RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 NISCHQ9Y2I1 1504 aa28.38■■■□□ 2.13
VIPAS39-206ENST00000553888 CCDC180Q9P1Z9 1646 aa24.54■■□□□ 1.52
VIPAS39-206ENST00000553888 ZCCHC6Q5VYS8 1495 aaKnown RBP23.87■■□□□ 1.41
VIPAS39-206ENST00000553888 DCAF8L2P0C7V8 631 aa23.65■■□□□ 1.38
VIPAS39-206ENST00000553888 SHROOM4Q9ULL8 1493 aa23.62■■□□□ 1.37
VIPAS39-206ENST00000553888 ABCC9O60706 1549 aa23.3■■□□□ 1.32
VIPAS39-206ENST00000553888 DCAF1Q9Y4B6 1507 aa23.28■■□□□ 1.32
VIPAS39-206ENST00000553888 MYO15BQ96JP2 1530 aa22.88■■□□□ 1.25
VIPAS39-206ENST00000553888 SCRIBQ14160 1630 aa22.85■■□□□ 1.25
VIPAS39-206ENST00000553888 NACADO15069 1562 aa22.8■■□□□ 1.24
VIPAS39-206ENST00000553888 SUPT5HO00267 1087 aaKnown RBP22.78■■□□□ 1.24
VIPAS39-206ENST00000553888 RB1CC1Q8TDY2 1594 aa22.61■■□□□ 1.21
VIPAS39-206ENST00000553888 UNC13AQ9UPW8 1703 aa22.37■■□□□ 1.17
VIPAS39-206ENST00000553888 CECR2Q9BXF3 1484 aa22.19■■□□□ 1.14
VIPAS39-206ENST00000553888 RSF1Q96T23 1441 aaPredicted RBP22.15■■□□□ 1.14
VIPAS39-206ENST00000553888 PABPN1Q86U42 306 aaKnown RBP eCLIP22.09■■□□□ 1.13
VIPAS39-206ENST00000553888 BICRAQ9NZM4 1560 aa22.04■■□□□ 1.12
VIPAS39-206ENST00000553888 MROH2BQ7Z745 1585 aa22.04■■□□□ 1.12
VIPAS39-206ENST00000553888 WIZO95785 1651 aa21.92■■□□□ 1.1
VIPAS39-206ENST00000553888 BAZ1AQ9NRL2 1556 aaPredicted RBP21.85■■□□□ 1.09
VIPAS39-206ENST00000553888 SMARCA4P51532 1647 aa21.8■■□□□ 1.08
VIPAS39-206ENST00000553888 CHIC1Q5VXU3 224 aa21.79■■□□□ 1.08
VIPAS39-206ENST00000553888 TOP2AP11388 1531 aaKnown RBP21.53■■□□□ 1.04
VIPAS39-206ENST00000553888 SMARCA2P51531 1590 aa21.41■■□□□ 1.02
VIPAS39-206ENST00000553888 CCDC88BA6NC98 1476 aa21.4■■□□□ 1.02
VIPAS39-206ENST00000553888 PEG3Q9GZU2 1588 aa21.4■■□□□ 1.02
VIPAS39-206ENST00000553888 ATAD2BQ9ULI0 1458 aa21.38■■□□□ 1.01
VIPAS39-206ENST00000553888 EIF4G1Q04637 1599 aaKnown RBP21.33■■□□□ 1.01
VIPAS39-206ENST00000553888 BAZ1BQ9UIG0 1483 aaKnown RBP21.28■■□□□ 1
VIPAS39-206ENST00000553888 TRIM41Q8WV44 630 aa21.26■□□□□ 0.99
VIPAS39-206ENST00000553888 ABCC8Q09428 1581 aa21.14■□□□□ 0.97
VIPAS39-206ENST00000553888 LOC105371045A0A1W2PR82 267 aa21.13■□□□□ 0.97
VIPAS39-206ENST00000553888 FAM9AQ8IZU1 332 aaPredicted RBP21.08■□□□□ 0.97
VIPAS39-206ENST00000553888 NCAPD3P42695 1498 aa21.07■□□□□ 0.96
VIPAS39-206ENST00000553888 HMGXB3Q12766 1538 aa21.05■□□□□ 0.96
VIPAS39-206ENST00000553888 CC2D2AQ9P2K1 1620 aa21.02■□□□□ 0.95
VIPAS39-206ENST00000553888 EHMT2Q96KQ7 1210 aa20.94■□□□□ 0.94
VIPAS39-206ENST00000553888 WRNQ14191 1432 aaPredicted RBP eCLIP20.82■□□□□ 0.92
VIPAS39-206ENST00000553888 SYNJ1O43426 1573 aa20.81■□□□□ 0.92
VIPAS39-206ENST00000553888 SOGA1O94964 1423 aa20.75■□□□□ 0.91
VIPAS39-206ENST00000553888 RUSC2Q8N2Y8 1516 aa20.72■□□□□ 0.91
VIPAS39-206ENST00000553888 CFTRP13569 1480 aa20.7■□□□□ 0.91
VIPAS39-206ENST00000553888 DNAJC5BQ9UF47 199 aa20.67■□□□□ 0.9
VIPAS39-206ENST00000553888 PRDM2Q13029 1718 aa20.63■□□□□ 0.89
VIPAS39-206ENST00000553888 CADPSQ9ULU8 1353 aa20.6■□□□□ 0.89
VIPAS39-206ENST00000553888 TOP2BQ02880 1626 aa20.6■□□□□ 0.89
VIPAS39-206ENST00000553888 CUX1P39880 1505 aa20.57■□□□□ 0.88
VIPAS39-206ENST00000553888 BIVM-ERCC5R4GMW8 1640 aa20.57■□□□□ 0.88
VIPAS39-206ENST00000553888 NESP48681 1621 aa20.55■□□□□ 0.88
VIPAS39-206ENST00000553888 CSRNP3Q8WYN3 585 aa20.51■□□□□ 0.87
VIPAS39-206ENST00000553888 EEA1Q15075 1411 aa20.46■□□□□ 0.87
VIPAS39-206ENST00000553888 FANCD2Q9BXW9 1451 aa20.43■□□□□ 0.86
VIPAS39-206ENST00000553888 UBTFP17480 764 aaKnown RBP20.36■□□□□ 0.85
VIPAS39-206ENST00000553888 PCGF6Q9BYE7 350 aa20.34■□□□□ 0.85
VIPAS39-206ENST00000553888 LAMC3Q9Y6N6 1575 aa20.33■□□□□ 0.84
VIPAS39-206ENST00000553888 GOLGA3Q08378 1498 aa20.32■□□□□ 0.84
VIPAS39-206ENST00000553888 FGD5Q6ZNL6 1462 aa20.31■□□□□ 0.84
VIPAS39-206ENST00000553888 KIF21BO75037 1637 aa20.3■□□□□ 0.84
VIPAS39-206ENST00000553888 RAPGEF2Q9Y4G8 1499 aa20.29■□□□□ 0.84
VIPAS39-206ENST00000553888 CEP162Q5TB80 1403 aa20.28■□□□□ 0.84
VIPAS39-206ENST00000553888 CEP164Q9UPV0 1460 aa20.28■□□□□ 0.84
VIPAS39-206ENST00000553888 TNIKQ9UKE5 1360 aa20.28■□□□□ 0.84
VIPAS39-206ENST00000553888 KIF21AQ7Z4S6 1674 aa20.26■□□□□ 0.83
VIPAS39-206ENST00000553888 PPARGC1BQ86YN6 1023 aaKnown RBP20.24■□□□□ 0.83
VIPAS39-206ENST00000553888 DNMBPQ6XZF7 1577 aa20.23■□□□□ 0.83
VIPAS39-206ENST00000553888 TOPBP1Q92547 1522 aa20.23■□□□□ 0.83
VIPAS39-206ENST00000553888 KIF27Q86VH2 1401 aa20.22■□□□□ 0.83
VIPAS39-206ENST00000553888 CUX2O14529 1486 aa20.22■□□□□ 0.83
VIPAS39-206ENST00000553888 URB2Q14146 1524 aaKnown RBP20.2■□□□□ 0.82
VIPAS39-206ENST00000553888 RAD54L2Q9Y4B4 1467 aa20.2■□□□□ 0.82
VIPAS39-206ENST00000553888 RANGAP1P46060 587 aaPredicted RBP20.19■□□□□ 0.82
VIPAS39-206ENST00000553888 PDS5BQ9NTI5 1447 aa20.17■□□□□ 0.82
VIPAS39-206ENST00000553888 POLA1P09884 1462 aaPredicted RBP20.17■□□□□ 0.82
VIPAS39-206ENST00000553888 PRXQ9BXM0 1461 aa20.15■□□□□ 0.82
VIPAS39-206ENST00000553888 TRIM26Q12899 539 aaPredicted RBP20.1■□□□□ 0.81
VIPAS39-206ENST00000553888 IGF1RP08069 1367 aa20.08■□□□□ 0.81
VIPAS39-206ENST00000553888 ERICH3Q5RHP9 1530 aa20.08■□□□□ 0.81
VIPAS39-206ENST00000553888 CLIP1P30622 1438 aa20.06■□□□□ 0.8
VIPAS39-206ENST00000553888 TTBK1Q5TCY1 1321 aaPredicted RBP20.06■□□□□ 0.8
VIPAS39-206ENST00000553888 ABCA10Q8WWZ4 1543 aa20.04■□□□□ 0.8
VIPAS39-206ENST00000553888 WDR97A6NE52 1622 aa20.01■□□□□ 0.79
VIPAS39-206ENST00000553888 CARMIL1Q5VZK9 1371 aa19.98■□□□□ 0.79
VIPAS39-206ENST00000553888 TDRD9Q8NDG6 1382 aaKnown RBP19.97■□□□□ 0.79
VIPAS39-206ENST00000553888 MRC2Q9UBG0 1479 aa19.94■□□□□ 0.78
VIPAS39-206ENST00000553888 TARBP1Q13395 1621 aaKnown RBP19.91■□□□□ 0.78
VIPAS39-206ENST00000553888 ABCA5Q8WWZ7 1642 aa19.9■□□□□ 0.78
VIPAS39-206ENST00000553888 ERCC6Q03468 1493 aa19.87■□□□□ 0.77
VIPAS39-206ENST00000553888 VPS8Q8N3P4 1428 aa19.87■□□□□ 0.77
VIPAS39-206ENST00000553888 ARAP1Q96P48 1450 aa19.87■□□□□ 0.77
VIPAS39-206ENST00000553888 GAPVD1Q14C86 1478 aa19.86■□□□□ 0.77
VIPAS39-206ENST00000553888 CUL7Q14999 1698 aa19.83■□□□□ 0.76
VIPAS39-206ENST00000553888 WDR62O43379 1518 aa19.82■□□□□ 0.76
VIPAS39-206ENST00000553888 ARHGAP35Q9NRY4 1499 aa19.82■□□□□ 0.76
VIPAS39-206ENST00000553888 AQRO60306 1485 aaKnown RBP eCLIP19.81■□□□□ 0.762e-6■■■■■ 28.9
VIPAS39-206ENST00000553888 HRCP23327 699 aa19.8■□□□□ 0.76
VIPAS39-206ENST00000553888 PBRM1Q86U86 1689 aa19.78■□□□□ 0.76
VIPAS39-206ENST00000553888 THOC2Q8NI27 1593 aaKnown RBP19.77■□□□□ 0.76
VIPAS39-206ENST00000553888 ZNF608Q9ULD9 1512 aaPredicted RBP19.77■□□□□ 0.76
VIPAS39-206ENST00000553888 CTTNBP2Q8WZ74 1663 aa19.73■□□□□ 0.75
VIPAS39-206ENST00000553888 P3H3Q8IVL6 736 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms