RNA–Protein interactions for RNA: ENST00000553427.5

CPSF2-202, Transcript of cleavage and polyadenylation specific factor 2, humanhuman

TSL 4

Gene CPSF2, Length 715 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF2-202ENST00000553427 NISCHQ9Y2I1 1504 aa44.97■■■■■ 4.79
CPSF2-202ENST00000553427 CCDC180Q9P1Z9 1646 aa40.02■■■■■ 4
CPSF2-202ENST00000553427 ABCC9O60706 1549 aa38.99■■■■□ 3.83
CPSF2-202ENST00000553427 NACADO15069 1562 aa37.61■■■■□ 3.61
CPSF2-202ENST00000553427 RB1CC1Q8TDY2 1594 aa37.61■■■■□ 3.61
CPSF2-202ENST00000553427 ZCCHC6Q5VYS8 1495 aaKnown RBP37.5■■■■□ 3.59
CPSF2-202ENST00000553427 MYO15BQ96JP2 1530 aa37.48■■■■□ 3.59
CPSF2-202ENST00000553427 DCAF8L2P0C7V8 631 aa37.33■■■■□ 3.57
CPSF2-202ENST00000553427 DCAF1Q9Y4B6 1507 aa37.31■■■■□ 3.56
CPSF2-202ENST00000553427 UNC13AQ9UPW8 1703 aa36.69■■■■□ 3.46
CPSF2-202ENST00000553427 BICRAQ9NZM4 1560 aa36.47■■■■□ 3.43
CPSF2-202ENST00000553427 SCRIBQ14160 1630 aa36.4■■■■□ 3.42
CPSF2-202ENST00000553427 PABPN1Q86U42 306 aaKnown RBP eCLIP36.38■■■■□ 3.41
CPSF2-202ENST00000553427 SHROOM4Q9ULL8 1493 aa36.23■■■■□ 3.39
CPSF2-202ENST00000553427 DNAJC5BQ9UF47 199 aa35.74■■■■□ 3.31
CPSF2-202ENST00000553427 EIF4G1Q04637 1599 aaKnown RBP35.5■■■■□ 3.27
CPSF2-202ENST00000553427 CC2D2AQ9P2K1 1620 aa35.32■■■■□ 3.24
CPSF2-202ENST00000553427 CECR2Q9BXF3 1484 aa35.08■■■■□ 3.21
CPSF2-202ENST00000553427 SMARCA4P51532 1647 aa34.88■■■■□ 3.17
CPSF2-202ENST00000553427 BAZ1AQ9NRL2 1556 aaPredicted RBP34.87■■■■□ 3.17
CPSF2-202ENST00000553427 NCAPD3P42695 1498 aa34.7■■■■□ 3.15
CPSF2-202ENST00000553427 ATAD2BQ9ULI0 1458 aa34.69■■■■□ 3.14
CPSF2-202ENST00000553427 SMARCA2P51531 1590 aa34.68■■■■□ 3.14
CPSF2-202ENST00000553427 MROH2BQ7Z745 1585 aa34.62■■■■□ 3.13
CPSF2-202ENST00000553427 PEG3Q9GZU2 1588 aa34.62■■■■□ 3.13
CPSF2-202ENST00000553427 HMGXB3Q12766 1538 aa34.55■■■■□ 3.12
CPSF2-202ENST00000553427 BAZ1BQ9UIG0 1483 aaKnown RBP34.39■■■■□ 3.1
CPSF2-202ENST00000553427 RSF1Q96T23 1441 aaPredicted RBP34.25■■■■□ 3.07
CPSF2-202ENST00000553427 WIZO95785 1651 aa34.2■■■■□ 3.07
CPSF2-202ENST00000553427 TOP2AP11388 1531 aaKnown RBP33.94■■■■□ 3.02
CPSF2-202ENST00000553427 LAMC3Q9Y6N6 1575 aa33.77■■■■□ 3
CPSF2-202ENST00000553427 NESP48681 1621 aa33.75■■■□□ 2.99
CPSF2-202ENST00000553427 CADPSQ9ULU8 1353 aa33.65■■■□□ 2.98
CPSF2-202ENST00000553427 ERCC6Q03468 1493 aa33.63■■■□□ 2.97
CPSF2-202ENST00000553427 PDS5BQ9NTI5 1447 aa33.53■■■□□ 2.96
CPSF2-202ENST00000553427 CCDC88BA6NC98 1476 aa33.49■■■□□ 2.95
CPSF2-202ENST00000553427 CFTRP13569 1480 aa33.49■■■□□ 2.95
CPSF2-202ENST00000553427 KIF21AQ7Z4S6 1674 aa33.36■■■□□ 2.93
CPSF2-202ENST00000553427 CUX2O14529 1486 aa33.36■■■□□ 2.93
CPSF2-202ENST00000553427 THOC2Q8NI27 1593 aaKnown RBP33.32■■■□□ 2.92
CPSF2-202ENST00000553427 FANCD2Q9BXW9 1451 aa33.25■■■□□ 2.91
CPSF2-202ENST00000553427 SUPT5HO00267 1087 aaKnown RBP33.23■■■□□ 2.91
CPSF2-202ENST00000553427 CEP164Q9UPV0 1460 aa33.22■■■□□ 2.91
CPSF2-202ENST00000553427 PRDM2Q13029 1718 aa33.2■■■□□ 2.91
CPSF2-202ENST00000553427 MRC2Q9UBG0 1479 aa33.18■■■□□ 2.9
CPSF2-202ENST00000553427 WDR62O43379 1518 aa33.1■■■□□ 2.89
CPSF2-202ENST00000553427 URB2Q14146 1524 aaKnown RBP32.92■■■□□ 2.86
CPSF2-202ENST00000553427 ABCC8Q09428 1581 aa32.78■■■□□ 2.84
CPSF2-202ENST00000553427 TOPBP1Q92547 1522 aa32.73■■■□□ 2.83
CPSF2-202ENST00000553427 DNMBPQ6XZF7 1577 aa32.72■■■□□ 2.83
CPSF2-202ENST00000553427 IFT140Q96RY7 1462 aa32.54■■■□□ 2.8
CPSF2-202ENST00000553427 CUX1P39880 1505 aa32.49■■■□□ 2.79
CPSF2-202ENST00000553427 POLA1P09884 1462 aaPredicted RBP32.46■■■□□ 2.79
CPSF2-202ENST00000553427 TARBP1Q13395 1621 aaKnown RBP32.39■■■□□ 2.78
CPSF2-202ENST00000553427 FGD5Q6ZNL6 1462 aa32.36■■■□□ 2.77
CPSF2-202ENST00000553427 ZNF608Q9ULD9 1512 aaPredicted RBP32.33■■■□□ 2.77
CPSF2-202ENST00000553427 SOGA1O94964 1423 aa32.29■■■□□ 2.76
CPSF2-202ENST00000553427 WRNQ14191 1432 aaPredicted RBP eCLIP32.29■■■□□ 2.76
CPSF2-202ENST00000553427 RAD54L2Q9Y4B4 1467 aa32.26■■■□□ 2.75
CPSF2-202ENST00000553427 EIF4G3O43432 1585 aaKnown RBP32.24■■■□□ 2.75
CPSF2-202ENST00000553427 TOP2BQ02880 1626 aa32.24■■■□□ 2.75
CPSF2-202ENST00000553427 BIVM-ERCC5R4GMW8 1640 aa32.23■■■□□ 2.75
CPSF2-202ENST00000553427 DNAJC5Q9H3Z4 198 aa32.23■■■□□ 2.75
CPSF2-202ENST00000553427 WDR97A6NE52 1622 aa32.22■■■□□ 2.75
CPSF2-202ENST00000553427 SYNJ1O43426 1573 aa32.19■■■□□ 2.74
CPSF2-202ENST00000553427 AQRO60306 1485 aaKnown RBP eCLIP32.14■■■□□ 2.74
CPSF2-202ENST00000553427 ABCA10Q8WWZ4 1543 aa32.1■■■□□ 2.73
CPSF2-202ENST00000553427 TDRD9Q8NDG6 1382 aaKnown RBP32.07■■■□□ 2.73
CPSF2-202ENST00000553427 ABCA5Q8WWZ7 1642 aa31.97■■■□□ 2.71
CPSF2-202ENST00000553427 GRIN2BQ13224 1484 aa31.96■■■□□ 2.71
CPSF2-202ENST00000553427 GAPVD1Q14C86 1478 aa31.94■■■□□ 2.7
CPSF2-202ENST00000553427 MAGI1Q96QZ7 1491 aaPredicted RBP31.91■■■□□ 2.7
CPSF2-202ENST00000553427 OSCARQ8IYS5 282 aa31.88■■■□□ 2.69
CPSF2-202ENST00000553427 SNAPC4Q5SXM2 1469 aa31.88■■■□□ 2.69
CPSF2-202ENST00000553427 PBRM1Q86U86 1689 aa31.85■■■□□ 2.69
CPSF2-202ENST00000553427 CHD1O14646 1710 aa31.78■■■□□ 2.68
CPSF2-202ENST00000553427 SYNJ2O15056 1496 aa31.75■■■□□ 2.67
CPSF2-202ENST00000553427 ERICH3Q5RHP9 1530 aa31.73■■■□□ 2.67
CPSF2-202ENST00000553427 ADAMTS12P58397 1594 aa31.66■■■□□ 2.66
CPSF2-202ENST00000553427 FBLN2P98095 1184 aa31.66■■■□□ 2.66
CPSF2-202ENST00000553427 CHMP7Q8WUX9 453 aaPredicted RBP31.65■■■□□ 2.66
CPSF2-202ENST00000553427 KIF27Q86VH2 1401 aa31.62■■■□□ 2.65
CPSF2-202ENST00000553427 FHAD1B1AJZ9 1412 aa31.6■■■□□ 2.65
CPSF2-202ENST00000553427 GRIN2AQ12879 1464 aa31.54■■■□□ 2.64
CPSF2-202ENST00000553427 CLASP1Q7Z460 1538 aa31.53■■■□□ 2.64
CPSF2-202ENST00000553427 IGF1RP08069 1367 aa31.47■■■□□ 2.63
CPSF2-202ENST00000553427 TRIM41Q8WV44 630 aa31.45■■■□□ 2.63
CPSF2-202ENST00000553427 NUP160Q12769 1436 aa31.44■■■□□ 2.62
CPSF2-202ENST00000553427 CUL7Q14999 1698 aa31.43■■■□□ 2.62
CPSF2-202ENST00000553427 ARHGEF11O15085 1522 aa31.41■■■□□ 2.62
CPSF2-202ENST00000553427 RIMBP3CA6NJZ7 1639 aa31.38■■■□□ 2.61
CPSF2-202ENST00000553427 RIMBP3BA6NNM3 1639 aa31.38■■■□□ 2.61
CPSF2-202ENST00000553427 RIMBP3Q9UFD9 1639 aa31.38■■■□□ 2.61
CPSF2-202ENST00000553427 CEP170Q5SW79 1584 aa31.37■■■□□ 2.61
CPSF2-202ENST00000553427 CARMIL1Q5VZK9 1371 aa31.28■■■□□ 2.6
CPSF2-202ENST00000553427 RUSC2Q8N2Y8 1516 aa31.25■■■□□ 2.59
CPSF2-202ENST00000553427 SHROOM2Q13796 1616 aa31.19■■■□□ 2.58
CPSF2-202ENST00000553427 ARAP1Q96P48 1450 aa31.17■■■□□ 2.58
CPSF2-202ENST00000553427 RAPGEF2Q9Y4G8 1499 aa31.12■■■□□ 2.57
CPSF2-202ENST00000553427 KIAA0586Q9BVV6 1533 aa31.12■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms