RNA–Protein interactions for RNA: ENST00000553368.1

APEX1-204, Transcript of apurinic/apyrimidinic endodeoxyribonuclease 1, humanhuman

TSL 3

Gene APEX1, Length 304 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APEX1-204ENST00000553368 NISCHQ9Y2I1 1504 aa38■■■■□ 3.67
APEX1-204ENST00000553368 ABCC9O60706 1549 aa34.17■■■■□ 3.06
APEX1-204ENST00000553368 CCDC180Q9P1Z9 1646 aa34.12■■■■□ 3.05
APEX1-204ENST00000553368 RB1CC1Q8TDY2 1594 aa32.51■■■□□ 2.79
APEX1-204ENST00000553368 NACADO15069 1562 aa32.29■■■□□ 2.76
APEX1-204ENST00000553368 DNAJC5BQ9UF47 199 aa32.2■■■□□ 2.75
APEX1-204ENST00000553368 DCAF8L2P0C7V8 631 aa32.01■■■□□ 2.71
APEX1-204ENST00000553368 MYO15BQ96JP2 1530 aa31.87■■■□□ 2.69
APEX1-204ENST00000553368 PABPN1Q86U42 306 aaKnown RBP eCLIP31.8■■■□□ 2.68
APEX1-204ENST00000553368 UNC13AQ9UPW8 1703 aa31.78■■■□□ 2.68
APEX1-204ENST00000553368 BICRAQ9NZM4 1560 aa31.6■■■□□ 2.65
APEX1-204ENST00000553368 ZCCHC6Q5VYS8 1495 aaKnown RBP31.46■■■□□ 2.63
APEX1-204ENST00000553368 DCAF1Q9Y4B6 1507 aa31.42■■■□□ 2.62
APEX1-204ENST00000553368 SHROOM4Q9ULL8 1493 aa31.19■■■□□ 2.58
APEX1-204ENST00000553368 SCRIBQ14160 1630 aa31.03■■■□□ 2.56
APEX1-204ENST00000553368 CC2D2AQ9P2K1 1620 aa30.88■■■□□ 2.53
APEX1-204ENST00000553368 EIF4G1Q04637 1599 aaKnown RBP30.81■■■□□ 2.52
APEX1-204ENST00000553368 CECR2Q9BXF3 1484 aa30.81■■■□□ 2.52
APEX1-204ENST00000553368 NCAPD3P42695 1498 aa29.84■■■□□ 2.37
APEX1-204ENST00000553368 ATAD2BQ9ULI0 1458 aa29.71■■■□□ 2.35
APEX1-204ENST00000553368 DNAJC5Q9H3Z4 198 aa29.64■■■□□ 2.34
APEX1-204ENST00000553368 SMARCA4P51532 1647 aa29.63■■■□□ 2.33
APEX1-204ENST00000553368 SMARCA2P51531 1590 aa29.6■■■□□ 2.33
APEX1-204ENST00000553368 HMGXB3Q12766 1538 aa29.58■■■□□ 2.33
APEX1-204ENST00000553368 CUX2O14529 1486 aa29.54■■■□□ 2.32
APEX1-204ENST00000553368 ERCC6Q03468 1493 aa29.48■■■□□ 2.31
APEX1-204ENST00000553368 BAZ1AQ9NRL2 1556 aaPredicted RBP29.48■■■□□ 2.31
APEX1-204ENST00000553368 PEG3Q9GZU2 1588 aa29.39■■■□□ 2.3
APEX1-204ENST00000553368 BAZ1BQ9UIG0 1483 aaKnown RBP29.38■■■□□ 2.29
APEX1-204ENST00000553368 NESP48681 1621 aa29.34■■■□□ 2.29
APEX1-204ENST00000553368 MROH2BQ7Z745 1585 aa29.26■■■□□ 2.28
APEX1-204ENST00000553368 LAMC3Q9Y6N6 1575 aa29.15■■■□□ 2.26
APEX1-204ENST00000553368 THOC2Q8NI27 1593 aaKnown RBP29.08■■■□□ 2.25
APEX1-204ENST00000553368 PDS5BQ9NTI5 1447 aa28.98■■■□□ 2.23
APEX1-204ENST00000553368 KIF21AQ7Z4S6 1674 aa28.95■■■□□ 2.22
APEX1-204ENST00000553368 CADPSQ9ULU8 1353 aa28.91■■■□□ 2.22
APEX1-204ENST00000553368 WIZO95785 1651 aa28.89■■■□□ 2.21
APEX1-204ENST00000553368 MRC2Q9UBG0 1479 aa28.72■■■□□ 2.19
APEX1-204ENST00000553368 WDR62O43379 1518 aa28.67■■■□□ 2.18
APEX1-204ENST00000553368 RSF1Q96T23 1441 aaPredicted RBP28.64■■■□□ 2.18
APEX1-204ENST00000553368 CEP164Q9UPV0 1460 aa28.58■■■□□ 2.17
APEX1-204ENST00000553368 CFTRP13569 1480 aa28.57■■■□□ 2.16
APEX1-204ENST00000553368 FANCD2Q9BXW9 1451 aa28.55■■■□□ 2.16
APEX1-204ENST00000553368 TOP2AP11388 1531 aaKnown RBP28.53■■■□□ 2.16
APEX1-204ENST00000553368 URB2Q14146 1524 aaKnown RBP28.33■■■□□ 2.13
APEX1-204ENST00000553368 PRDM2Q13029 1718 aa28.23■■■□□ 2.11
APEX1-204ENST00000553368 CCDC88BA6NC98 1476 aa28.21■■■□□ 2.11
APEX1-204ENST00000553368 TRIM41Q8WV44 630 aa28.2■■■□□ 2.1
APEX1-204ENST00000553368 OSCARQ8IYS5 282 aa28.16■■■□□ 2.1
APEX1-204ENST00000553368 IFT140Q96RY7 1462 aa28.04■■■□□ 2.08
APEX1-204ENST00000553368 TOPBP1Q92547 1522 aa28.01■■■□□ 2.07
APEX1-204ENST00000553368 ZNF608Q9ULD9 1512 aaPredicted RBP27.99■■■□□ 2.07
APEX1-204ENST00000553368 ABCC8Q09428 1581 aa27.96■■■□□ 2.07
APEX1-204ENST00000553368 DNMBPQ6XZF7 1577 aa27.9■■■□□ 2.06
APEX1-204ENST00000553368 EIF4G3O43432 1585 aaKnown RBP27.81■■■□□ 2.04
APEX1-204ENST00000553368 RIMBP3CA6NJZ7 1639 aa27.78■■■□□ 2.04
APEX1-204ENST00000553368 RIMBP3BA6NNM3 1639 aa27.78■■■□□ 2.04
APEX1-204ENST00000553368 RIMBP3Q9UFD9 1639 aa27.78■■■□□ 2.04
APEX1-204ENST00000553368 TARBP1Q13395 1621 aaKnown RBP27.78■■■□□ 2.04
APEX1-204ENST00000553368 AQRO60306 1485 aaKnown RBP eCLIP27.72■■■□□ 2.033e-9■■■■■ 26.9
APEX1-204ENST00000553368 POLA1P09884 1462 aaPredicted RBP27.72■■■□□ 2.03
APEX1-204ENST00000553368 ARHGEF11O15085 1522 aa27.69■■■□□ 2.02
APEX1-204ENST00000553368 CHD1O14646 1710 aa27.61■■■□□ 2.01
APEX1-204ENST00000553368 RAD54L2Q9Y4B4 1467 aa27.61■■■□□ 2.01
APEX1-204ENST00000553368 SOGA1O94964 1423 aa27.59■■■□□ 2.01
APEX1-204ENST00000553368 TDRD9Q8NDG6 1382 aaKnown RBP27.54■■■□□ 2
APEX1-204ENST00000553368 FGD5Q6ZNL6 1462 aa27.51■■■□□ 2
APEX1-204ENST00000553368 WDR97A6NE52 1622 aa27.51■■□□□ 1.99
APEX1-204ENST00000553368 FBLN2P98095 1184 aa27.5■■□□□ 1.99
APEX1-204ENST00000553368 CUX1P39880 1505 aa27.49■■□□□ 1.99
APEX1-204ENST00000553368 CYB5RLQ6IPT4 315 aa27.48■■□□□ 1.99
APEX1-204ENST00000553368 SNAPC4Q5SXM2 1469 aa27.43■■□□□ 1.98
APEX1-204ENST00000553368 ARAP1Q96P48 1450 aa27.43■■□□□ 1.98
APEX1-204ENST00000553368 MAGI1Q96QZ7 1491 aaPredicted RBP27.38■■□□□ 1.97
APEX1-204ENST00000553368 GRIN2BQ13224 1484 aa27.37■■□□□ 1.97
APEX1-204ENST00000553368 CLASP1Q7Z460 1538 aa27.35■■□□□ 1.97
APEX1-204ENST00000553368 CHMP7Q8WUX9 453 aaPredicted RBP27.33■■□□□ 1.97
APEX1-204ENST00000553368 SYNJ1O43426 1573 aa27.29■■□□□ 1.96
APEX1-204ENST00000553368 SYNJ2O15056 1496 aa27.28■■□□□ 1.96
APEX1-204ENST00000553368 GAPVD1Q14C86 1478 aa27.25■■□□□ 1.95
APEX1-204ENST00000553368 ABCA10Q8WWZ4 1543 aa27.23■■□□□ 1.95
APEX1-204ENST00000553368 SUPT5HO00267 1087 aaKnown RBP27.22■■□□□ 1.95
APEX1-204ENST00000553368 PBRM1Q86U86 1689 aa27.21■■□□□ 1.95
APEX1-204ENST00000553368 ABCA5Q8WWZ7 1642 aa27.18■■□□□ 1.94
APEX1-204ENST00000553368 TRHP20396 242 aaPredicted RBP27.17■■□□□ 1.94
APEX1-204ENST00000553368 WRNQ14191 1432 aaPredicted RBP eCLIP27.08■■□□□ 1.935e-6■■■■■ 29.2
APEX1-204ENST00000553368 TOP2BQ02880 1626 aa27.03■■□□□ 1.92
APEX1-204ENST00000553368 BIVM-ERCC5R4GMW8 1640 aa27.03■■□□□ 1.92
APEX1-204ENST00000553368 GRIN2AQ12879 1464 aa27■■□□□ 1.91
APEX1-204ENST00000553368 ADAMTS12P58397 1594 aa26.97■■□□□ 1.91
APEX1-204ENST00000553368 NUP160Q12769 1436 aa26.95■■□□□ 1.9
APEX1-204ENST00000553368 CEP170Q5SW79 1584 aa26.92■■□□□ 1.9
APEX1-204ENST00000553368 FHAD1B1AJZ9 1412 aa26.91■■□□□ 1.9
APEX1-204ENST00000553368 ERCC6L2Q5T890 1561 aa26.88■■□□□ 1.89
APEX1-204ENST00000553368 ERICH3Q5RHP9 1530 aa26.88■■□□□ 1.89
APEX1-204ENST00000553368 SHROOM2Q13796 1616 aa26.83■■□□□ 1.88
APEX1-204ENST00000553368 JPH4Q96JJ6 628 aa26.67■■□□□ 1.86
APEX1-204ENST00000553368 PRG4Q92954 1404 aaPredicted RBP26.65■■□□□ 1.86
APEX1-204ENST00000553368 RUSC2Q8N2Y8 1516 aa26.6■■□□□ 1.85
APEX1-204ENST00000553368 IGF1RP08069 1367 aa26.54■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms