RNA–Protein interactions for RNA: ENST00000553719.5

PSEN1-208, Transcript of presenilin 1, humanhuman

TSL 2

Gene PSEN1, Length 712 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-208ENST00000553719 NISCHQ9Y2I1 1504 aa43.11■■■■■ 4.49
PSEN1-208ENST00000553719 CCDC180Q9P1Z9 1646 aa38.11■■■■□ 3.69
PSEN1-208ENST00000553719 ABCC9O60706 1549 aa36.61■■■■□ 3.45
PSEN1-208ENST00000553719 ZCCHC6Q5VYS8 1495 aaKnown RBP36.08■■■■□ 3.37
PSEN1-208ENST00000553719 DCAF1Q9Y4B6 1507 aa35.76■■■■□ 3.31
PSEN1-208ENST00000553719 MYO15BQ96JP2 1530 aa35.7■■■■□ 3.31
PSEN1-208ENST00000553719 NACADO15069 1562 aa35.64■■■■□ 3.3
PSEN1-208ENST00000553719 RB1CC1Q8TDY2 1594 aa35.51■■■■□ 3.28
PSEN1-208ENST00000553719 DCAF8L2P0C7V8 631 aa35.49■■■■□ 3.27
PSEN1-208ENST00000553719 UNC13AQ9UPW8 1703 aa34.8■■■■□ 3.16
PSEN1-208ENST00000553719 SCRIBQ14160 1630 aa34.74■■■■□ 3.15
PSEN1-208ENST00000553719 BICRAQ9NZM4 1560 aa34.52■■■■□ 3.12
PSEN1-208ENST00000553719 PABPN1Q86U42 306 aaKnown RBP eCLIP34.25■■■■□ 3.07
PSEN1-208ENST00000553719 SHROOM4Q9ULL8 1493 aa34.25■■■■□ 3.07
PSEN1-208ENST00000553719 EIF4G1Q04637 1599 aaKnown RBP33.51■■■□□ 2.95
PSEN1-208ENST00000553719 CECR2Q9BXF3 1484 aa33.5■■■□□ 2.95
PSEN1-208ENST00000553719 BAZ1AQ9NRL2 1556 aaPredicted RBP33.35■■■□□ 2.93
PSEN1-208ENST00000553719 SMARCA4P51532 1647 aa33.34■■■□□ 2.93
PSEN1-208ENST00000553719 MROH2BQ7Z745 1585 aa33.23■■■□□ 2.91
PSEN1-208ENST00000553719 CC2D2AQ9P2K1 1620 aa33.2■■■□□ 2.91
PSEN1-208ENST00000553719 DNAJC5BQ9UF47 199 aa33.1■■■□□ 2.89
PSEN1-208ENST00000553719 PEG3Q9GZU2 1588 aa33.07■■■□□ 2.88
PSEN1-208ENST00000553719 RSF1Q96T23 1441 aaPredicted RBP33.05■■■□□ 2.88
PSEN1-208ENST00000553719 ATAD2BQ9ULI0 1458 aa32.99■■■□□ 2.87
PSEN1-208ENST00000553719 SMARCA2P51531 1590 aa32.96■■■□□ 2.87
PSEN1-208ENST00000553719 WIZO95785 1651 aa32.89■■■□□ 2.86
PSEN1-208ENST00000553719 NCAPD3P42695 1498 aa32.89■■■□□ 2.86
PSEN1-208ENST00000553719 HMGXB3Q12766 1538 aa32.82■■■□□ 2.84
PSEN1-208ENST00000553719 BAZ1BQ9UIG0 1483 aaKnown RBP32.71■■■□□ 2.83
PSEN1-208ENST00000553719 TOP2AP11388 1531 aaKnown RBP32.6■■■□□ 2.81
PSEN1-208ENST00000553719 SUPT5HO00267 1087 aaKnown RBP32.46■■■□□ 2.79
PSEN1-208ENST00000553719 CCDC88BA6NC98 1476 aa32.17■■■□□ 2.74
PSEN1-208ENST00000553719 LAMC3Q9Y6N6 1575 aa31.92■■■□□ 2.7
PSEN1-208ENST00000553719 CADPSQ9ULU8 1353 aa31.92■■■□□ 2.7
PSEN1-208ENST00000553719 CFTRP13569 1480 aa31.91■■■□□ 2.7
PSEN1-208ENST00000553719 NESP48681 1621 aa31.89■■■□□ 2.7
PSEN1-208ENST00000553719 PRDM2Q13029 1718 aa31.75■■■□□ 2.67
PSEN1-208ENST00000553719 PDS5BQ9NTI5 1447 aa31.62■■■□□ 2.65
PSEN1-208ENST00000553719 KIF21AQ7Z4S6 1674 aa31.57■■■□□ 2.65
PSEN1-208ENST00000553719 FANCD2Q9BXW9 1451 aa31.56■■■□□ 2.64
PSEN1-208ENST00000553719 ERCC6Q03468 1493 aa31.46■■■□□ 2.63
PSEN1-208ENST00000553719 CEP164Q9UPV0 1460 aa31.46■■■□□ 2.63
PSEN1-208ENST00000553719 THOC2Q8NI27 1593 aaKnown RBP31.37■■■□□ 2.61
PSEN1-208ENST00000553719 MRC2Q9UBG0 1479 aa31.31■■■□□ 2.6
PSEN1-208ENST00000553719 URB2Q14146 1524 aaKnown RBP31.25■■■□□ 2.59
PSEN1-208ENST00000553719 WDR62O43379 1518 aa31.24■■■□□ 2.59
PSEN1-208ENST00000553719 ABCC8Q09428 1581 aa31.18■■■□□ 2.58
PSEN1-208ENST00000553719 DNMBPQ6XZF7 1577 aa31.17■■■□□ 2.58
PSEN1-208ENST00000553719 CUX1P39880 1505 aa31.14■■■□□ 2.58
PSEN1-208ENST00000553719 TOPBP1Q92547 1522 aa31.14■■■□□ 2.58
PSEN1-208ENST00000553719 WRNQ14191 1432 aaPredicted RBP eCLIP31.11■■■□□ 2.57
PSEN1-208ENST00000553719 SYNJ1O43426 1573 aa31.07■■■□□ 2.56
PSEN1-208ENST00000553719 BIVM-ERCC5R4GMW8 1640 aa31.06■■■□□ 2.56
PSEN1-208ENST00000553719 TOP2BQ02880 1626 aa31.04■■■□□ 2.56
PSEN1-208ENST00000553719 CUX2O14529 1486 aa31.01■■■□□ 2.56
PSEN1-208ENST00000553719 POLA1P09884 1462 aaPredicted RBP30.93■■■□□ 2.54
PSEN1-208ENST00000553719 FGD5Q6ZNL6 1462 aa30.92■■■□□ 2.54
PSEN1-208ENST00000553719 TARBP1Q13395 1621 aaKnown RBP30.8■■■□□ 2.52
PSEN1-208ENST00000553719 IFT140Q96RY7 1462 aa30.78■■■□□ 2.52
PSEN1-208ENST00000553719 RAD54L2Q9Y4B4 1467 aa30.75■■■□□ 2.51
PSEN1-208ENST00000553719 CHIC1Q5VXU3 224 aa30.74■■■□□ 2.51
PSEN1-208ENST00000553719 WDR97A6NE52 1622 aa30.73■■■□□ 2.51
PSEN1-208ENST00000553719 SOGA1O94964 1423 aa30.73■■■□□ 2.51
PSEN1-208ENST00000553719 ABCA10Q8WWZ4 1543 aa30.68■■■□□ 2.5
PSEN1-208ENST00000553719 TRIM41Q8WV44 630 aa30.65■■■□□ 2.5
PSEN1-208ENST00000553719 ZNF608Q9ULD9 1512 aaPredicted RBP30.61■■■□□ 2.49
PSEN1-208ENST00000553719 EIF4G3O43432 1585 aaKnown RBP30.55■■■□□ 2.48
PSEN1-208ENST00000553719 ABCA5Q8WWZ7 1642 aa30.54■■■□□ 2.48
PSEN1-208ENST00000553719 TDRD9Q8NDG6 1382 aaKnown RBP30.49■■■□□ 2.47
PSEN1-208ENST00000553719 AQRO60306 1485 aaKnown RBP eCLIP30.47■■■□□ 2.47
PSEN1-208ENST00000553719 GAPVD1Q14C86 1478 aa30.42■■■□□ 2.46
PSEN1-208ENST00000553719 KIF27Q86VH2 1401 aa30.39■■■□□ 2.45
PSEN1-208ENST00000553719 PBRM1Q86U86 1689 aa30.37■■■□□ 2.45
PSEN1-208ENST00000553719 RUSC2Q8N2Y8 1516 aa30.34■■■□□ 2.45
PSEN1-208ENST00000553719 GRIN2BQ13224 1484 aa30.34■■■□□ 2.45
PSEN1-208ENST00000553719 ERICH3Q5RHP9 1530 aa30.32■■■□□ 2.44
PSEN1-208ENST00000553719 SNAPC4Q5SXM2 1469 aa30.23■■■□□ 2.43
PSEN1-208ENST00000553719 MAGI1Q96QZ7 1491 aaPredicted RBP30.23■■■□□ 2.43
PSEN1-208ENST00000553719 IGF1RP08069 1367 aa30.22■■■□□ 2.43
PSEN1-208ENST00000553719 EEA1Q15075 1411 aa30.22■■■□□ 2.43
PSEN1-208ENST00000553719 ADAMTS12P58397 1594 aa30.19■■■□□ 2.42
PSEN1-208ENST00000553719 CUL7Q14999 1698 aa30.15■■■□□ 2.42
PSEN1-208ENST00000553719 FHAD1B1AJZ9 1412 aa30.1■■■□□ 2.41
PSEN1-208ENST00000553719 SYNJ2O15056 1496 aa30.1■■■□□ 2.41
PSEN1-208ENST00000553719 PRXQ9BXM0 1461 aa30.04■■■□□ 2.4
PSEN1-208ENST00000553719 CHD1O14646 1710 aa30.03■■■□□ 2.4
PSEN1-208ENST00000553719 CSRNP3Q8WYN3 585 aa30.02■■■□□ 2.4
PSEN1-208ENST00000553719 CARMIL1Q5VZK9 1371 aa30.02■■■□□ 2.4
PSEN1-208ENST00000553719 GRIN2AQ12879 1464 aa29.98■■■□□ 2.39
PSEN1-208ENST00000553719 FAM9AQ8IZU1 332 aaPredicted RBP29.96■■■□□ 2.39
PSEN1-208ENST00000553719 RAPGEF2Q9Y4G8 1499 aa29.93■■■□□ 2.38
PSEN1-208ENST00000553719 KIF21BO75037 1637 aa29.92■■■□□ 2.38
PSEN1-208ENST00000553719 CHMP7Q8WUX9 453 aaPredicted RBP29.9■■■□□ 2.38
PSEN1-208ENST00000553719 NUP160Q12769 1436 aa29.86■■■□□ 2.37
PSEN1-208ENST00000553719 FBLN2P98095 1184 aa29.84■■■□□ 2.37
PSEN1-208ENST00000553719 CEP170Q5SW79 1584 aa29.83■■■□□ 2.37
PSEN1-208ENST00000553719 CLASP1Q7Z460 1538 aa29.76■■■□□ 2.36
PSEN1-208ENST00000553719 GOLGA3Q08378 1498 aa29.73■■■□□ 2.35
PSEN1-208ENST00000553719 OSCARQ8IYS5 282 aa29.71■■■□□ 2.35
PSEN1-208ENST00000553719 CTTNBP2Q8WZ74 1663 aa29.67■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms