RNA–Protein interactions for RNA: ENST00000553778.6

CFAP54-204, Transcript of cilia and flagella associated protein 54, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene CFAP54, Length 1,967 nt, Biotype non stop decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54-204ENST00000553778 NISCHQ9Y2I1 1504 aa21.78■■□□□ 1.08
CFAP54-204ENST00000553778 CCDC180Q9P1Z9 1646 aa19.24■□□□□ 0.67
CFAP54-204ENST00000553778 ABCC9O60706 1549 aa18.75■□□□□ 0.59
CFAP54-204ENST00000553778 DCAF8L2P0C7V8 631 aa18.28■□□□□ 0.52
CFAP54-204ENST00000553778 ZCCHC6Q5VYS8 1495 aaKnown RBP18.14■□□□□ 0.49
CFAP54-204ENST00000553778 NACADO15069 1562 aa18.11■□□□□ 0.49
CFAP54-204ENST00000553778 RB1CC1Q8TDY2 1594 aa18.09■□□□□ 0.49
CFAP54-204ENST00000553778 MYO15BQ96JP2 1530 aa18.04■□□□□ 0.48
CFAP54-204ENST00000553778 DCAF1Q9Y4B6 1507 aa18.01■□□□□ 0.47
CFAP54-204ENST00000553778 UNC13AQ9UPW8 1703 aa17.61■□□□□ 0.41
CFAP54-204ENST00000553778 PABPN1Q86U42 306 aaKnown RBP eCLIP17.6■□□□□ 0.41
CFAP54-204ENST00000553778 SCRIBQ14160 1630 aa17.6■□□□□ 0.41
CFAP54-204ENST00000553778 BICRAQ9NZM4 1560 aa17.49■□□□□ 0.39
CFAP54-204ENST00000553778 SHROOM4Q9ULL8 1493 aa17.34■□□□□ 0.37
CFAP54-204ENST00000553778 DNAJC5BQ9UF47 199 aa17.1■□□□□ 0.33
CFAP54-204ENST00000553778 PELP1Q8IZL8 1130 aaKnown RBP17.07■□□□□ 0.32
CFAP54-204ENST00000553778 EIF4G1Q04637 1599 aaKnown RBP17.05■□□□□ 0.32
CFAP54-204ENST00000553778 AEBP2Q6ZN18 517 aaPredicted RBP17.02■□□□□ 0.32
CFAP54-204ENST00000553778 CECR2Q9BXF3 1484 aa16.95■□□□□ 0.3
CFAP54-204ENST00000553778 CC2D2AQ9P2K1 1620 aa16.94■□□□□ 0.3
CFAP54-204ENST00000553778 BAZ1AQ9NRL2 1556 aaPredicted RBP16.87■□□□□ 0.29
CFAP54-204ENST00000553778 HRCP23327 699 aa16.85■□□□□ 0.29
CFAP54-204ENST00000553778 SMARCA4P51532 1647 aa16.84■□□□□ 0.29
CFAP54-204ENST00000553778 CHIC1Q5VXU3 224 aa16.82■□□□□ 0.28
CFAP54-204ENST00000553778 MROH2BQ7Z745 1585 aa16.78■□□□□ 0.28
CFAP54-204ENST00000553778 ATAD2BQ9ULI0 1458 aa16.74■□□□□ 0.27
CFAP54-204ENST00000553778 NCAPD3P42695 1498 aa16.72■□□□□ 0.27
CFAP54-204ENST00000553778 SMARCA2P51531 1590 aa16.72■□□□□ 0.27
CFAP54-204ENST00000553778 PEG3Q9GZU2 1588 aa16.67■□□□□ 0.26
CFAP54-204ENST00000553778 RSF1Q96T23 1441 aaPredicted RBP16.66■□□□□ 0.26
CFAP54-204ENST00000553778 MYT1Q01538 1121 aa16.64■□□□□ 0.25
CFAP54-204ENST00000553778 BAZ1BQ9UIG0 1483 aaKnown RBP16.62■□□□□ 0.25
CFAP54-204ENST00000553778 HMGXB3Q12766 1538 aa16.61■□□□□ 0.25
CFAP54-204ENST00000553778 WIZO95785 1651 aa16.6■□□□□ 0.25
CFAP54-204ENST00000553778 SUPT5HO00267 1087 aaKnown RBP16.44■□□□□ 0.22
CFAP54-204ENST00000553778 TOP2AP11388 1531 aaKnown RBP16.42■□□□□ 0.22
CFAP54-204ENST00000553778 CCDC88BA6NC98 1476 aa16.27■□□□□ 0.2
CFAP54-204ENST00000553778 CADPSQ9ULU8 1353 aa16.27■□□□□ 0.2
CFAP54-204ENST00000553778 NESP48681 1621 aa16.25■□□□□ 0.19
CFAP54-204ENST00000553778 LAMC3Q9Y6N6 1575 aa16.24■□□□□ 0.19
CFAP54-204ENST00000553778 PDS5BQ9NTI5 1447 aa16.18■□□□□ 0.18
CFAP54-204ENST00000553778 ERCC6Q03468 1493 aa16.18■□□□□ 0.18
CFAP54-204ENST00000553778 CFTRP13569 1480 aa16.17■□□□□ 0.18
CFAP54-204ENST00000553778 PPARGC1BQ86YN6 1023 aaKnown RBP16.12■□□□□ 0.17
CFAP54-204ENST00000553778 PCGF6Q9BYE7 350 aa16.08■□□□□ 0.16
CFAP54-204ENST00000553778 FANCD2Q9BXW9 1451 aa16.05■□□□□ 0.16
CFAP54-204ENST00000553778 KIF21AQ7Z4S6 1674 aa16.03■□□□□ 0.16
CFAP54-204ENST00000553778 CEP164Q9UPV0 1460 aa16.02■□□□□ 0.15
CFAP54-204ENST00000553778 SCAF1Q9H7N4 1312 aaKnown RBP16■□□□□ 0.15
CFAP54-204ENST00000553778 PRDM2Q13029 1718 aa15.98■□□□□ 0.15
CFAP54-204ENST00000553778 MRC2Q9UBG0 1479 aa15.95■□□□□ 0.14
CFAP54-204ENST00000553778 THOC2Q8NI27 1593 aaKnown RBP15.93■□□□□ 0.14
CFAP54-204ENST00000553778 CUX2O14529 1486 aa15.92■□□□□ 0.14
CFAP54-204ENST00000553778 ZEB1P37275 1124 aaPredicted RBP15.9■□□□□ 0.14
CFAP54-204ENST00000553778 WDR62O43379 1518 aa15.87■□□□□ 0.13
CFAP54-204ENST00000553778 URB2Q14146 1524 aaKnown RBP15.86■□□□□ 0.13
CFAP54-204ENST00000553778 ABCC8Q09428 1581 aa15.85■□□□□ 0.13
CFAP54-204ENST00000553778 TTBK1Q5TCY1 1321 aaPredicted RBP15.81■□□□□ 0.12
CFAP54-204ENST00000553778 TOPBP1Q92547 1522 aa15.8■□□□□ 0.12
CFAP54-204ENST00000553778 DNMBPQ6XZF7 1577 aa15.78■□□□□ 0.12
CFAP54-204ENST00000553778 TRIM26Q12899 539 aaPredicted RBP15.74■□□□□ 0.11
CFAP54-204ENST00000553778 WRNQ14191 1432 aaPredicted RBP eCLIP15.72■□□□□ 0.11
CFAP54-204ENST00000553778 CUX1P39880 1505 aa15.72■□□□□ 0.11
CFAP54-204ENST00000553778 IFT140Q96RY7 1462 aa15.68■□□□□ 0.1
CFAP54-204ENST00000553778 POLA1P09884 1462 aaPredicted RBP15.68■□□□□ 0.1
CFAP54-204ENST00000553778 SOGA1O94964 1423 aa15.67■□□□□ 0.1
CFAP54-204ENST00000553778 FGD5Q6ZNL6 1462 aa15.66■□□□□ 0.1
CFAP54-204ENST00000553778 TOP2BQ02880 1626 aa15.63■□□□□ 0.09
CFAP54-204ENST00000553778 RAD54L2Q9Y4B4 1467 aa15.63■□□□□ 0.09
CFAP54-204ENST00000553778 SYNJ1O43426 1573 aa15.62■□□□□ 0.09
CFAP54-204ENST00000553778 ACIN1Q9UKV3 1341 aaKnown RBP15.62■□□□□ 0.09
CFAP54-204ENST00000553778 BIVM-ERCC5R4GMW8 1640 aa15.61■□□□□ 0.09
CFAP54-204ENST00000553778 TARBP1Q13395 1621 aaKnown RBP15.59■□□□□ 0.09
CFAP54-204ENST00000553778 ZNF608Q9ULD9 1512 aaPredicted RBP15.58■□□□□ 0.08
CFAP54-204ENST00000553778 TDRD9Q8NDG6 1382 aaKnown RBP15.56■□□□□ 0.08
CFAP54-204ENST00000553778 AQRO60306 1485 aaKnown RBP eCLIP15.55■□□□□ 0.08
CFAP54-204ENST00000553778 TRIM41Q8WV44 630 aa15.54■□□□□ 0.08
CFAP54-204ENST00000553778 ABCA10Q8WWZ4 1543 aa15.52■□□□□ 0.07
CFAP54-204ENST00000553778 EIF4G3O43432 1585 aaKnown RBP15.5■□□□□ 0.07
CFAP54-204ENST00000553778 WDR97A6NE52 1622 aa15.48■□□□□ 0.07
CFAP54-204ENST00000553778 GAPVD1Q14C86 1478 aa15.46■□□□□ 0.07
CFAP54-204ENST00000553778 GRIN2BQ13224 1484 aa15.44■□□□□ 0.06
CFAP54-204ENST00000553778 CENPBP07199 599 aaPredicted RBP15.43■□□□□ 0.06
CFAP54-204ENST00000553778 NEUROD1Q13562 356 aa15.42■□□□□ 0.06
CFAP54-204ENST00000553778 ABCA5Q8WWZ7 1642 aa15.4■□□□□ 0.06
CFAP54-204ENST00000553778 FBLN2P98095 1184 aa15.4■□□□□ 0.06
CFAP54-204ENST00000553778 KIF27Q86VH2 1401 aa15.4■□□□□ 0.06
CFAP54-204ENST00000553778 SNAPC4Q5SXM2 1469 aa15.38■□□□□ 0.05
CFAP54-204ENST00000553778 OSCARQ8IYS5 282 aa15.38■□□□□ 0.05
CFAP54-204ENST00000553778 CHMP7Q8WUX9 453 aaPredicted RBP15.38■□□□□ 0.05
CFAP54-204ENST00000553778 GTF3C3Q9Y5Q9 886 aa15.38■□□□□ 0.05
CFAP54-204ENST00000553778 MAGI1Q96QZ7 1491 aaPredicted RBP15.37■□□□□ 0.05
CFAP54-204ENST00000553778 PBRM1Q86U86 1689 aa15.36■□□□□ 0.05
CFAP54-204ENST00000553778 ERICH3Q5RHP9 1530 aa15.34■□□□□ 0.05
CFAP54-204ENST00000553778 IGF1RP08069 1367 aa15.32■□□□□ 0.04
CFAP54-204ENST00000553778 DNAJC5Q9H3Z4 198 aa15.31■□□□□ 0.04
CFAP54-204ENST00000553778 SYNJ2O15056 1496 aa15.31■□□□□ 0.04
CFAP54-204ENST00000553778 FHAD1B1AJZ9 1412 aa15.29■□□□□ 0.04
CFAP54-204ENST00000553778 RUSC2Q8N2Y8 1516 aa15.27■□□□□ 0.04
CFAP54-204ENST00000553778 CHD1O14646 1710 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms