RNA–Protein interactions for RNA: ENST00000554026.5

IFT43-206, Transcript of intraflagellar transport 43, humanhuman

TSL 2

Gene IFT43, Length 1,102 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT43-206ENST00000554026 NISCHQ9Y2I1 1504 aa26.95■■□□□ 1.91
IFT43-206ENST00000554026 CCDC180Q9P1Z9 1646 aa23.94■■□□□ 1.42
IFT43-206ENST00000554026 ABCC9O60706 1549 aa23.51■■□□□ 1.35
IFT43-206ENST00000554026 ZCCHC6Q5VYS8 1495 aaKnown RBP22.48■■□□□ 1.19
IFT43-206ENST00000554026 NACADO15069 1562 aa22.48■■□□□ 1.19
IFT43-206ENST00000554026 RB1CC1Q8TDY2 1594 aa22.45■■□□□ 1.18
IFT43-206ENST00000554026 MYO15BQ96JP2 1530 aa22.44■■□□□ 1.18
IFT43-206ENST00000554026 DCAF8L2P0C7V8 631 aa22.42■■□□□ 1.18
IFT43-206ENST00000554026 DCAF1Q9Y4B6 1507 aa22.38■■□□□ 1.17
IFT43-206ENST00000554026 DNAJC5BQ9UF47 199 aa22.04■■□□□ 1.12
IFT43-206ENST00000554026 UNC13AQ9UPW8 1703 aa21.97■■□□□ 1.11
IFT43-206ENST00000554026 SCRIBQ14160 1630 aa21.76■■□□□ 1.07
IFT43-206ENST00000554026 PABPN1Q86U42 306 aaKnown RBP eCLIP21.75■■□□□ 1.07
IFT43-206ENST00000554026 BICRAQ9NZM4 1560 aa21.7■■□□□ 1.06
IFT43-206ENST00000554026 SHROOM4Q9ULL8 1493 aa21.63■■□□□ 1.05
IFT43-206ENST00000554026 CC2D2AQ9P2K1 1620 aa21.29■■□□□ 1
IFT43-206ENST00000554026 EIF4G1Q04637 1599 aaKnown RBP21.2■□□□□ 0.98
IFT43-206ENST00000554026 CECR2Q9BXF3 1484 aa21.2■□□□□ 0.98
IFT43-206ENST00000554026 BAZ1AQ9NRL2 1556 aaPredicted RBP20.92■□□□□ 0.94
IFT43-206ENST00000554026 SMARCA4P51532 1647 aa20.87■□□□□ 0.93
IFT43-206ENST00000554026 SMARCA2P51531 1590 aa20.76■□□□□ 0.91
IFT43-206ENST00000554026 MROH2BQ7Z745 1585 aa20.72■□□□□ 0.91
IFT43-206ENST00000554026 NCAPD3P42695 1498 aa20.72■□□□□ 0.91
IFT43-206ENST00000554026 ATAD2BQ9ULI0 1458 aa20.71■□□□□ 0.91
IFT43-206ENST00000554026 PEG3Q9GZU2 1588 aa20.7■□□□□ 0.9
IFT43-206ENST00000554026 HMGXB3Q12766 1538 aa20.63■□□□□ 0.89
IFT43-206ENST00000554026 BAZ1BQ9UIG0 1483 aaKnown RBP20.58■□□□□ 0.89
IFT43-206ENST00000554026 RSF1Q96T23 1441 aaPredicted RBP20.58■□□□□ 0.88
IFT43-206ENST00000554026 WIZO95785 1651 aa20.5■□□□□ 0.87
IFT43-206ENST00000554026 DNAJC5Q9H3Z4 198 aa20.36■□□□□ 0.85
IFT43-206ENST00000554026 TOP2AP11388 1531 aaKnown RBP20.36■□□□□ 0.85
IFT43-206ENST00000554026 CUX2O14529 1486 aa20.36■□□□□ 0.85
IFT43-206ENST00000554026 ERCC6Q03468 1493 aa20.33■□□□□ 0.85
IFT43-206ENST00000554026 LAMC3Q9Y6N6 1575 aa20.17■□□□□ 0.82
IFT43-206ENST00000554026 SUPT5HO00267 1087 aaKnown RBP20.16■□□□□ 0.82
IFT43-206ENST00000554026 NESP48681 1621 aa20.14■□□□□ 0.81
IFT43-206ENST00000554026 CADPSQ9ULU8 1353 aa20.11■□□□□ 0.81
IFT43-206ENST00000554026 THOC2Q8NI27 1593 aaKnown RBP20.09■□□□□ 0.81
IFT43-206ENST00000554026 CCDC88BA6NC98 1476 aa20.09■□□□□ 0.81
IFT43-206ENST00000554026 PDS5BQ9NTI5 1447 aa20.04■□□□□ 0.8
IFT43-206ENST00000554026 CFTRP13569 1480 aa20.02■□□□□ 0.8
IFT43-206ENST00000554026 KIF21AQ7Z4S6 1674 aa20.01■□□□□ 0.79
IFT43-206ENST00000554026 PRDM2Q13029 1718 aa19.9■□□□□ 0.78
IFT43-206ENST00000554026 FANCD2Q9BXW9 1451 aa19.86■□□□□ 0.77
IFT43-206ENST00000554026 CEP164Q9UPV0 1460 aa19.85■□□□□ 0.77
IFT43-206ENST00000554026 MRC2Q9UBG0 1479 aa19.78■□□□□ 0.76
IFT43-206ENST00000554026 WDR62O43379 1518 aa19.74■□□□□ 0.75
IFT43-206ENST00000554026 ABCC8Q09428 1581 aa19.68■□□□□ 0.74
IFT43-206ENST00000554026 URB2Q14146 1524 aaKnown RBP19.61■□□□□ 0.73
IFT43-206ENST00000554026 DNMBPQ6XZF7 1577 aa19.57■□□□□ 0.72
IFT43-206ENST00000554026 TOPBP1Q92547 1522 aa19.56■□□□□ 0.72
IFT43-206ENST00000554026 TRIM41Q8WV44 630 aa19.45■□□□□ 0.7
IFT43-206ENST00000554026 IFT140Q96RY7 1462 aa19.44■□□□□ 0.7
IFT43-206ENST00000554026 CUX1P39880 1505 aa19.44■□□□□ 0.7
IFT43-206ENST00000554026 WRNQ14191 1432 aaPredicted RBP eCLIP19.43■□□□□ 0.7
IFT43-206ENST00000554026 POLA1P09884 1462 aaPredicted RBP19.39■□□□□ 0.69
IFT43-206ENST00000554026 FGD5Q6ZNL6 1462 aa19.37■□□□□ 0.69
IFT43-206ENST00000554026 TOP2BQ02880 1626 aa19.36■□□□□ 0.69
IFT43-206ENST00000554026 BIVM-ERCC5R4GMW8 1640 aa19.36■□□□□ 0.69
IFT43-206ENST00000554026 SOGA1O94964 1423 aa19.35■□□□□ 0.69
IFT43-206ENST00000554026 TARBP1Q13395 1621 aaKnown RBP19.32■□□□□ 0.68
IFT43-206ENST00000554026 SYNJ1O43426 1573 aa19.31■□□□□ 0.68
IFT43-206ENST00000554026 WDR97A6NE52 1622 aa19.29■□□□□ 0.68
IFT43-206ENST00000554026 RAD54L2Q9Y4B4 1467 aa19.26■□□□□ 0.67
IFT43-206ENST00000554026 OSCARQ8IYS5 282 aa19.24■□□□□ 0.67
IFT43-206ENST00000554026 ABCA10Q8WWZ4 1543 aa19.23■□□□□ 0.67
IFT43-206ENST00000554026 ZNF608Q9ULD9 1512 aaPredicted RBP19.23■□□□□ 0.67
IFT43-206ENST00000554026 RIMBP3CA6NJZ7 1639 aa19.21■□□□□ 0.67
IFT43-206ENST00000554026 RIMBP3BA6NNM3 1639 aa19.21■□□□□ 0.67
IFT43-206ENST00000554026 RIMBP3Q9UFD9 1639 aa19.21■□□□□ 0.67
IFT43-206ENST00000554026 EIF4G3O43432 1585 aaKnown RBP19.2■□□□□ 0.66
IFT43-206ENST00000554026 AQRO60306 1485 aaKnown RBP eCLIP19.17■□□□□ 0.66
IFT43-206ENST00000554026 TDRD9Q8NDG6 1382 aaKnown RBP19.17■□□□□ 0.66
IFT43-206ENST00000554026 GAPVD1Q14C86 1478 aa19.13■□□□□ 0.65
IFT43-206ENST00000554026 GRIN2BQ13224 1484 aa19.12■□□□□ 0.65
IFT43-206ENST00000554026 CHD1O14646 1710 aa19.11■□□□□ 0.65
IFT43-206ENST00000554026 ABCA5Q8WWZ7 1642 aa19.11■□□□□ 0.65
IFT43-206ENST00000554026 ARHGEF11O15085 1522 aa19.1■□□□□ 0.65
IFT43-206ENST00000554026 MAGI1Q96QZ7 1491 aaPredicted RBP19.07■□□□□ 0.64
IFT43-206ENST00000554026 KIF27Q86VH2 1401 aa19.05■□□□□ 0.64
IFT43-206ENST00000554026 PBRM1Q86U86 1689 aa19.05■□□□□ 0.64
IFT43-206ENST00000554026 ERICH3Q5RHP9 1530 aa19.02■□□□□ 0.64
IFT43-206ENST00000554026 SNAPC4Q5SXM2 1469 aa19.02■□□□□ 0.63
IFT43-206ENST00000554026 SYNJ2O15056 1496 aa18.97■□□□□ 0.63
IFT43-206ENST00000554026 CHMP7Q8WUX9 453 aaPredicted RBP18.96■□□□□ 0.63
IFT43-206ENST00000554026 FBLN2P98095 1184 aa18.94■□□□□ 0.62
IFT43-206ENST00000554026 FHAD1B1AJZ9 1412 aa18.93■□□□□ 0.62
IFT43-206ENST00000554026 CHIC1Q5VXU3 224 aa18.92■□□□□ 0.62
IFT43-206ENST00000554026 ADAMTS12P58397 1594 aa18.91■□□□□ 0.62
IFT43-206ENST00000554026 IGF1RP08069 1367 aa18.9■□□□□ 0.62
IFT43-206ENST00000554026 ARAP1Q96P48 1450 aa18.89■□□□□ 0.61
IFT43-206ENST00000554026 CUL7Q14999 1698 aa18.89■□□□□ 0.61
IFT43-206ENST00000554026 GRIN2AQ12879 1464 aa18.85■□□□□ 0.61
IFT43-206ENST00000554026 EEA1Q15075 1411 aa18.84■□□□□ 0.61
IFT43-206ENST00000554026 CLASP1Q7Z460 1538 aa18.83■□□□□ 0.6
IFT43-206ENST00000554026 CYB5RLQ6IPT4 315 aa18.81■□□□□ 0.6
IFT43-206ENST00000554026 CARMIL1Q5VZK9 1371 aa18.81■□□□□ 0.6
IFT43-206ENST00000554026 RUSC2Q8N2Y8 1516 aa18.79■□□□□ 0.6
IFT43-206ENST00000554026 NUP160Q12769 1436 aa18.75■□□□□ 0.59
IFT43-206ENST00000554026 RAPGEF2Q9Y4G8 1499 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 183.3 ms