RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 NISCHQ9Y2I1 1504 aa35.57■■■■□ 3.29
PRPF39-204ENST00000553605 ABCC9O60706 1549 aa33.02■■■□□ 2.88
PRPF39-204ENST00000553605 CCDC180Q9P1Z9 1646 aa32.19■■■□□ 2.74
PRPF39-204ENST00000553605 DNAJC5BQ9UF47 199 aa31.71■■■□□ 2.67
PRPF39-204ENST00000553605 RB1CC1Q8TDY2 1594 aa31.06■■■□□ 2.56
PRPF39-204ENST00000553605 PABPN1Q86U42 306 aaKnown RBP eCLIP30.68■■■□□ 2.5
PRPF39-204ENST00000553605 NACADO15069 1562 aa30.66■■■□□ 2.5
PRPF39-204ENST00000553605 DCAF8L2P0C7V8 631 aa30.48■■■□□ 2.47
PRPF39-204ENST00000553605 UNC13AQ9UPW8 1703 aa30.3■■■□□ 2.44
PRPF39-204ENST00000553605 BICRAQ9NZM4 1560 aa30.17■■■□□ 2.42
PRPF39-204ENST00000553605 MYO15BQ96JP2 1530 aa29.98■■■□□ 2.39
PRPF39-204ENST00000553605 CECR2Q9BXF3 1484 aa29.82■■■□□ 2.36
PRPF39-204ENST00000553605 CC2D2AQ9P2K1 1620 aa29.75■■■□□ 2.35
PRPF39-204ENST00000553605 DNAJC5Q9H3Z4 198 aa29.68■■■□□ 2.34
PRPF39-204ENST00000553605 SHROOM4Q9ULL8 1493 aa29.68■■■□□ 2.34
PRPF39-204ENST00000553605 EIF4G1Q04637 1599 aaKnown RBP29.51■■■□□ 2.31
PRPF39-204ENST00000553605 SCRIBQ14160 1630 aa29.32■■■□□ 2.28
PRPF39-204ENST00000553605 DCAF1Q9Y4B6 1507 aa29.32■■■□□ 2.28
PRPF39-204ENST00000553605 ZCCHC6Q5VYS8 1495 aaKnown RBP29.29■■■□□ 2.28
PRPF39-204ENST00000553605 CUX2O14529 1486 aa28.75■■■□□ 2.19
PRPF39-204ENST00000553605 ERCC6Q03468 1493 aa28.56■■■□□ 2.16
PRPF39-204ENST00000553605 NCAPD3P42695 1498 aa28.35■■■□□ 2.13
PRPF39-204ENST00000553605 ATAD2BQ9ULI0 1458 aa28.15■■■□□ 2.1
PRPF39-204ENST00000553605 NESP48681 1621 aa28.14■■■□□ 2.09
PRPF39-204ENST00000553605 TRIM41Q8WV44 630 aa28.07■■■□□ 2.08
PRPF39-204ENST00000553605 HMGXB3Q12766 1538 aa28.02■■■□□ 2.08
PRPF39-204ENST00000553605 SMARCA2P51531 1590 aa28■■■□□ 2.07
PRPF39-204ENST00000553605 THOC2Q8NI27 1593 aaKnown RBP27.95■■■□□ 2.07
PRPF39-204ENST00000553605 SMARCA4P51532 1647 aa27.89■■■□□ 2.05
PRPF39-204ENST00000553605 BAZ1BQ9UIG0 1483 aaKnown RBP27.83■■■□□ 2.04
PRPF39-204ENST00000553605 LAMC3Q9Y6N6 1575 aa27.8■■■□□ 2.04
PRPF39-204ENST00000553605 PDS5BQ9NTI5 1447 aa27.71■■■□□ 2.03
PRPF39-204ENST00000553605 KIF21AQ7Z4S6 1674 aa27.69■■■□□ 2.02
PRPF39-204ENST00000553605 BAZ1AQ9NRL2 1556 aaPredicted RBP27.65■■■□□ 2.02
PRPF39-204ENST00000553605 PEG3Q9GZU2 1588 aa27.62■■■□□ 2.01
PRPF39-204ENST00000553605 MRC2Q9UBG0 1479 aa27.48■■□□□ 1.99
PRPF39-204ENST00000553605 CADPSQ9ULU8 1353 aa27.47■■□□□ 1.99
PRPF39-204ENST00000553605 WDR62O43379 1518 aa27.42■■□□□ 1.98
PRPF39-204ENST00000553605 MROH2BQ7Z745 1585 aa27.4■■□□□ 1.98
PRPF39-204ENST00000553605 OSCARQ8IYS5 282 aa27.4■■□□□ 1.98
PRPF39-204ENST00000553605 CEP164Q9UPV0 1460 aa27.22■■□□□ 1.95
PRPF39-204ENST00000553605 FANCD2Q9BXW9 1451 aa27.13■■□□□ 1.93
PRPF39-204ENST00000553605 RIMBP3CA6NJZ7 1639 aa27.03■■□□□ 1.92
PRPF39-204ENST00000553605 RIMBP3BA6NNM3 1639 aa27.03■■□□□ 1.92
PRPF39-204ENST00000553605 RIMBP3Q9UFD9 1639 aa27.03■■□□□ 1.92
PRPF39-204ENST00000553605 WIZO95785 1651 aa27.02■■□□□ 1.92
PRPF39-204ENST00000553605 CFTRP13569 1480 aa26.97■■□□□ 1.91
PRPF39-204ENST00000553605 URB2Q14146 1524 aaKnown RBP26.95■■□□□ 1.9
PRPF39-204ENST00000553605 ARHGEF11O15085 1522 aa26.88■■□□□ 1.89
PRPF39-204ENST00000553605 CYB5RLQ6IPT4 315 aa26.81■■□□□ 1.88
PRPF39-204ENST00000553605 TRHP20396 242 aaPredicted RBP26.77■■□□□ 1.88
PRPF39-204ENST00000553605 ZNF608Q9ULD9 1512 aaPredicted RBP26.75■■□□□ 1.87
PRPF39-204ENST00000553605 IFT140Q96RY7 1462 aa26.72■■□□□ 1.87
PRPF39-204ENST00000553605 TOP2AP11388 1531 aaKnown RBP26.62■■□□□ 1.85
PRPF39-204ENST00000553605 RSF1Q96T23 1441 aaPredicted RBP26.58■■□□□ 1.85
PRPF39-204ENST00000553605 ARAP1Q96P48 1450 aa26.56■■□□□ 1.84
PRPF39-204ENST00000553605 AEBP2Q6ZN18 517 aaPredicted RBP26.56■■□□□ 1.84
PRPF39-204ENST00000553605 PRDM2Q13029 1718 aa26.54■■□□□ 1.84
PRPF39-204ENST00000553605 EIF4G3O43432 1585 aaKnown RBP26.52■■□□□ 1.84
PRPF39-204ENST00000553605 TOPBP1Q92547 1522 aa26.52■■□□□ 1.84
PRPF39-204ENST00000553605 FBLN2P98095 1184 aa26.47■■□□□ 1.83
PRPF39-204ENST00000553605 CHD1O14646 1710 aa26.45■■□□□ 1.83
PRPF39-204ENST00000553605 AQRO60306 1485 aaKnown RBP eCLIP26.44■■□□□ 1.82
PRPF39-204ENST00000553605 ABCC8Q09428 1581 aa26.44■■□□□ 1.82
PRPF39-204ENST00000553605 CCDC88BA6NC98 1476 aa26.37■■□□□ 1.81
PRPF39-204ENST00000553605 DNMBPQ6XZF7 1577 aa26.34■■□□□ 1.81
PRPF39-204ENST00000553605 TARBP1Q13395 1621 aaKnown RBP26.32■■□□□ 1.8
PRPF39-204ENST00000553605 POLA1P09884 1462 aaPredicted RBP26.21■■□□□ 1.79
PRPF39-204ENST00000553605 TDRD9Q8NDG6 1382 aaKnown RBP26.17■■□□□ 1.78
PRPF39-204ENST00000553605 CLASP1Q7Z460 1538 aa26.16■■□□□ 1.78
PRPF39-204ENST00000553605 RAD54L2Q9Y4B4 1467 aa26.15■■□□□ 1.78
PRPF39-204ENST00000553605 CHMP7Q8WUX9 453 aaPredicted RBP26.14■■□□□ 1.78
PRPF39-204ENST00000553605 SOGA1O94964 1423 aa26.12■■□□□ 1.77
PRPF39-204ENST00000553605 SNAPC4Q5SXM2 1469 aa26.11■■□□□ 1.77
PRPF39-204ENST00000553605 SYNJ1O43426 1573 aa26.08■■□□□ 1.77
PRPF39-204ENST00000553605 MAGI1Q96QZ7 1491 aaPredicted RBP26.01■■□□□ 1.75
PRPF39-204ENST00000553605 WDR97A6NE52 1622 aa25.99■■□□□ 1.75
PRPF39-204ENST00000553605 GAPVD1Q14C86 1478 aa25.98■■□□□ 1.75
PRPF39-204ENST00000553605 GRIN2BQ13224 1484 aa25.95■■□□□ 1.74
PRPF39-204ENST00000553605 SYNJ2O15056 1496 aa25.94■■□□□ 1.74
PRPF39-204ENST00000553605 FGD5Q6ZNL6 1462 aa25.93■■□□□ 1.74
PRPF39-204ENST00000553605 CUX1P39880 1505 aa25.78■■□□□ 1.72
PRPF39-204ENST00000553605 PBRM1Q86U86 1689 aa25.73■■□□□ 1.71
PRPF39-204ENST00000553605 ERCC6L2Q5T890 1561 aa25.71■■□□□ 1.71
PRPF39-204ENST00000553605 GRIN2AQ12879 1464 aa25.6■■□□□ 1.69
PRPF39-204ENST00000553605 CEP170Q5SW79 1584 aa25.6■■□□□ 1.69
PRPF39-204ENST00000553605 ABCA10Q8WWZ4 1543 aa25.59■■□□□ 1.69
PRPF39-204ENST00000553605 ABCA5Q8WWZ7 1642 aa25.59■■□□□ 1.69
PRPF39-204ENST00000553605 KIF13AQ9H1H9 1805 aa25.56■■□□□ 1.68
PRPF39-204ENST00000553605 NUP160Q12769 1436 aa25.54■■□□□ 1.68
PRPF39-204ENST00000553605 SHROOM2Q13796 1616 aa25.48■■□□□ 1.67
PRPF39-204ENST00000553605 FAM69CQ0P6D2 419 aa25.46■■□□□ 1.67
PRPF39-204ENST00000553605 ILDR1Q86SU0 546 aaPredicted RBP25.46■■□□□ 1.67
PRPF39-204ENST00000553605 ADAMTS12P58397 1594 aa25.45■■□□□ 1.66
PRPF39-204ENST00000553605 KDM4FA0A1W2PPD8 638 aa25.44■■□□□ 1.66
PRPF39-204ENST00000553605 FHAD1B1AJZ9 1412 aa25.4■■□□□ 1.66
PRPF39-204ENST00000553605 PRG4Q92954 1404 aaPredicted RBP25.39■■□□□ 1.66
PRPF39-204ENST00000553605 ABCC10Q5T3U5 1492 aa25.39■■□□□ 1.65
PRPF39-204ENST00000553605 NPM1P06748 294 aaKnown RBP eCLIP25.38■■□□□ 1.65
PRPF39-204ENST00000553605 WRNQ14191 1432 aaPredicted RBP eCLIP25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms