RNA–Protein interactions for RNA: ENST00000553846.1

PRKCH-208, Transcript of protein kinase C eta, humanhuman

TSL 4

Gene PRKCH, Length 557 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-208ENST00000553846 NISCHQ9Y2I1 1504 aa23.79■■□□□ 1.4
PRKCH-208ENST00000553846 ABCC9O60706 1549 aa21.82■■□□□ 1.08
PRKCH-208ENST00000553846 CCDC180Q9P1Z9 1646 aa21.56■■□□□ 1.04
PRKCH-208ENST00000553846 DNAJC5BQ9UF47 199 aa20.88■□□□□ 0.93
PRKCH-208ENST00000553846 RB1CC1Q8TDY2 1594 aa20.63■□□□□ 0.89
PRKCH-208ENST00000553846 NACADO15069 1562 aa20.42■□□□□ 0.86
PRKCH-208ENST00000553846 UNC13AQ9UPW8 1703 aa20.27■□□□□ 0.83
PRKCH-208ENST00000553846 PABPN1Q86U42 306 aaKnown RBP eCLIP20.18■□□□□ 0.82
PRKCH-208ENST00000553846 BICRAQ9NZM4 1560 aa20.17■□□□□ 0.82
PRKCH-208ENST00000553846 MYO15BQ96JP2 1530 aa20.1■□□□□ 0.81
PRKCH-208ENST00000553846 DCAF8L2P0C7V8 631 aa19.91■□□□□ 0.78
PRKCH-208ENST00000553846 SHROOM4Q9ULL8 1493 aa19.83■□□□□ 0.76
PRKCH-208ENST00000553846 CC2D2AQ9P2K1 1620 aa19.76■□□□□ 0.75
PRKCH-208ENST00000553846 CECR2Q9BXF3 1484 aa19.72■□□□□ 0.75
PRKCH-208ENST00000553846 DCAF1Q9Y4B6 1507 aa19.69■□□□□ 0.74
PRKCH-208ENST00000553846 ZCCHC6Q5VYS8 1495 aaKnown RBP19.67■□□□□ 0.74
PRKCH-208ENST00000553846 EIF4G1Q04637 1599 aaKnown RBP19.63■□□□□ 0.73
PRKCH-208ENST00000553846 SCRIBQ14160 1630 aa19.53■□□□□ 0.72
PRKCH-208ENST00000553846 DNAJC5Q9H3Z4 198 aa19.41■□□□□ 0.7
PRKCH-208ENST00000553846 CUX2O14529 1486 aa19.03■□□□□ 0.64
PRKCH-208ENST00000553846 NCAPD3P42695 1498 aa18.88■□□□□ 0.61
PRKCH-208ENST00000553846 ERCC6Q03468 1493 aa18.8■□□□□ 0.6
PRKCH-208ENST00000553846 ATAD2BQ9ULI0 1458 aa18.76■□□□□ 0.59
PRKCH-208ENST00000553846 HMGXB3Q12766 1538 aa18.73■□□□□ 0.59
PRKCH-208ENST00000553846 NESP48681 1621 aa18.68■□□□□ 0.58
PRKCH-208ENST00000553846 THOC2Q8NI27 1593 aaKnown RBP18.66■□□□□ 0.58
PRKCH-208ENST00000553846 SMARCA2P51531 1590 aa18.65■□□□□ 0.58
PRKCH-208ENST00000553846 SMARCA4P51532 1647 aa18.65■□□□□ 0.58
PRKCH-208ENST00000553846 PEG3Q9GZU2 1588 aa18.55■□□□□ 0.56
PRKCH-208ENST00000553846 LAMC3Q9Y6N6 1575 aa18.5■□□□□ 0.55
PRKCH-208ENST00000553846 BAZ1BQ9UIG0 1483 aaKnown RBP18.49■□□□□ 0.55
PRKCH-208ENST00000553846 BAZ1AQ9NRL2 1556 aaPredicted RBP18.46■□□□□ 0.55
PRKCH-208ENST00000553846 KIF21AQ7Z4S6 1674 aa18.45■□□□□ 0.54
PRKCH-208ENST00000553846 MROH2BQ7Z745 1585 aa18.33■□□□□ 0.52
PRKCH-208ENST00000553846 PDS5BQ9NTI5 1447 aa18.32■□□□□ 0.52
PRKCH-208ENST00000553846 WDR62O43379 1518 aa18.28■□□□□ 0.52
PRKCH-208ENST00000553846 MRC2Q9UBG0 1479 aa18.25■□□□□ 0.51
PRKCH-208ENST00000553846 TRIM41Q8WV44 630 aa18.24■□□□□ 0.51
PRKCH-208ENST00000553846 CADPSQ9ULU8 1353 aa18.22■□□□□ 0.51
PRKCH-208ENST00000553846 CEP164Q9UPV0 1460 aa18.07■□□□□ 0.48
PRKCH-208ENST00000553846 WIZO95785 1651 aa18.06■□□□□ 0.48
PRKCH-208ENST00000553846 FANCD2Q9BXW9 1451 aa18.02■□□□□ 0.48
PRKCH-208ENST00000553846 CFTRP13569 1480 aa18■□□□□ 0.47
PRKCH-208ENST00000553846 URB2Q14146 1524 aaKnown RBP17.97■□□□□ 0.47
PRKCH-208ENST00000553846 OSCARQ8IYS5 282 aa17.94■□□□□ 0.46
PRKCH-208ENST00000553846 RIMBP3CA6NJZ7 1639 aa17.9■□□□□ 0.46
PRKCH-208ENST00000553846 RIMBP3BA6NNM3 1639 aa17.9■□□□□ 0.46
PRKCH-208ENST00000553846 RIMBP3Q9UFD9 1639 aa17.9■□□□□ 0.46
PRKCH-208ENST00000553846 TOP2AP11388 1531 aaKnown RBP17.82■□□□□ 0.44
PRKCH-208ENST00000553846 ARHGEF11O15085 1522 aa17.81■□□□□ 0.44
PRKCH-208ENST00000553846 PRDM2Q13029 1718 aa17.8■□□□□ 0.44
PRKCH-208ENST00000553846 ZNF608Q9ULD9 1512 aaPredicted RBP17.78■□□□□ 0.44
PRKCH-208ENST00000553846 RSF1Q96T23 1441 aaPredicted RBP17.78■□□□□ 0.44
PRKCH-208ENST00000553846 IFT140Q96RY7 1462 aa17.74■□□□□ 0.43
PRKCH-208ENST00000553846 EIF4G3O43432 1585 aaKnown RBP17.68■□□□□ 0.42
PRKCH-208ENST00000553846 TOPBP1Q92547 1522 aa17.67■□□□□ 0.42
PRKCH-208ENST00000553846 ARAP1Q96P48 1450 aa17.63■□□□□ 0.41
PRKCH-208ENST00000553846 TARBP1Q13395 1621 aaKnown RBP17.61■□□□□ 0.41
PRKCH-208ENST00000553846 CHD1O14646 1710 aa17.61■□□□□ 0.41
PRKCH-208ENST00000553846 CCDC88BA6NC98 1476 aa17.59■□□□□ 0.41
PRKCH-208ENST00000553846 DNMBPQ6XZF7 1577 aa17.57■□□□□ 0.4
PRKCH-208ENST00000553846 ABCC8Q09428 1581 aa17.54■□□□□ 0.4
PRKCH-208ENST00000553846 CYB5RLQ6IPT4 315 aa17.53■□□□□ 0.4
PRKCH-208ENST00000553846 AQRO60306 1485 aaKnown RBP eCLIP17.51■□□□□ 0.39
PRKCH-208ENST00000553846 POLA1P09884 1462 aaPredicted RBP17.47■□□□□ 0.39
PRKCH-208ENST00000553846 CLASP1Q7Z460 1538 aa17.47■□□□□ 0.39
PRKCH-208ENST00000553846 RAD54L2Q9Y4B4 1467 aa17.37■□□□□ 0.37
PRKCH-208ENST00000553846 WDR97A6NE52 1622 aa17.37■□□□□ 0.37
PRKCH-208ENST00000553846 TRHP20396 242 aaPredicted RBP17.37■□□□□ 0.37
PRKCH-208ENST00000553846 SNAPC4Q5SXM2 1469 aa17.35■□□□□ 0.37
PRKCH-208ENST00000553846 TDRD9Q8NDG6 1382 aaKnown RBP17.31■□□□□ 0.36
PRKCH-208ENST00000553846 MAGI1Q96QZ7 1491 aaPredicted RBP17.31■□□□□ 0.36
PRKCH-208ENST00000553846 SYNJ1O43426 1573 aa17.3■□□□□ 0.36
PRKCH-208ENST00000553846 FBLN2P98095 1184 aa17.29■□□□□ 0.36
PRKCH-208ENST00000553846 SOGA1O94964 1423 aa17.29■□□□□ 0.36
PRKCH-208ENST00000553846 FGD5Q6ZNL6 1462 aa17.28■□□□□ 0.36
PRKCH-208ENST00000553846 CUX1P39880 1505 aa17.25■□□□□ 0.35
PRKCH-208ENST00000553846 SYNJ2O15056 1496 aa17.24■□□□□ 0.35
PRKCH-208ENST00000553846 GRIN2BQ13224 1484 aa17.23■□□□□ 0.35
PRKCH-208ENST00000553846 GAPVD1Q14C86 1478 aa17.19■□□□□ 0.34
PRKCH-208ENST00000553846 PBRM1Q86U86 1689 aa17.18■□□□□ 0.34
PRKCH-208ENST00000553846 ABCA5Q8WWZ7 1642 aa17.15■□□□□ 0.34
PRKCH-208ENST00000553846 CHMP7Q8WUX9 453 aaPredicted RBP17.15■□□□□ 0.34
PRKCH-208ENST00000553846 ERCC6L2Q5T890 1561 aa17.13■□□□□ 0.33
PRKCH-208ENST00000553846 AEBP2Q6ZN18 517 aaPredicted RBP17.12■□□□□ 0.33
PRKCH-208ENST00000553846 ABCA10Q8WWZ4 1543 aa17.09■□□□□ 0.33
PRKCH-208ENST00000553846 SHROOM2Q13796 1616 aa17.05■□□□□ 0.32
PRKCH-208ENST00000553846 NUP160Q12769 1436 aa17.04■□□□□ 0.32
PRKCH-208ENST00000553846 CEP170Q5SW79 1584 aa17.04■□□□□ 0.32
PRKCH-208ENST00000553846 GRIN2AQ12879 1464 aa17.04■□□□□ 0.32
PRKCH-208ENST00000553846 ADAMTS12P58397 1594 aa17.02■□□□□ 0.32
PRKCH-208ENST00000553846 KIF13AQ9H1H9 1805 aa17.01■□□□□ 0.31
PRKCH-208ENST00000553846 FHAD1B1AJZ9 1412 aa16.88■□□□□ 0.29
PRKCH-208ENST00000553846 BIVM-ERCC5R4GMW8 1640 aa16.88■□□□□ 0.29
PRKCH-208ENST00000553846 WRNQ14191 1432 aaPredicted RBP eCLIP16.87■□□□□ 0.29
PRKCH-208ENST00000553846 ERICH3Q5RHP9 1530 aa16.86■□□□□ 0.29
PRKCH-208ENST00000553846 TOP2BQ02880 1626 aa16.85■□□□□ 0.29
PRKCH-208ENST00000553846 MAPKBP1O60336 1514 aa16.82■□□□□ 0.28
PRKCH-208ENST00000553846 ABCC10Q5T3U5 1492 aa16.82■□□□□ 0.28
PRKCH-208ENST00000553846 DIP2BQ9P265 1576 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms