RNA–Protein interactions for RNA: ENST00000553527.1

TDP1-205, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 910 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-205ENST00000553527 NISCHQ9Y2I1 1504 aa57.52■■■■■ 6.8
TDP1-205ENST00000553527 CCDC180Q9P1Z9 1646 aa51.2■■■■■ 5.79
TDP1-205ENST00000553527 ABCC9O60706 1549 aa50.56■■■■■ 5.68
TDP1-205ENST00000553527 DCAF8L2P0C7V8 631 aa48.51■■■■■ 5.36
TDP1-205ENST00000553527 RB1CC1Q8TDY2 1594 aa48.39■■■■■ 5.34
TDP1-205ENST00000553527 NACADO15069 1562 aa48.23■■■■■ 5.31
TDP1-205ENST00000553527 ZCCHC6Q5VYS8 1495 aaKnown RBP47.8■■■■■ 5.24
TDP1-205ENST00000553527 MYO15BQ96JP2 1530 aa47.72■■■■■ 5.23
TDP1-205ENST00000553527 DCAF1Q9Y4B6 1507 aa47.45■■■■■ 5.19
TDP1-205ENST00000553527 UNC13AQ9UPW8 1703 aa47.4■■■■■ 5.18
TDP1-205ENST00000553527 PABPN1Q86U42 306 aaKnown RBP eCLIP47.28■■■■■ 5.16
TDP1-205ENST00000553527 BICRAQ9NZM4 1560 aa46.94■■■■■ 5.1
TDP1-205ENST00000553527 SCRIBQ14160 1630 aa46.87■■■■■ 5.09
TDP1-205ENST00000553527 DNAJC5BQ9UF47 199 aa46.69■■■■■ 5.06
TDP1-205ENST00000553527 SHROOM4Q9ULL8 1493 aa46.23■■■■■ 4.99
TDP1-205ENST00000553527 EIF4G1Q04637 1599 aaKnown RBP45.74■■■■■ 4.91
TDP1-205ENST00000553527 CC2D2AQ9P2K1 1620 aa45.66■■■■■ 4.9
TDP1-205ENST00000553527 CECR2Q9BXF3 1484 aa45.4■■■■■ 4.86
TDP1-205ENST00000553527 SMARCA4P51532 1647 aa44.72■■■■■ 4.75
TDP1-205ENST00000553527 BAZ1AQ9NRL2 1556 aaPredicted RBP44.59■■■■■ 4.73
TDP1-205ENST00000553527 ATAD2BQ9ULI0 1458 aa44.53■■■■■ 4.72
TDP1-205ENST00000553527 NCAPD3P42695 1498 aa44.5■■■■■ 4.71
TDP1-205ENST00000553527 SMARCA2P51531 1590 aa44.43■■■■■ 4.7
TDP1-205ENST00000553527 MROH2BQ7Z745 1585 aa44.38■■■■■ 4.69
TDP1-205ENST00000553527 HMGXB3Q12766 1538 aa44.22■■■■■ 4.67
TDP1-205ENST00000553527 BAZ1BQ9UIG0 1483 aaKnown RBP44.18■■■■■ 4.66
TDP1-205ENST00000553527 PEG3Q9GZU2 1588 aa44.17■■■■■ 4.66
TDP1-205ENST00000553527 WIZO95785 1651 aa43.95■■■■■ 4.63
TDP1-205ENST00000553527 RSF1Q96T23 1441 aaPredicted RBP43.75■■■■■ 4.59
TDP1-205ENST00000553527 NESP48681 1621 aa43.66■■■■■ 4.58
TDP1-205ENST00000553527 ERCC6Q03468 1493 aa43.59■■■■■ 4.57
TDP1-205ENST00000553527 LAMC3Q9Y6N6 1575 aa43.4■■■■■ 4.54
TDP1-205ENST00000553527 TOP2AP11388 1531 aaKnown RBP43.34■■■■■ 4.53
TDP1-205ENST00000553527 CADPSQ9ULU8 1353 aa43.25■■■■■ 4.51
TDP1-205ENST00000553527 PDS5BQ9NTI5 1447 aa43.14■■■■■ 4.5
TDP1-205ENST00000553527 KIF21AQ7Z4S6 1674 aa43.14■■■■■ 4.5
TDP1-205ENST00000553527 CUX2O14529 1486 aa43.09■■■■■ 4.49
TDP1-205ENST00000553527 THOC2Q8NI27 1593 aaKnown RBP42.95■■■■■ 4.47
TDP1-205ENST00000553527 CCDC88BA6NC98 1476 aa42.91■■■■■ 4.46
TDP1-205ENST00000553527 CFTRP13569 1480 aa42.89■■■■■ 4.46
TDP1-205ENST00000553527 FANCD2Q9BXW9 1451 aa42.77■■■■■ 4.44
TDP1-205ENST00000553527 CEP164Q9UPV0 1460 aa42.74■■■■■ 4.43
TDP1-205ENST00000553527 MRC2Q9UBG0 1479 aa42.71■■■■■ 4.43
TDP1-205ENST00000553527 SUPT5HO00267 1087 aaKnown RBP42.67■■■■■ 4.42
TDP1-205ENST00000553527 PRDM2Q13029 1718 aa42.6■■■■■ 4.41
TDP1-205ENST00000553527 WDR62O43379 1518 aa42.54■■■■■ 4.4
TDP1-205ENST00000553527 URB2Q14146 1524 aaKnown RBP42.36■■■■■ 4.37
TDP1-205ENST00000553527 DNAJC5Q9H3Z4 198 aa42.21■■■■■ 4.35
TDP1-205ENST00000553527 TOPBP1Q92547 1522 aa42.05■■■■■ 4.32
TDP1-205ENST00000553527 ABCC8Q09428 1581 aa41.97■■■■■ 4.31
TDP1-205ENST00000553527 DNMBPQ6XZF7 1577 aa41.95■■■■■ 4.31
TDP1-205ENST00000553527 IFT140Q96RY7 1462 aa41.82■■■■■ 4.29
TDP1-205ENST00000553527 ZNF608Q9ULD9 1512 aaPredicted RBP41.74■■■■■ 4.27
TDP1-205ENST00000553527 POLA1P09884 1462 aaPredicted RBP41.66■■■■■ 4.26
TDP1-205ENST00000553527 CUX1P39880 1505 aa41.64■■■■■ 4.26
TDP1-205ENST00000553527 TARBP1Q13395 1621 aaKnown RBP41.59■■■■■ 4.25
TDP1-205ENST00000553527 RAD54L2Q9Y4B4 1467 aa41.57■■■■■ 4.25
TDP1-205ENST00000553527 FGD5Q6ZNL6 1462 aa41.55■■■■■ 4.24
TDP1-205ENST00000553527 SOGA1O94964 1423 aa41.55■■■■■ 4.24
TDP1-205ENST00000553527 EIF4G3O43432 1585 aaKnown RBP41.51■■■■■ 4.24
TDP1-205ENST00000553527 AQRO60306 1485 aaKnown RBP eCLIP41.49■■■■■ 4.23
TDP1-205ENST00000553527 OSCARQ8IYS5 282 aa41.41■■■■■ 4.22
TDP1-205ENST00000553527 TDRD9Q8NDG6 1382 aaKnown RBP41.39■■■■■ 4.22
TDP1-205ENST00000553527 WRNQ14191 1432 aaPredicted RBP eCLIP41.27■■■■■ 4.2
TDP1-205ENST00000553527 SYNJ1O43426 1573 aa41.2■■■■■ 4.19
TDP1-205ENST00000553527 FBLN2P98095 1184 aa41.19■■■■■ 4.18
TDP1-205ENST00000553527 TOP2BQ02880 1626 aa41.18■■■■■ 4.18
TDP1-205ENST00000553527 WDR97A6NE52 1622 aa41.17■■■■■ 4.18
TDP1-205ENST00000553527 BIVM-ERCC5R4GMW8 1640 aa41.17■■■■■ 4.18
TDP1-205ENST00000553527 CHD1O14646 1710 aa41.12■■■■■ 4.17
TDP1-205ENST00000553527 ABCA10Q8WWZ4 1543 aa41.07■■■■■ 4.16
TDP1-205ENST00000553527 SNAPC4Q5SXM2 1469 aa41.05■■■■■ 4.16
TDP1-205ENST00000553527 GAPVD1Q14C86 1478 aa41.04■■■■■ 4.16
TDP1-205ENST00000553527 GRIN2BQ13224 1484 aa41.03■■■■■ 4.16
TDP1-205ENST00000553527 PBRM1Q86U86 1689 aa41■■■■■ 4.15
TDP1-205ENST00000553527 CHMP7Q8WUX9 453 aaPredicted RBP40.94■■■■■ 4.14
TDP1-205ENST00000553527 ABCA5Q8WWZ7 1642 aa40.93■■■■■ 4.14
TDP1-205ENST00000553527 MAGI1Q96QZ7 1491 aaPredicted RBP40.91■■■■■ 4.14
TDP1-205ENST00000553527 TRIM41Q8WV44 630 aa40.88■■■■■ 4.13
TDP1-205ENST00000553527 SYNJ2O15056 1496 aa40.79■■■■■ 4.12
TDP1-205ENST00000553527 RIMBP3CA6NJZ7 1639 aa40.73■■■■■ 4.11
TDP1-205ENST00000553527 RIMBP3BA6NNM3 1639 aa40.73■■■■■ 4.11
TDP1-205ENST00000553527 RIMBP3Q9UFD9 1639 aa40.73■■■■■ 4.11
TDP1-205ENST00000553527 ARHGEF11O15085 1522 aa40.66■■■■■ 4.1
TDP1-205ENST00000553527 ADAMTS12P58397 1594 aa40.57■■■■■ 4.09
TDP1-205ENST00000553527 ERICH3Q5RHP9 1530 aa40.57■■■■■ 4.08
TDP1-205ENST00000553527 CLASP1Q7Z460 1538 aa40.54■■■■■ 4.08
TDP1-205ENST00000553527 FHAD1B1AJZ9 1412 aa40.51■■■■■ 4.08
TDP1-205ENST00000553527 GRIN2AQ12879 1464 aa40.51■■■■■ 4.07
TDP1-205ENST00000553527 CYB5RLQ6IPT4 315 aa40.46■■■■■ 4.07
TDP1-205ENST00000553527 KIF27Q86VH2 1401 aa40.43■■■■■ 4.06
TDP1-205ENST00000553527 CEP170Q5SW79 1584 aa40.34■■■■■ 4.05
TDP1-205ENST00000553527 IGF1RP08069 1367 aa40.31■■■■■ 4.04
TDP1-205ENST00000553527 ARAP1Q96P48 1450 aa40.31■■■■■ 4.04
TDP1-205ENST00000553527 NUP160Q12769 1436 aa40.29■■■■■ 4.04
TDP1-205ENST00000553527 CUL7Q14999 1698 aa40.17■■■■■ 4.02
TDP1-205ENST00000553527 CARMIL1Q5VZK9 1371 aa40.1■■■■■ 4.01
TDP1-205ENST00000553527 RUSC2Q8N2Y8 1516 aa40.08■■■■■ 4.01
TDP1-205ENST00000553527 ERCC6L2Q5T890 1561 aa40.08■■■■■ 4.01
TDP1-205ENST00000553527 SHROOM2Q13796 1616 aa40.02■■■■■ 4
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms