RNA–Protein interactions for RNA: ENST00000553555.5

APEX1-205, Transcript of apurinic/apyrimidinic endodeoxyribonuclease 1, humanhuman

TSL 1 (best)

Gene APEX1, Length 1,603 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APEX1-205ENST00000553555 NISCHQ9Y2I1 1504 aa31.8■■■□□ 2.68
APEX1-205ENST00000553555 CCDC180Q9P1Z9 1646 aa27.9■■■□□ 2.06
APEX1-205ENST00000553555 ZCCHC6Q5VYS8 1495 aaKnown RBP26.64■■□□□ 1.86
APEX1-205ENST00000553555 ABCC9O60706 1549 aa26.55■■□□□ 1.84
APEX1-205ENST00000553555 DCAF1Q9Y4B6 1507 aa26.32■■□□□ 1.8
APEX1-205ENST00000553555 DCAF8L2P0C7V8 631 aa26.3■■□□□ 1.8
APEX1-205ENST00000553555 MYO15BQ96JP2 1530 aa26.12■■□□□ 1.77
APEX1-205ENST00000553555 NACADO15069 1562 aa26.03■■□□□ 1.76
APEX1-205ENST00000553555 RB1CC1Q8TDY2 1594 aa25.86■■□□□ 1.73
APEX1-205ENST00000553555 SHROOM4Q9ULL8 1493 aa25.66■■□□□ 1.7
APEX1-205ENST00000553555 SCRIBQ14160 1630 aa25.55■■□□□ 1.68
APEX1-205ENST00000553555 UNC13AQ9UPW8 1703 aa25.4■■□□□ 1.66
APEX1-205ENST00000553555 BICRAQ9NZM4 1560 aa25.09■■□□□ 1.61
APEX1-205ENST00000553555 PABPN1Q86U42 306 aaKnown RBP eCLIP24.97■■□□□ 1.59
APEX1-205ENST00000553555 CECR2Q9BXF3 1484 aa24.71■■□□□ 1.55
APEX1-205ENST00000553555 SUPT5HO00267 1087 aaKnown RBP24.58■■□□□ 1.53
APEX1-205ENST00000553555 BAZ1AQ9NRL2 1556 aaPredicted RBP24.57■■□□□ 1.52
APEX1-205ENST00000553555 MROH2BQ7Z745 1585 aa24.54■■□□□ 1.52
APEX1-205ENST00000553555 RSF1Q96T23 1441 aaPredicted RBP24.54■■□□□ 1.52
APEX1-205ENST00000553555 SMARCA4P51532 1647 aa24.51■■□□□ 1.51
APEX1-205ENST00000553555 WIZO95785 1651 aa24.35■■□□□ 1.49
APEX1-205ENST00000553555 EIF4G1Q04637 1599 aaKnown RBP24.34■■□□□ 1.49
APEX1-205ENST00000553555 PEG3Q9GZU2 1588 aa24.24■■□□□ 1.47
APEX1-205ENST00000553555 ATAD2BQ9ULI0 1458 aa24.16■■□□□ 1.46
APEX1-205ENST00000553555 SMARCA2P51531 1590 aa24.15■■□□□ 1.46
APEX1-205ENST00000553555 TOP2AP11388 1531 aaKnown RBP24.08■■□□□ 1.45
APEX1-205ENST00000553555 CC2D2AQ9P2K1 1620 aa24.06■■□□□ 1.44
APEX1-205ENST00000553555 NCAPD3P42695 1498 aa24.01■■□□□ 1.43
APEX1-205ENST00000553555 BAZ1BQ9UIG0 1483 aaKnown RBP24■■□□□ 1.43
APEX1-205ENST00000553555 HMGXB3Q12766 1538 aa23.95■■□□□ 1.42
APEX1-205ENST00000553555 CCDC88BA6NC98 1476 aa23.83■■□□□ 1.4
APEX1-205ENST00000553555 DNAJC5BQ9UF47 199 aa23.68■■□□□ 1.38
APEX1-205ENST00000553555 CHIC1Q5VXU3 224 aa23.43■■□□□ 1.34
APEX1-205ENST00000553555 CFTRP13569 1480 aa23.39■■□□□ 1.34
APEX1-205ENST00000553555 CADPSQ9ULU8 1353 aa23.36■■□□□ 1.33
APEX1-205ENST00000553555 PRDM2Q13029 1718 aa23.34■■□□□ 1.33
APEX1-205ENST00000553555 LAMC3Q9Y6N6 1575 aa23.25■■□□□ 1.31
APEX1-205ENST00000553555 NESP48681 1621 aa23.23■■□□□ 1.31
APEX1-205ENST00000553555 ABCC8Q09428 1581 aa23.22■■□□□ 1.31
APEX1-205ENST00000553555 TRIM41Q8WV44 630 aa23.15■■□□□ 1.3
APEX1-205ENST00000553555 WRNQ14191 1432 aaPredicted RBP eCLIP23.1■■□□□ 1.295e-6■■■■■ 29.2
APEX1-205ENST00000553555 FANCD2Q9BXW9 1451 aa23.09■■□□□ 1.29
APEX1-205ENST00000553555 PDS5BQ9NTI5 1447 aa23.05■■□□□ 1.28
APEX1-205ENST00000553555 SYNJ1O43426 1573 aa23.03■■□□□ 1.28
APEX1-205ENST00000553555 KIF21AQ7Z4S6 1674 aa23■■□□□ 1.27
APEX1-205ENST00000553555 TOP2BQ02880 1626 aa22.98■■□□□ 1.27
APEX1-205ENST00000553555 BIVM-ERCC5R4GMW8 1640 aa22.98■■□□□ 1.27
APEX1-205ENST00000553555 CEP164Q9UPV0 1460 aa22.97■■□□□ 1.27
APEX1-205ENST00000553555 CUX1P39880 1505 aa22.97■■□□□ 1.27
APEX1-205ENST00000553555 DNMBPQ6XZF7 1577 aa22.86■■□□□ 1.25
APEX1-205ENST00000553555 URB2Q14146 1524 aaKnown RBP22.83■■□□□ 1.25
APEX1-205ENST00000553555 TOPBP1Q92547 1522 aa22.83■■□□□ 1.25
APEX1-205ENST00000553555 ERCC6Q03468 1493 aa22.79■■□□□ 1.24
APEX1-205ENST00000553555 MRC2Q9UBG0 1479 aa22.77■■□□□ 1.24
APEX1-205ENST00000553555 FGD5Q6ZNL6 1462 aa22.75■■□□□ 1.23
APEX1-205ENST00000553555 SOGA1O94964 1423 aa22.72■■□□□ 1.23
APEX1-205ENST00000553555 FAM9AQ8IZU1 332 aaPredicted RBP22.7■■□□□ 1.22
APEX1-205ENST00000553555 POLA1P09884 1462 aaPredicted RBP22.69■■□□□ 1.22
APEX1-205ENST00000553555 THOC2Q8NI27 1593 aaKnown RBP22.68■■□□□ 1.22
APEX1-205ENST00000553555 WDR62O43379 1518 aa22.67■■□□□ 1.22
APEX1-205ENST00000553555 RUSC2Q8N2Y8 1516 aa22.66■■□□□ 1.22
APEX1-205ENST00000553555 EEA1Q15075 1411 aa22.65■■□□□ 1.22
APEX1-205ENST00000553555 RAD54L2Q9Y4B4 1467 aa22.61■■□□□ 1.21
APEX1-205ENST00000553555 ABCA10Q8WWZ4 1543 aa22.56■■□□□ 1.2
APEX1-205ENST00000553555 CSRNP3Q8WYN3 585 aa22.55■■□□□ 1.2
APEX1-205ENST00000553555 KIF27Q86VH2 1401 aa22.55■■□□□ 1.2
APEX1-205ENST00000553555 CUX2O14529 1486 aa22.54■■□□□ 1.2
APEX1-205ENST00000553555 WDR97A6NE52 1622 aa22.54■■□□□ 1.2
APEX1-205ENST00000553555 TARBP1Q13395 1621 aaKnown RBP22.53■■□□□ 1.2
APEX1-205ENST00000553555 LOC105371045A0A1W2PR82 267 aa22.5■■□□□ 1.19
APEX1-205ENST00000553555 IFT140Q96RY7 1462 aa22.46■■□□□ 1.19
APEX1-205ENST00000553555 ABCA5Q8WWZ7 1642 aa22.41■■□□□ 1.18
APEX1-205ENST00000553555 TDRD9Q8NDG6 1382 aaKnown RBP22.4■■□□□ 1.18
APEX1-205ENST00000553555 IGF1RP08069 1367 aa22.39■■□□□ 1.18
APEX1-205ENST00000553555 KIF21BO75037 1637 aa22.38■■□□□ 1.17
APEX1-205ENST00000553555 GAPVD1Q14C86 1478 aa22.36■■□□□ 1.17
APEX1-205ENST00000553555 EHMT2Q96KQ7 1210 aa22.35■■□□□ 1.17
APEX1-205ENST00000553555 PRXQ9BXM0 1461 aa22.33■■□□□ 1.17
APEX1-205ENST00000553555 ZNF608Q9ULD9 1512 aaPredicted RBP22.32■■□□□ 1.16
APEX1-205ENST00000553555 AQRO60306 1485 aaKnown RBP eCLIP22.31■■□□□ 1.163e-9■■■□□ 17.9
APEX1-205ENST00000553555 GOLGA3Q08378 1498 aa22.31■■□□□ 1.16
APEX1-205ENST00000553555 ERICH3Q5RHP9 1530 aa22.3■■□□□ 1.16
APEX1-205ENST00000553555 PBRM1Q86U86 1689 aa22.3■■□□□ 1.16
APEX1-205ENST00000553555 RAPGEF2Q9Y4G8 1499 aa22.27■■□□□ 1.16
APEX1-205ENST00000553555 CARMIL1Q5VZK9 1371 aa22.27■■□□□ 1.16
APEX1-205ENST00000553555 CUL7Q14999 1698 aa22.27■■□□□ 1.15
APEX1-205ENST00000553555 EIF4G3O43432 1585 aaKnown RBP22.26■■□□□ 1.15
APEX1-205ENST00000553555 GRIN2BQ13224 1484 aa22.23■■□□□ 1.15
APEX1-205ENST00000553555 UBTFP17480 764 aaKnown RBP22.21■■□□□ 1.15
APEX1-205ENST00000553555 TNIKQ9UKE5 1360 aa22.2■■□□□ 1.14
APEX1-205ENST00000553555 ADAMTS12P58397 1594 aa22.12■■□□□ 1.13
APEX1-205ENST00000553555 FHAD1B1AJZ9 1412 aa22.11■■□□□ 1.13
APEX1-205ENST00000553555 SNAPC4Q5SXM2 1469 aa22.1■■□□□ 1.13
APEX1-205ENST00000553555 MAGI1Q96QZ7 1491 aaPredicted RBP22.08■■□□□ 1.12
APEX1-205ENST00000553555 CEP162Q5TB80 1403 aa22.03■■□□□ 1.12
APEX1-205ENST00000553555 CTTNBP2Q8WZ74 1663 aa22■■□□□ 1.11
APEX1-205ENST00000553555 SYNJ2O15056 1496 aa21.99■■□□□ 1.11
APEX1-205ENST00000553555 GRIN2AQ12879 1464 aa21.95■■□□□ 1.11
APEX1-205ENST00000553555 CHMP7Q8WUX9 453 aaPredicted RBP21.95■■□□□ 1.1
APEX1-205ENST00000553555 CLIP1P30622 1438 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms