RNA–Protein interactions for RNA: ENST00000553744.1

TMEM253-202, Transcript of transmembrane protein 253, humanhuman

TSL 3

Gene TMEM253, Length 195 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM253-202ENST00000553744 NISCHQ9Y2I1 1504 aa28.83■■■□□ 2.21
TMEM253-202ENST00000553744 CCDC180Q9P1Z9 1646 aa25.63■■□□□ 1.69
TMEM253-202ENST00000553744 ABCC9O60706 1549 aa24.97■■□□□ 1.59
TMEM253-202ENST00000553744 RB1CC1Q8TDY2 1594 aa24.07■■□□□ 1.44
TMEM253-202ENST00000553744 NACADO15069 1562 aa24.06■■□□□ 1.44
TMEM253-202ENST00000553744 ZCCHC6Q5VYS8 1495 aaKnown RBP24.06■■□□□ 1.44
TMEM253-202ENST00000553744 DCAF8L2P0C7V8 631 aa23.98■■□□□ 1.43
TMEM253-202ENST00000553744 MYO15BQ96JP2 1530 aa23.95■■□□□ 1.43
TMEM253-202ENST00000553744 DCAF1Q9Y4B6 1507 aa23.88■■□□□ 1.41
TMEM253-202ENST00000553744 DNAJC5BQ9UF47 199 aa23.81■■□□□ 1.4
TMEM253-202ENST00000553744 UNC13AQ9UPW8 1703 aa23.51■■□□□ 1.35
TMEM253-202ENST00000553744 SCRIBQ14160 1630 aa23.37■■□□□ 1.33
TMEM253-202ENST00000553744 BICRAQ9NZM4 1560 aa23.35■■□□□ 1.33
TMEM253-202ENST00000553744 PABPN1Q86U42 306 aaKnown RBP eCLIP23.32■■□□□ 1.32
TMEM253-202ENST00000553744 SHROOM4Q9ULL8 1493 aa23.14■■□□□ 1.29
TMEM253-202ENST00000553744 EIF4G1Q04637 1599 aaKnown RBP22.72■■□□□ 1.23
TMEM253-202ENST00000553744 CC2D2AQ9P2K1 1620 aa22.6■■□□□ 1.21
TMEM253-202ENST00000553744 CECR2Q9BXF3 1484 aa22.44■■□□□ 1.18
TMEM253-202ENST00000553744 SMARCA4P51532 1647 aa22.37■■□□□ 1.17
TMEM253-202ENST00000553744 BAZ1AQ9NRL2 1556 aaPredicted RBP22.35■■□□□ 1.17
TMEM253-202ENST00000553744 DNAJC5Q9H3Z4 198 aa22.25■■□□□ 1.15
TMEM253-202ENST00000553744 ATAD2BQ9ULI0 1458 aa22.22■■□□□ 1.15
TMEM253-202ENST00000553744 MROH2BQ7Z745 1585 aa22.21■■□□□ 1.15
TMEM253-202ENST00000553744 SMARCA2P51531 1590 aa22.21■■□□□ 1.15
TMEM253-202ENST00000553744 NCAPD3P42695 1498 aa22.2■■□□□ 1.14
TMEM253-202ENST00000553744 PEG3Q9GZU2 1588 aa22.16■■□□□ 1.14
TMEM253-202ENST00000553744 HMGXB3Q12766 1538 aa22.12■■□□□ 1.13
TMEM253-202ENST00000553744 BAZ1BQ9UIG0 1483 aaKnown RBP22.04■■□□□ 1.12
TMEM253-202ENST00000553744 WIZO95785 1651 aa21.98■■□□□ 1.11
TMEM253-202ENST00000553744 RSF1Q96T23 1441 aaPredicted RBP21.97■■□□□ 1.11
TMEM253-202ENST00000553744 TOP2AP11388 1531 aaKnown RBP21.77■■□□□ 1.08
TMEM253-202ENST00000553744 NESP48681 1621 aa21.63■■□□□ 1.05
TMEM253-202ENST00000553744 LAMC3Q9Y6N6 1575 aa21.61■■□□□ 1.05
TMEM253-202ENST00000553744 CUX2O14529 1486 aa21.55■■□□□ 1.04
TMEM253-202ENST00000553744 CADPSQ9ULU8 1353 aa21.54■■□□□ 1.04
TMEM253-202ENST00000553744 ERCC6Q03468 1493 aa21.53■■□□□ 1.04
TMEM253-202ENST00000553744 CCDC88BA6NC98 1476 aa21.49■■□□□ 1.03
TMEM253-202ENST00000553744 PDS5BQ9NTI5 1447 aa21.45■■□□□ 1.02
TMEM253-202ENST00000553744 CFTRP13569 1480 aa21.45■■□□□ 1.02
TMEM253-202ENST00000553744 SUPT5HO00267 1087 aaKnown RBP21.42■■□□□ 1.02
TMEM253-202ENST00000553744 KIF21AQ7Z4S6 1674 aa21.39■■□□□ 1.01
TMEM253-202ENST00000553744 THOC2Q8NI27 1593 aaKnown RBP21.33■■□□□ 1.01
TMEM253-202ENST00000553744 FANCD2Q9BXW9 1451 aa21.3■■□□□ 1
TMEM253-202ENST00000553744 PRDM2Q13029 1718 aa21.29■■□□□ 1
TMEM253-202ENST00000553744 CEP164Q9UPV0 1460 aa21.28■■□□□ 1
TMEM253-202ENST00000553744 MRC2Q9UBG0 1479 aa21.24■□□□□ 0.99
TMEM253-202ENST00000553744 WDR62O43379 1518 aa21.18■□□□□ 0.98
TMEM253-202ENST00000553744 URB2Q14146 1524 aaKnown RBP21.09■□□□□ 0.97
TMEM253-202ENST00000553744 TOPBP1Q92547 1522 aa20.98■□□□□ 0.95
TMEM253-202ENST00000553744 ABCC8Q09428 1581 aa20.97■□□□□ 0.95
TMEM253-202ENST00000553744 DNMBPQ6XZF7 1577 aa20.97■□□□□ 0.95
TMEM253-202ENST00000553744 TRIM41Q8WV44 630 aa20.9■□□□□ 0.94
TMEM253-202ENST00000553744 CUX1P39880 1505 aa20.84■□□□□ 0.93
TMEM253-202ENST00000553744 IFT140Q96RY7 1462 aa20.82■□□□□ 0.92
TMEM253-202ENST00000553744 POLA1P09884 1462 aaPredicted RBP20.81■□□□□ 0.92
TMEM253-202ENST00000553744 FGD5Q6ZNL6 1462 aa20.76■□□□□ 0.91
TMEM253-202ENST00000553744 TARBP1Q13395 1621 aaKnown RBP20.75■□□□□ 0.91
TMEM253-202ENST00000553744 WRNQ14191 1432 aaPredicted RBP eCLIP20.72■□□□□ 0.91
TMEM253-202ENST00000553744 ZNF608Q9ULD9 1512 aaPredicted RBP20.72■□□□□ 0.91
TMEM253-202ENST00000553744 SOGA1O94964 1423 aa20.7■□□□□ 0.9
TMEM253-202ENST00000553744 RAD54L2Q9Y4B4 1467 aa20.69■□□□□ 0.9
TMEM253-202ENST00000553744 BIVM-ERCC5R4GMW8 1640 aa20.69■□□□□ 0.9
TMEM253-202ENST00000553744 SYNJ1O43426 1573 aa20.68■□□□□ 0.9
TMEM253-202ENST00000553744 TOP2BQ02880 1626 aa20.68■□□□□ 0.9
TMEM253-202ENST00000553744 EIF4G3O43432 1585 aaKnown RBP20.67■□□□□ 0.9
TMEM253-202ENST00000553744 WDR97A6NE52 1622 aa20.61■□□□□ 0.89
TMEM253-202ENST00000553744 AQRO60306 1485 aaKnown RBP eCLIP20.6■□□□□ 0.89
TMEM253-202ENST00000553744 ABCA10Q8WWZ4 1543 aa20.57■□□□□ 0.88
TMEM253-202ENST00000553744 TDRD9Q8NDG6 1382 aaKnown RBP20.56■□□□□ 0.88
TMEM253-202ENST00000553744 OSCARQ8IYS5 282 aa20.5■□□□□ 0.87
TMEM253-202ENST00000553744 ABCA5Q8WWZ7 1642 aa20.49■□□□□ 0.87
TMEM253-202ENST00000553744 GRIN2BQ13224 1484 aa20.47■□□□□ 0.87
TMEM253-202ENST00000553744 GAPVD1Q14C86 1478 aa20.47■□□□□ 0.87
TMEM253-202ENST00000553744 PBRM1Q86U86 1689 aa20.44■□□□□ 0.86
TMEM253-202ENST00000553744 SNAPC4Q5SXM2 1469 aa20.43■□□□□ 0.86
TMEM253-202ENST00000553744 MAGI1Q96QZ7 1491 aaPredicted RBP20.42■□□□□ 0.86
TMEM253-202ENST00000553744 CHD1O14646 1710 aa20.37■□□□□ 0.85
TMEM253-202ENST00000553744 SYNJ2O15056 1496 aa20.33■□□□□ 0.85
TMEM253-202ENST00000553744 ERICH3Q5RHP9 1530 aa20.32■□□□□ 0.84
TMEM253-202ENST00000553744 FBLN2P98095 1184 aa20.31■□□□□ 0.84
TMEM253-202ENST00000553744 ADAMTS12P58397 1594 aa20.29■□□□□ 0.84
TMEM253-202ENST00000553744 KIF27Q86VH2 1401 aa20.28■□□□□ 0.84
TMEM253-202ENST00000553744 CHMP7Q8WUX9 453 aaPredicted RBP20.27■□□□□ 0.84
TMEM253-202ENST00000553744 FHAD1B1AJZ9 1412 aa20.24■□□□□ 0.83
TMEM253-202ENST00000553744 RIMBP3CA6NJZ7 1639 aa20.21■□□□□ 0.83
TMEM253-202ENST00000553744 RIMBP3BA6NNM3 1639 aa20.21■□□□□ 0.83
TMEM253-202ENST00000553744 RIMBP3Q9UFD9 1639 aa20.21■□□□□ 0.83
TMEM253-202ENST00000553744 GRIN2AQ12879 1464 aa20.21■□□□□ 0.83
TMEM253-202ENST00000553744 IGF1RP08069 1367 aa20.18■□□□□ 0.82
TMEM253-202ENST00000553744 CLASP1Q7Z460 1538 aa20.17■□□□□ 0.82
TMEM253-202ENST00000553744 CUL7Q14999 1698 aa20.16■□□□□ 0.82
TMEM253-202ENST00000553744 ARHGEF11O15085 1522 aa20.13■□□□□ 0.81
TMEM253-202ENST00000553744 NUP160Q12769 1436 aa20.12■□□□□ 0.81
TMEM253-202ENST00000553744 CEP170Q5SW79 1584 aa20.11■□□□□ 0.81
TMEM253-202ENST00000553744 RUSC2Q8N2Y8 1516 aa20.1■□□□□ 0.81
TMEM253-202ENST00000553744 CARMIL1Q5VZK9 1371 aa20.07■□□□□ 0.8
TMEM253-202ENST00000553744 CHIC1Q5VXU3 224 aa20.03■□□□□ 0.8
TMEM253-202ENST00000553744 CYB5RLQ6IPT4 315 aa20.03■□□□□ 0.8
TMEM253-202ENST00000553744 RAPGEF2Q9Y4G8 1499 aa19.97■□□□□ 0.79
TMEM253-202ENST00000553744 SHROOM2Q13796 1616 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms