RNA–Protein interactions for RNA: ENST00000553904.1

FOXN3-205, Transcript of forkhead box N3, humanhuman

TSL 3

Gene FOXN3, Length 337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-205ENST00000553904 NISCHQ9Y2I1 1504 aa15.86■□□□□ 0.13
FOXN3-205ENST00000553904 CCDC180Q9P1Z9 1646 aa14.12□□□□□ -0.15
FOXN3-205ENST00000553904 ABCC9O60706 1549 aa14.1□□□□□ -0.15
FOXN3-205ENST00000553904 DCAF8L2P0C7V8 631 aa13.53□□□□□ -0.24
FOXN3-205ENST00000553904 RB1CC1Q8TDY2 1594 aa13.48□□□□□ -0.25
FOXN3-205ENST00000553904 NACADO15069 1562 aa13.42□□□□□ -0.26
FOXN3-205ENST00000553904 MYO15BQ96JP2 1530 aa13.29□□□□□ -0.28
FOXN3-205ENST00000553904 PABPN1Q86U42 306 aaKnown RBP eCLIP13.21□□□□□ -0.29
FOXN3-205ENST00000553904 DNAJC5BQ9UF47 199 aa13.15□□□□□ -0.3
FOXN3-205ENST00000553904 ZCCHC6Q5VYS8 1495 aaKnown RBP13.12□□□□□ -0.31
FOXN3-205ENST00000553904 DCAF1Q9Y4B6 1507 aa13.12□□□□□ -0.31
FOXN3-205ENST00000553904 BICRAQ9NZM4 1560 aa12.98□□□□□ -0.33
FOXN3-205ENST00000553904 UNC13AQ9UPW8 1703 aa12.96□□□□□ -0.33
FOXN3-205ENST00000553904 SHROOM4Q9ULL8 1493 aa12.93□□□□□ -0.34
FOXN3-205ENST00000553904 SCRIBQ14160 1630 aa12.86□□□□□ -0.35
FOXN3-205ENST00000553904 CECR2Q9BXF3 1484 aa12.72□□□□□ -0.37
FOXN3-205ENST00000553904 EIF4G1Q04637 1599 aaKnown RBP12.7□□□□□ -0.38
FOXN3-205ENST00000553904 CC2D2AQ9P2K1 1620 aa12.7□□□□□ -0.38
FOXN3-205ENST00000553904 NCAPD3P42695 1498 aa12.41□□□□□ -0.42
FOXN3-205ENST00000553904 ATAD2BQ9ULI0 1458 aa12.35□□□□□ -0.43
FOXN3-205ENST00000553904 SMARCA2P51531 1590 aa12.35□□□□□ -0.43
FOXN3-205ENST00000553904 BAZ1AQ9NRL2 1556 aaPredicted RBP12.32□□□□□ -0.44
FOXN3-205ENST00000553904 SMARCA4P51532 1647 aa12.29□□□□□ -0.44
FOXN3-205ENST00000553904 HMGXB3Q12766 1538 aa12.27□□□□□ -0.45
FOXN3-205ENST00000553904 BAZ1BQ9UIG0 1483 aaKnown RBP12.25□□□□□ -0.45
FOXN3-205ENST00000553904 ERCC6Q03468 1493 aa12.22□□□□□ -0.45
FOXN3-205ENST00000553904 PEG3Q9GZU2 1588 aa12.2□□□□□ -0.46
FOXN3-205ENST00000553904 MROH2BQ7Z745 1585 aa12.18□□□□□ -0.46
FOXN3-205ENST00000553904 CUX2O14529 1486 aa12.15□□□□□ -0.46
FOXN3-205ENST00000553904 DNAJC5Q9H3Z4 198 aa12.1□□□□□ -0.47
FOXN3-205ENST00000553904 PDS5BQ9NTI5 1447 aa12.1□□□□□ -0.47
FOXN3-205ENST00000553904 NESP48681 1621 aa12.09□□□□□ -0.47
FOXN3-205ENST00000553904 LAMC3Q9Y6N6 1575 aa12.08□□□□□ -0.48
FOXN3-205ENST00000553904 CADPSQ9ULU8 1353 aa12.07□□□□□ -0.48
FOXN3-205ENST00000553904 RSF1Q96T23 1441 aaPredicted RBP12.03□□□□□ -0.48
FOXN3-205ENST00000553904 WIZO95785 1651 aa12□□□□□ -0.49
FOXN3-205ENST00000553904 TOP2AP11388 1531 aaKnown RBP11.91□□□□□ -0.5
FOXN3-205ENST00000553904 CFTRP13569 1480 aa11.9□□□□□ -0.5
FOXN3-205ENST00000553904 MRC2Q9UBG0 1479 aa11.9□□□□□ -0.5
FOXN3-205ENST00000553904 THOC2Q8NI27 1593 aaKnown RBP11.89□□□□□ -0.51
FOXN3-205ENST00000553904 CEP164Q9UPV0 1460 aa11.89□□□□□ -0.51
FOXN3-205ENST00000553904 FANCD2Q9BXW9 1451 aa11.88□□□□□ -0.51
FOXN3-205ENST00000553904 KIF21AQ7Z4S6 1674 aa11.86□□□□□ -0.51
FOXN3-205ENST00000553904 WDR62O43379 1518 aa11.82□□□□□ -0.52
FOXN3-205ENST00000553904 CCDC88BA6NC98 1476 aa11.82□□□□□ -0.52
FOXN3-205ENST00000553904 OSCARQ8IYS5 282 aa11.74□□□□□ -0.53
FOXN3-205ENST00000553904 ABCC8Q09428 1581 aa11.73□□□□□ -0.53
FOXN3-205ENST00000553904 URB2Q14146 1524 aaKnown RBP11.71□□□□□ -0.53
FOXN3-205ENST00000553904 SUPT5HO00267 1087 aaKnown RBP11.67□□□□□ -0.54
FOXN3-205ENST00000553904 IFT140Q96RY7 1462 aa11.67□□□□□ -0.54
FOXN3-205ENST00000553904 TOPBP1Q92547 1522 aa11.64□□□□□ -0.55
FOXN3-205ENST00000553904 PRDM2Q13029 1718 aa11.63□□□□□ -0.55
FOXN3-205ENST00000553904 TRIM41Q8WV44 630 aa11.61□□□□□ -0.55
FOXN3-205ENST00000553904 DNMBPQ6XZF7 1577 aa11.59□□□□□ -0.55
FOXN3-205ENST00000553904 SOGA1O94964 1423 aa11.57□□□□□ -0.56
FOXN3-205ENST00000553904 ZNF608Q9ULD9 1512 aaPredicted RBP11.55□□□□□ -0.56
FOXN3-205ENST00000553904 FBLN2P98095 1184 aa11.55□□□□□ -0.56
FOXN3-205ENST00000553904 AQRO60306 1485 aaKnown RBP eCLIP11.52□□□□□ -0.56
FOXN3-205ENST00000553904 POLA1P09884 1462 aaPredicted RBP11.52□□□□□ -0.56
FOXN3-205ENST00000553904 CHMP7Q8WUX9 453 aaPredicted RBP11.5□□□□□ -0.57
FOXN3-205ENST00000553904 TDRD9Q8NDG6 1382 aaKnown RBP11.5□□□□□ -0.57
FOXN3-205ENST00000553904 RAD54L2Q9Y4B4 1467 aa11.48□□□□□ -0.57
FOXN3-205ENST00000553904 TARBP1Q13395 1621 aaKnown RBP11.47□□□□□ -0.57
FOXN3-205ENST00000553904 FGD5Q6ZNL6 1462 aa11.46□□□□□ -0.57
FOXN3-205ENST00000553904 EIF4G3O43432 1585 aaKnown RBP11.45□□□□□ -0.58
FOXN3-205ENST00000553904 CUX1P39880 1505 aa11.44□□□□□ -0.58
FOXN3-205ENST00000553904 WDR97A6NE52 1622 aa11.43□□□□□ -0.58
FOXN3-205ENST00000553904 CYB5RLQ6IPT4 315 aa11.43□□□□□ -0.58
FOXN3-205ENST00000553904 GRIN2BQ13224 1484 aa11.42□□□□□ -0.58
FOXN3-205ENST00000553904 WRNQ14191 1432 aaPredicted RBP eCLIP11.41□□□□□ -0.58
FOXN3-205ENST00000553904 MAGI1Q96QZ7 1491 aaPredicted RBP11.4□□□□□ -0.58
FOXN3-205ENST00000553904 GAPVD1Q14C86 1478 aa11.39□□□□□ -0.59
FOXN3-205ENST00000553904 SNAPC4Q5SXM2 1469 aa11.38□□□□□ -0.59
FOXN3-205ENST00000553904 ARHGEF11O15085 1522 aa11.37□□□□□ -0.59
FOXN3-205ENST00000553904 ABCA10Q8WWZ4 1543 aa11.36□□□□□ -0.59
FOXN3-205ENST00000553904 SYNJ2O15056 1496 aa11.36□□□□□ -0.59
FOXN3-205ENST00000553904 RIMBP3CA6NJZ7 1639 aa11.35□□□□□ -0.59
FOXN3-205ENST00000553904 RIMBP3BA6NNM3 1639 aa11.35□□□□□ -0.59
FOXN3-205ENST00000553904 RIMBP3Q9UFD9 1639 aa11.35□□□□□ -0.59
FOXN3-205ENST00000553904 SYNJ1O43426 1573 aa11.32□□□□□ -0.6
FOXN3-205ENST00000553904 CHD1O14646 1710 aa11.31□□□□□ -0.6
FOXN3-205ENST00000553904 TRHP20396 242 aaPredicted RBP11.3□□□□□ -0.6
FOXN3-205ENST00000553904 TOP2BQ02880 1626 aa11.29□□□□□ -0.6
FOXN3-205ENST00000553904 FHAD1B1AJZ9 1412 aa11.26□□□□□ -0.61
FOXN3-205ENST00000553904 ABCA5Q8WWZ7 1642 aa11.25□□□□□ -0.61
FOXN3-205ENST00000553904 BIVM-ERCC5R4GMW8 1640 aa11.25□□□□□ -0.61
FOXN3-205ENST00000553904 ARAP1Q96P48 1450 aa11.25□□□□□ -0.61
FOXN3-205ENST00000553904 CLASP1Q7Z460 1538 aa11.25□□□□□ -0.61
FOXN3-205ENST00000553904 GRIN2AQ12879 1464 aa11.23□□□□□ -0.61
FOXN3-205ENST00000553904 ERICH3Q5RHP9 1530 aa11.23□□□□□ -0.61
FOXN3-205ENST00000553904 PBRM1Q86U86 1689 aa11.23□□□□□ -0.61
FOXN3-205ENST00000553904 JPH4Q96JJ6 628 aa11.21□□□□□ -0.61
FOXN3-205ENST00000553904 NUP160Q12769 1436 aa11.19□□□□□ -0.62
FOXN3-205ENST00000553904 KIF27Q86VH2 1401 aa11.19□□□□□ -0.62
FOXN3-205ENST00000553904 IGF1RP08069 1367 aa11.16□□□□□ -0.62
FOXN3-205ENST00000553904 ADAMTS12P58397 1594 aa11.16□□□□□ -0.62
FOXN3-205ENST00000553904 NPM1P06748 294 aaKnown RBP eCLIP11.15□□□□□ -0.62
FOXN3-205ENST00000553904 CEP170Q5SW79 1584 aa11.12□□□□□ -0.63
FOXN3-205ENST00000553904 PRG4Q92954 1404 aaPredicted RBP11.12□□□□□ -0.63
FOXN3-205ENST00000553904 CARMIL1Q5VZK9 1371 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms