1594 aa25.32■■□□□ 1.64
TUBB3-204ENST00000554116 NACADO15069 1562 aa25.12■■□□□ 1.61
TUBB3-204ENST00000554116 DCAF8L2P0C7V8 631 aa24.9■■□□□ 1.58
TUBB3-204ENST00000554116 PABPN1Q86U42 306 aaKnown RBP eCLIP24.89■■□□□ 1.58
TUBB3-204ENST00000554116 UNC13AQ9UPW8 1703 aa24.89■■□□□ 1.57
TUBB3-204ENST00000554116 BICRAQ9NZM4 1560 aa24.75■■□□□ 1.55
TUBB3-204ENST00000554116 MYO15BQ96JP2 1530 aa24.74■■□□□ 1.55
TUBB3-204ENST00000554116 ZCCHC6Q5VYS8 1495 aaKnown RBP24.44■■□□□ 1.5
TUBB3-204ENST00000554116 DCAF1Q9Y4B6 1507 aa24.37■■□□□ 1.49
TUBB3-204ENST00000554116 SHROOM4Q9ULL8 1493 aa24.22■■□□□ 1.47
TUBB3-204ENST00000554116 SCRIBQ14160 1630 aa24.18■■□□□ 1.46
TUBB3-204ENST00000554116 CC2D2AQ9P2K1 1620 aa24.17■■□□□ 1.46
TUBB3-204ENST00000554116 CECR2Q9BXF3 1484 aa24.09■■□□□ 1.45
TUBB3-204ENST00000554116 EIF4G1Q04637 1599 aaKnown RBP24.06■■□□□ 1.44
TUBB3-204ENST00000554116 DNAJC5Q9H3Z4 198 aa23.54■■□□□ 1.36
TUBB3-204ENST00000554116 NCAPD3P42695 1498 aa23.24■■□□□ 1.31
TUBB3-204ENST00000554116 ATAD2BQ9ULI0 1458 aa23.16■■□□□ 1.3
TUBB3-204ENST00000554116 CUX2O14529 1486 aa23.14■■□□□ 1.29
TUBB3-204ENST00000554116 SMARCA4P51532 1647 aa23.08■■□□□ 1.28
TUBB3-204ENST00000554116 HMGXB3Q12766 1538 aa23.03■■□□□ 1.28
TUBB3-204ENST00000554116 ERCC6Q03468 1493 aa23.01■■□□□ 1.27
TUBB3-204ENST00000554116 SMARCA2P51531 1590 aa23■■□□□ 1.27
TUBB3-204ENST00000554116 NESP48681 1621 aa22.98■■□□□ 1.27
TUBB3-204ENST00000554116 BAZ1AQ9NRL2 1556 aaPredicted RBP22.88■■□□□ 1.25
TUBB3-204ENST00000554116 PEG3Q9GZU2 1588 aa22.87■■□□□ 1.25
TUBB3-204ENST00000554116 BAZ1BQ9UIG0 1483 aaKnown RBP22.85■■□□□ 1.25
TUBB3-204ENST00000554116 MROH2BQ7Z745 1585 aa22.79■■□□□ 1.24
TUBB3-204ENST00000554116 THOC2Q8NI27 1593 aaKnown RBP22.76■■□□□ 1.23
TUBB3-204ENST00000554116 LAMC3Q9Y6N6 1575 aa22.7■■□□□ 1.22
TUBB3-204ENST00000554116 KIF21AQ7Z4S6 1674 aa22.65■■□□□ 1.22
TUBB3-204ENST00000554116 PDS5BQ9NTI5 1447 aa22.54■■□□□ 1.2
TUBB3-204ENST00000554116 CADPSQ9ULU8 1353 aa22.5■■□□□ 1.19
TUBB3-204ENST00000554116 WIZO95785 1651 aa22.5■■□□□ 1.19
TUBB3-204ENST00000554116 MRC2Q9UBG0 1479 aa22.39■■□□□ 1.17
TUBB3-204ENST00000554116 WDR62O43379 1518 aa22.37■■□□□ 1.17
TUBB3-204ENST00000554116 TRIM41Q8WV44 630 aa22.3■■□□□ 1.16
TUBB3-204ENST00000554116 FANCD2Q9BXW9 1451 aa22.24■■□□□ 1.15
TUBB3-204ENST00000554116 CEP164Q9UPV0 1460 aa22.24■■□□□ 1.15
TUBB3-204ENST00000554116 RSF1Q96T23 1441 aaPredicted RBP22.23■■□□□ 1.15
TUBB3-204ENST00000554116 CFTRP13569 1480 aa22.22■■□□□ 1.15
TUBB3-204ENST00000554116 TOP2AP11388 1531 aaKnown RBP22.14■■□□□ 1.13
TUBB3-204ENST00000554116 URB2Q14146 1524 aaKnown RBP22.13■■□□□ 1.13
TUBB3-204ENST00000554116 OSCARQ8IYS5 282 aa21.98■■□□□ 1.11
TUBB3-204ENST00000554116 PRDM2Q13029 1718 aa21.97■■□□□ 1.11
TUBB3-204ENST00000554116 CCDC88BA6NC98 1476 aa21.95■■□□□ 1.1
TUBB3-204ENST00000554116 ZNF608Q9ULD9 1512 aaPredicted RBP21.89■■□□□ 1.09
TUBB3-204ENST00000554116 TOPBP1Q92547 1522 aa21.82■■□□□ 1.08
TUBB3-204ENST00000554116 IFT140Q96RY7 1462 aa21.81■■□□□ 1.08
TUBB3-204ENST00000554116 RIMBP3CA6NJZ7 1639 aa21.79■■□□□ 1.08
TUBB3-204ENST00000554116 RIMBP3BA6NNM3 1639 aa21.79■■□□□ 1.08
TUBB3-204ENST00000554116 RIMBP3Q9UFD9 1639 aa21.79■■□□□ 1.08
TUBB3-204ENST00000554116 EIF4G3O43432 1585 aaKnown RBP21.7■■□□□ 1.06
TUBB3-204ENST00000554116 DNMBPQ6XZF7 1577 aa21.7■■□□□ 1.06
TUBB3-204ENST00000554116 ARHGEF11O15085 1522 aa21.69■■□□□ 1.06
TUBB3-204ENST00000554116 TARBP1Q13395 1621 aaKnown RBP21.69■■□□□ 1.06
TUBB3-204ENST00000554116 ABCC8Q09428 1581 aa21.67■■□□□ 1.06
TUBB3-204ENST00000554116 AQRO60306 1485 aaKnown RBP eCLIP21.64■■□□□ 1.06
TUBB3-204ENST00000554116 CHD1O14646 1710 aa21.6■■□□□ 1.05
TUBB3-204ENST00000554116 POLA1P09884 1462 aaPredicted RBP21.59■■□□□ 1.05
TUBB3-204ENST00000554116 RAD54L2Q9Y4B4 1467 aa21.54■■□□□ 1.04
TUBB3-204ENST00000554116 CYB5RLQ6IPT4 315 aa21.51■■□□□ 1.03
TUBB3-204ENST00000554116 ARAP1Q96P48 1450 aa21.49■■□□□ 1.03
TUBB3-204ENST00000554116 TDRD9Q8NDG6 1382 aaKnown RBP21.47■■□□□ 1.03
TUBB3-204ENST00000554116 SOGA1O94964 1423 aa21.46■■□□□ 1.03
TUBB3-204ENST00000554116 FBLN2P98095 1184 aa21.42■■□□□ 1.02
TUBB3-204ENST00000554116 CUX1P39880 1505 aa21.41■■□□□ 1.02
TUBB3-204ENST00000554116 FGD5Q6ZNL6 1462 aa21.41■■□□□ 1.02
TUBB3-204ENST00000554116 SNAPC4Q5SXM2 1469 aa21.38■■□□□ 1.01
TUBB3-204ENST00000554116 CLASP1Q7Z460 1538 aa21.37■■□□□ 1.01
TUBB3-204ENST00000554116 TRHP20396 242 aaPredicted RBP21.35■■□□□ 1.01
TUBB3-204ENST00000554116 WDR97A6NE52 1622 aa21.34■■□□□ 1.01
TUBB3-204ENST00000554116 MAGI1Q96QZ7 1491 aaPredicted RBP21.28■■□□□ 1
TUBB3-204ENST00000554116 GRIN2BQ13224 1484 aa21.27■■□□□ 1
TUBB3-204ENST00000554116 CHMP7Q8WUX9 453 aaPredicted RBP21.24■□□□□ 0.99
TUBB3-204ENST00000554116 SYNJ1O43426 1573 aa21.23■□□□□ 0.99
TUBB3-204ENST00000554116 SYNJ2O15056 1496 aa21.23■□□□□ 0.99
TUBB3-204ENST00000554116 PBRM1Q86U86 1689 aa21.21■□□□□ 0.99
TUBB3-204ENST00000554116 GAPVD1Q14C86 1478 aa21.19■□□□□ 0.98
TUBB3-204ENST00000554116 ABCA5Q8WWZ7 1642 aa21.17■□□□□ 0.98
TUBB3-204ENST00000554116 ABCA10Q8WWZ4 1543 aa21.16■□□□□ 0.98
TUBB3-204ENST00000554116 ERCC6L2Q5T890 1561 aa21.08■□□□□ 0.97
TUBB3-204ENST00000554116 AEBP2Q6ZN18 517 aaPredicted RBP21.07■□□□□ 0.96
TUBB3-204ENST00000554116 GRIN2AQ12879 1464 aa21.02■□□□□ 0.96
TUBB3-204ENST00000554116 SUPT5HO00267 1087 aaKnown RBP21.02■□□□□ 0.96
TUBB3-204ENST00000554116 ADAMTS12P58397 1594 aa21■□□□□ 0.95
TUBB3-204ENST00000554116 CEP170Q5SW79 1584 aa21■□□□□ 0.95
TUBB3-204ENST00000554116 BIVM-ERCC5R4GMW8 1640 aa21■□□□□ 0.95
TUBB3-204ENST00000554116 NUP160Q12769 1436 aa20.99■□□□□ 0.95
TUBB3-204ENST00000554116 WRNQ14191 1432 aaPredicted RBP eCLIP20.98■□□□□ 0.95
TUBB3-204ENST00000554116 TOP2BQ02880 1626 aa20.97■□□□□ 0.95
TUBB3-204ENST00000554116 SHROOM2Q13796 1616 aa20.93■□□□□ 0.94
TUBB3-204ENST00000554116 FHAD1B1AJZ9 1412 aa20.9■□□□□ 0.94
TUBB3-204ENST00000554116 ERICH3Q5RHP9 1530 aa20.87■□□□□ 0.93
TUBB3-204ENST00000554116 KIF13AQ9H1H9 1805 aa20.78■□□□□ 0.92
TUBB3-204ENST00000554116 PRG4Q92954 1404 aaPredicted RBP20.77■□□□□ 0.91
TUBB3-204ENST00000554116 JPH4Q96JJ6 628 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 172 ms