RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 NISCHQ9Y2I1 1504 aa31.52■■■□□ 2.64
LINC00643-202ENST00000553426 ABCC9O60706 1549 aa28.23■■■□□ 2.11
LINC00643-202ENST00000553426 CCDC180Q9P1Z9 1646 aa28.21■■■□□ 2.11
LINC00643-202ENST00000553426 DNAJC5BQ9UF47 199 aa26.97■■□□□ 1.91
LINC00643-202ENST00000553426 RB1CC1Q8TDY2 1594 aa26.84■■□□□ 1.89
LINC00643-202ENST00000553426 NACADO15069 1562 aa26.68■■□□□ 1.86
LINC00643-202ENST00000553426 DCAF8L2P0C7V8 631 aa26.68■■□□□ 1.86
LINC00643-202ENST00000553426 MYO15BQ96JP2 1530 aa26.35■■□□□ 1.81
LINC00643-202ENST00000553426 PABPN1Q86U42 306 aaKnown RBP eCLIP26.23■■□□□ 1.79
LINC00643-202ENST00000553426 ZCCHC6Q5VYS8 1495 aaKnown RBP26.14■■□□□ 1.78
LINC00643-202ENST00000553426 UNC13AQ9UPW8 1703 aa26.11■■□□□ 1.77
LINC00643-202ENST00000553426 DCAF1Q9Y4B6 1507 aa26.05■■□□□ 1.76
LINC00643-202ENST00000553426 BICRAQ9NZM4 1560 aa25.95■■□□□ 1.75
LINC00643-202ENST00000553426 SHROOM4Q9ULL8 1493 aa25.72■■□□□ 1.71
LINC00643-202ENST00000553426 SCRIBQ14160 1630 aa25.72■■□□□ 1.71
LINC00643-202ENST00000553426 CC2D2AQ9P2K1 1620 aa25.47■■□□□ 1.67
LINC00643-202ENST00000553426 CECR2Q9BXF3 1484 aa25.43■■□□□ 1.66
LINC00643-202ENST00000553426 EIF4G1Q04637 1599 aaKnown RBP25.36■■□□□ 1.65
LINC00643-202ENST00000553426 DNAJC5Q9H3Z4 198 aa24.99■■□□□ 1.59
LINC00643-202ENST00000553426 NCAPD3P42695 1498 aa24.63■■□□□ 1.53
LINC00643-202ENST00000553426 ATAD2BQ9ULI0 1458 aa24.56■■□□□ 1.52
LINC00643-202ENST00000553426 SMARCA4P51532 1647 aa24.55■■□□□ 1.52
LINC00643-202ENST00000553426 SMARCA2P51531 1590 aa24.54■■□□□ 1.52
LINC00643-202ENST00000553426 BAZ1AQ9NRL2 1556 aaPredicted RBP24.49■■□□□ 1.51
LINC00643-202ENST00000553426 HMGXB3Q12766 1538 aa24.45■■□□□ 1.5
LINC00643-202ENST00000553426 CUX2O14529 1486 aa24.43■■□□□ 1.5
LINC00643-202ENST00000553426 BAZ1BQ9UIG0 1483 aaKnown RBP24.37■■□□□ 1.49
LINC00643-202ENST00000553426 ERCC6Q03468 1493 aa24.32■■□□□ 1.48
LINC00643-202ENST00000553426 PEG3Q9GZU2 1588 aa24.3■■□□□ 1.48
LINC00643-202ENST00000553426 MROH2BQ7Z745 1585 aa24.26■■□□□ 1.47
LINC00643-202ENST00000553426 NESP48681 1621 aa24.16■■□□□ 1.46
LINC00643-202ENST00000553426 LAMC3Q9Y6N6 1575 aa24.05■■□□□ 1.44
LINC00643-202ENST00000553426 THOC2Q8NI27 1593 aaKnown RBP23.97■■□□□ 1.43
LINC00643-202ENST00000553426 PDS5BQ9NTI5 1447 aa23.97■■□□□ 1.43
LINC00643-202ENST00000553426 WIZO95785 1651 aa23.96■■□□□ 1.43
LINC00643-202ENST00000553426 CADPSQ9ULU8 1353 aa23.91■■□□□ 1.42
LINC00643-202ENST00000553426 RSF1Q96T23 1441 aaPredicted RBP23.84■■□□□ 1.41
LINC00643-202ENST00000553426 KIF21AQ7Z4S6 1674 aa23.83■■□□□ 1.4
LINC00643-202ENST00000553426 TRIM41Q8WV44 630 aa23.72■■□□□ 1.39
LINC00643-202ENST00000553426 TOP2AP11388 1531 aaKnown RBP23.71■■□□□ 1.39
LINC00643-202ENST00000553426 MRC2Q9UBG0 1479 aa23.7■■□□□ 1.38
LINC00643-202ENST00000553426 CEP164Q9UPV0 1460 aa23.65■■□□□ 1.38
LINC00643-202ENST00000553426 CFTRP13569 1480 aa23.64■■□□□ 1.38
LINC00643-202ENST00000553426 FANCD2Q9BXW9 1451 aa23.62■■□□□ 1.37
LINC00643-202ENST00000553426 WDR62O43379 1518 aa23.61■■□□□ 1.37
LINC00643-202ENST00000553426 CCDC88BA6NC98 1476 aa23.45■■□□□ 1.34
LINC00643-202ENST00000553426 URB2Q14146 1524 aaKnown RBP23.37■■□□□ 1.33
LINC00643-202ENST00000553426 PRDM2Q13029 1718 aa23.36■■□□□ 1.33
LINC00643-202ENST00000553426 OSCARQ8IYS5 282 aa23.25■■□□□ 1.31
LINC00643-202ENST00000553426 ABCC8Q09428 1581 aa23.2■■□□□ 1.3
LINC00643-202ENST00000553426 IFT140Q96RY7 1462 aa23.17■■□□□ 1.3
LINC00643-202ENST00000553426 TOPBP1Q92547 1522 aa23.17■■□□□ 1.3
LINC00643-202ENST00000553426 DNMBPQ6XZF7 1577 aa23.1■■□□□ 1.29
LINC00643-202ENST00000553426 RIMBP3CA6NJZ7 1639 aa23.07■■□□□ 1.28
LINC00643-202ENST00000553426 RIMBP3BA6NNM3 1639 aa23.07■■□□□ 1.28
LINC00643-202ENST00000553426 RIMBP3Q9UFD9 1639 aa23.07■■□□□ 1.28
LINC00643-202ENST00000553426 ZNF608Q9ULD9 1512 aaPredicted RBP23.06■■□□□ 1.28
LINC00643-202ENST00000553426 SUPT5HO00267 1087 aaKnown RBP22.97■■□□□ 1.27
LINC00643-202ENST00000553426 EIF4G3O43432 1585 aaKnown RBP22.94■■□□□ 1.26
LINC00643-202ENST00000553426 POLA1P09884 1462 aaPredicted RBP22.94■■□□□ 1.26
LINC00643-202ENST00000553426 ARHGEF11O15085 1522 aa22.92■■□□□ 1.26
LINC00643-202ENST00000553426 TARBP1Q13395 1621 aaKnown RBP22.92■■□□□ 1.26
LINC00643-202ENST00000553426 AQRO60306 1485 aaKnown RBP eCLIP22.91■■□□□ 1.26
LINC00643-202ENST00000553426 SOGA1O94964 1423 aa22.89■■□□□ 1.25
LINC00643-202ENST00000553426 RAD54L2Q9Y4B4 1467 aa22.85■■□□□ 1.25
LINC00643-202ENST00000553426 FGD5Q6ZNL6 1462 aa22.82■■□□□ 1.24
LINC00643-202ENST00000553426 FBLN2P98095 1184 aa22.82■■□□□ 1.24
LINC00643-202ENST00000553426 TDRD9Q8NDG6 1382 aaKnown RBP22.8■■□□□ 1.24
LINC00643-202ENST00000553426 CUX1P39880 1505 aa22.79■■□□□ 1.24
LINC00643-202ENST00000553426 CYB5RLQ6IPT4 315 aa22.78■■□□□ 1.24
LINC00643-202ENST00000553426 WDR97A6NE52 1622 aa22.75■■□□□ 1.23
LINC00643-202ENST00000553426 CHD1O14646 1710 aa22.74■■□□□ 1.23
LINC00643-202ENST00000553426 ARAP1Q96P48 1450 aa22.69■■□□□ 1.22
LINC00643-202ENST00000553426 CHMP7Q8WUX9 453 aaPredicted RBP22.68■■□□□ 1.22
LINC00643-202ENST00000553426 SNAPC4Q5SXM2 1469 aa22.67■■□□□ 1.22
LINC00643-202ENST00000553426 GRIN2BQ13224 1484 aa22.66■■□□□ 1.22
LINC00643-202ENST00000553426 MAGI1Q96QZ7 1491 aaPredicted RBP22.65■■□□□ 1.22
LINC00643-202ENST00000553426 TRHP20396 242 aaPredicted RBP22.64■■□□□ 1.21
LINC00643-202ENST00000553426 GAPVD1Q14C86 1478 aa22.6■■□□□ 1.21
LINC00643-202ENST00000553426 ABCA10Q8WWZ4 1543 aa22.58■■□□□ 1.21
LINC00643-202ENST00000553426 WRNQ14191 1432 aaPredicted RBP eCLIP22.57■■□□□ 1.2
LINC00643-202ENST00000553426 SYNJ2O15056 1496 aa22.56■■□□□ 1.2
LINC00643-202ENST00000553426 SYNJ1O43426 1573 aa22.55■■□□□ 1.2
LINC00643-202ENST00000553426 PBRM1Q86U86 1689 aa22.52■■□□□ 1.2
LINC00643-202ENST00000553426 ABCA5Q8WWZ7 1642 aa22.49■■□□□ 1.19
LINC00643-202ENST00000553426 CLASP1Q7Z460 1538 aa22.48■■□□□ 1.19
LINC00643-202ENST00000553426 TOP2BQ02880 1626 aa22.48■■□□□ 1.19
LINC00643-202ENST00000553426 BIVM-ERCC5R4GMW8 1640 aa22.46■■□□□ 1.19
LINC00643-202ENST00000553426 GRIN2AQ12879 1464 aa22.35■■□□□ 1.17
LINC00643-202ENST00000553426 FHAD1B1AJZ9 1412 aa22.32■■□□□ 1.16
LINC00643-202ENST00000553426 ADAMTS12P58397 1594 aa22.32■■□□□ 1.16
LINC00643-202ENST00000553426 ERICH3Q5RHP9 1530 aa22.31■■□□□ 1.16
LINC00643-202ENST00000553426 AEBP2Q6ZN18 517 aaPredicted RBP22.27■■□□□ 1.16
LINC00643-202ENST00000553426 NUP160Q12769 1436 aa22.26■■□□□ 1.15
LINC00643-202ENST00000553426 CEP170Q5SW79 1584 aa22.21■■□□□ 1.15
LINC00643-202ENST00000553426 KIF27Q86VH2 1401 aa22.13■■□□□ 1.13
LINC00643-202ENST00000553426 ERCC6L2Q5T890 1561 aa22.12■■□□□ 1.13
LINC00643-202ENST00000553426 SHROOM2Q13796 1616 aa22.11■■□□□ 1.13
LINC00643-202ENST00000553426 JPH4Q96JJ6 628 aa22.09■■□□□ 1.13
LINC00643-202ENST00000553426 PRG4Q92954 1404 aaPredicted RBP22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms