RNA–Protein interactions for RNA: ENST00000553751.1

FOXA1-203, Transcript of forkhead box A1, humanhuman

TSL 4

Gene FOXA1, Length 507 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-203ENST00000553751 NISCHQ9Y2I1 1504 aa49.9■■■■■ 5.58
FOXA1-203ENST00000553751 CCDC180Q9P1Z9 1646 aa44.44■■■■■ 4.7
FOXA1-203ENST00000553751 ABCC9O60706 1549 aa43.56■■■■■ 4.56
FOXA1-203ENST00000553751 RB1CC1Q8TDY2 1594 aa41.86■■■■■ 4.29
FOXA1-203ENST00000553751 NACADO15069 1562 aa41.78■■■■■ 4.28
FOXA1-203ENST00000553751 DCAF8L2P0C7V8 631 aa41.6■■■■■ 4.25
FOXA1-203ENST00000553751 ZCCHC6Q5VYS8 1495 aaKnown RBP41.57■■■■■ 4.25
FOXA1-203ENST00000553751 MYO15BQ96JP2 1530 aa41.52■■■■■ 4.24
FOXA1-203ENST00000553751 DCAF1Q9Y4B6 1507 aa41.29■■■■■ 4.2
FOXA1-203ENST00000553751 UNC13AQ9UPW8 1703 aa40.94■■■■■ 4.14
FOXA1-203ENST00000553751 PABPN1Q86U42 306 aaKnown RBP eCLIP40.65■■■■■ 4.1
FOXA1-203ENST00000553751 BICRAQ9NZM4 1560 aa40.64■■■■■ 4.1
FOXA1-203ENST00000553751 SCRIBQ14160 1630 aa40.53■■■■■ 4.08
FOXA1-203ENST00000553751 SHROOM4Q9ULL8 1493 aa40.19■■■■■ 4.03
FOXA1-203ENST00000553751 DNAJC5BQ9UF47 199 aa40.08■■■■■ 4.01
FOXA1-203ENST00000553751 EIF4G1Q04637 1599 aaKnown RBP39.56■■■■□ 3.92
FOXA1-203ENST00000553751 CC2D2AQ9P2K1 1620 aa39.42■■■■□ 3.9
FOXA1-203ENST00000553751 CECR2Q9BXF3 1484 aa39.16■■■■□ 3.86
FOXA1-203ENST00000553751 SMARCA4P51532 1647 aa38.76■■■■□ 3.8
FOXA1-203ENST00000553751 BAZ1AQ9NRL2 1556 aaPredicted RBP38.68■■■■□ 3.78
FOXA1-203ENST00000553751 ATAD2BQ9ULI0 1458 aa38.56■■■■□ 3.76
FOXA1-203ENST00000553751 NCAPD3P42695 1498 aa38.55■■■■□ 3.76
FOXA1-203ENST00000553751 SMARCA2P51531 1590 aa38.5■■■■□ 3.75
FOXA1-203ENST00000553751 MROH2BQ7Z745 1585 aa38.46■■■■□ 3.75
FOXA1-203ENST00000553751 PEG3Q9GZU2 1588 aa38.4■■■■□ 3.74
FOXA1-203ENST00000553751 HMGXB3Q12766 1538 aa38.38■■■■□ 3.74
FOXA1-203ENST00000553751 BAZ1BQ9UIG0 1483 aaKnown RBP38.23■■■■□ 3.71
FOXA1-203ENST00000553751 WIZO95785 1651 aa38.04■■■■□ 3.68
FOXA1-203ENST00000553751 RSF1Q96T23 1441 aaPredicted RBP37.96■■■■□ 3.67
FOXA1-203ENST00000553751 NESP48681 1621 aa37.69■■■■□ 3.62
FOXA1-203ENST00000553751 TOP2AP11388 1531 aaKnown RBP37.64■■■■□ 3.62
FOXA1-203ENST00000553751 LAMC3Q9Y6N6 1575 aa37.56■■■■□ 3.6
FOXA1-203ENST00000553751 ERCC6Q03468 1493 aa37.53■■■■□ 3.6
FOXA1-203ENST00000553751 CADPSQ9ULU8 1353 aa37.41■■■■□ 3.58
FOXA1-203ENST00000553751 PDS5BQ9NTI5 1447 aa37.27■■■■□ 3.56
FOXA1-203ENST00000553751 KIF21AQ7Z4S6 1674 aa37.25■■■■□ 3.55
FOXA1-203ENST00000553751 CUX2O14529 1486 aa37.21■■■■□ 3.55
FOXA1-203ENST00000553751 CFTRP13569 1480 aa37.19■■■■□ 3.54
FOXA1-203ENST00000553751 THOC2Q8NI27 1593 aaKnown RBP37.17■■■■□ 3.54
FOXA1-203ENST00000553751 CCDC88BA6NC98 1476 aa37.17■■■■□ 3.54
FOXA1-203ENST00000553751 FANCD2Q9BXW9 1451 aa37■■■■□ 3.51
FOXA1-203ENST00000553751 CEP164Q9UPV0 1460 aa36.95■■■■□ 3.51
FOXA1-203ENST00000553751 MRC2Q9UBG0 1479 aa36.94■■■■□ 3.5
FOXA1-203ENST00000553751 PRDM2Q13029 1718 aa36.91■■■■□ 3.5
FOXA1-203ENST00000553751 WDR62O43379 1518 aa36.85■■■■□ 3.49
FOXA1-203ENST00000553751 SUPT5HO00267 1087 aaKnown RBP36.82■■■■□ 3.48
FOXA1-203ENST00000553751 URB2Q14146 1524 aaKnown RBP36.65■■■■□ 3.46
FOXA1-203ENST00000553751 TOPBP1Q92547 1522 aa36.39■■■■□ 3.42
FOXA1-203ENST00000553751 DNMBPQ6XZF7 1577 aa36.36■■■■□ 3.41
FOXA1-203ENST00000553751 ABCC8Q09428 1581 aa36.34■■■■□ 3.41
FOXA1-203ENST00000553751 IFT140Q96RY7 1462 aa36.19■■■■□ 3.38
FOXA1-203ENST00000553751 DNAJC5Q9H3Z4 198 aa36.17■■■■□ 3.38
FOXA1-203ENST00000553751 CUX1P39880 1505 aa36.09■■■■□ 3.37
FOXA1-203ENST00000553751 POLA1P09884 1462 aaPredicted RBP36.09■■■■□ 3.37
FOXA1-203ENST00000553751 ZNF608Q9ULD9 1512 aaPredicted RBP36.06■■■■□ 3.36
FOXA1-203ENST00000553751 TARBP1Q13395 1621 aaKnown RBP36.04■■■■□ 3.36
FOXA1-203ENST00000553751 FGD5Q6ZNL6 1462 aa35.98■■■■□ 3.35
FOXA1-203ENST00000553751 EIF4G3O43432 1585 aaKnown RBP35.93■■■■□ 3.34
FOXA1-203ENST00000553751 RAD54L2Q9Y4B4 1467 aa35.92■■■■□ 3.34
FOXA1-203ENST00000553751 SOGA1O94964 1423 aa35.89■■■■□ 3.34
FOXA1-203ENST00000553751 AQRO60306 1485 aaKnown RBP eCLIP35.81■■■■□ 3.322e-7■■■■■ 44
FOXA1-203ENST00000553751 WRNQ14191 1432 aaPredicted RBP eCLIP35.78■■■■□ 3.32
FOXA1-203ENST00000553751 TOP2BQ02880 1626 aa35.75■■■■□ 3.31
FOXA1-203ENST00000553751 BIVM-ERCC5R4GMW8 1640 aa35.75■■■■□ 3.31
FOXA1-203ENST00000553751 SYNJ1O43426 1573 aa35.75■■■■□ 3.31
FOXA1-203ENST00000553751 WDR97A6NE52 1622 aa35.73■■■■□ 3.31
FOXA1-203ENST00000553751 TDRD9Q8NDG6 1382 aaKnown RBP35.71■■■■□ 3.31
FOXA1-203ENST00000553751 ABCA10Q8WWZ4 1543 aa35.62■■■■□ 3.29
FOXA1-203ENST00000553751 OSCARQ8IYS5 282 aa35.58■■■■□ 3.29
FOXA1-203ENST00000553751 ABCA5Q8WWZ7 1642 aa35.53■■■■□ 3.28
FOXA1-203ENST00000553751 GRIN2BQ13224 1484 aa35.51■■■■□ 3.28
FOXA1-203ENST00000553751 SNAPC4Q5SXM2 1469 aa35.5■■■■□ 3.27
FOXA1-203ENST00000553751 GAPVD1Q14C86 1478 aa35.49■■■■□ 3.27
FOXA1-203ENST00000553751 CHD1O14646 1710 aa35.49■■■■□ 3.27
FOXA1-203ENST00000553751 PBRM1Q86U86 1689 aa35.46■■■■□ 3.27
FOXA1-203ENST00000553751 MAGI1Q96QZ7 1491 aaPredicted RBP35.44■■■■□ 3.26
FOXA1-203ENST00000553751 FBLN2P98095 1184 aa35.33■■■■□ 3.25
FOXA1-203ENST00000553751 SYNJ2O15056 1496 aa35.31■■■■□ 3.24
FOXA1-203ENST00000553751 CHMP7Q8WUX9 453 aaPredicted RBP35.22■■■■□ 3.23
FOXA1-203ENST00000553751 ADAMTS12P58397 1594 aa35.2■■■■□ 3.23
FOXA1-203ENST00000553751 ERICH3Q5RHP9 1530 aa35.19■■■■□ 3.22
FOXA1-203ENST00000553751 CLASP1Q7Z460 1538 aa35.11■■■■□ 3.21
FOXA1-203ENST00000553751 RIMBP3CA6NJZ7 1639 aa35.1■■■■□ 3.21
FOXA1-203ENST00000553751 RIMBP3BA6NNM3 1639 aa35.1■■■■□ 3.21
FOXA1-203ENST00000553751 RIMBP3Q9UFD9 1639 aa35.1■■■■□ 3.21
FOXA1-203ENST00000553751 ARHGEF11O15085 1522 aa35.09■■■■□ 3.21
FOXA1-203ENST00000553751 FHAD1B1AJZ9 1412 aa35.08■■■■□ 3.21
FOXA1-203ENST00000553751 GRIN2AQ12879 1464 aa35.07■■■■□ 3.2
FOXA1-203ENST00000553751 KIF27Q86VH2 1401 aa35.03■■■■□ 3.2
FOXA1-203ENST00000553751 NUP160Q12769 1436 aa34.93■■■■□ 3.18
FOXA1-203ENST00000553751 CEP170Q5SW79 1584 aa34.92■■■■□ 3.18
FOXA1-203ENST00000553751 IGF1RP08069 1367 aa34.9■■■■□ 3.18
FOXA1-203ENST00000553751 TRIM41Q8WV44 630 aa34.9■■■■□ 3.18
FOXA1-203ENST00000553751 CUL7Q14999 1698 aa34.86■■■■□ 3.17
FOXA1-203ENST00000553751 ARAP1Q96P48 1450 aa34.81■■■■□ 3.16
FOXA1-203ENST00000553751 RUSC2Q8N2Y8 1516 aa34.71■■■■□ 3.15
FOXA1-203ENST00000553751 SHROOM2Q13796 1616 aa34.7■■■■□ 3.15
FOXA1-203ENST00000553751 CARMIL1Q5VZK9 1371 aa34.68■■■■□ 3.14
FOXA1-203ENST00000553751 CYB5RLQ6IPT4 315 aa34.68■■■■□ 3.14
FOXA1-203ENST00000553751 ERCC6L2Q5T890 1561 aa34.62■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms