RNA–Protein interactions for RNA: ENST00000553361.5

XRCC3-204, Transcript of X-ray repair cross complementing 3, humanhuman

TSL 5

Gene XRCC3, Length 746 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-204ENST00000553361 NISCHQ9Y2I1 1504 aa40.98■■■■■ 4.15
XRCC3-204ENST00000553361 ABCC9O60706 1549 aa36.66■■■■□ 3.46
XRCC3-204ENST00000553361 CCDC180Q9P1Z9 1646 aa36.52■■■■□ 3.44
XRCC3-204ENST00000553361 DCAF8L2P0C7V8 631 aa34.83■■■■□ 3.17
XRCC3-204ENST00000553361 RB1CC1Q8TDY2 1594 aa34.82■■■■□ 3.16
XRCC3-204ENST00000553361 NACADO15069 1562 aa34.62■■■■□ 3.13
XRCC3-204ENST00000553361 DNAJC5BQ9UF47 199 aa34.36■■■■□ 3.09
XRCC3-204ENST00000553361 PABPN1Q86U42 306 aaKnown RBP eCLIP34.28■■■■□ 3.08
XRCC3-204ENST00000553361 MYO15BQ96JP2 1530 aa34.14■■■■□ 3.06
XRCC3-204ENST00000553361 ZCCHC6Q5VYS8 1495 aaKnown RBP33.95■■■■□ 3.03
XRCC3-204ENST00000553361 UNC13AQ9UPW8 1703 aa33.87■■■■□ 3.01
XRCC3-204ENST00000553361 BICRAQ9NZM4 1560 aa33.79■■■■□ 3
XRCC3-204ENST00000553361 DCAF1Q9Y4B6 1507 aa33.77■■■■□ 3
XRCC3-204ENST00000553361 SCRIBQ14160 1630 aa33.45■■■□□ 2.95
XRCC3-204ENST00000553361 SHROOM4Q9ULL8 1493 aa33.3■■■□□ 2.92
XRCC3-204ENST00000553361 CC2D2AQ9P2K1 1620 aa33.02■■■□□ 2.88
XRCC3-204ENST00000553361 CECR2Q9BXF3 1484 aa32.99■■■□□ 2.87
XRCC3-204ENST00000553361 EIF4G1Q04637 1599 aaKnown RBP32.98■■■□□ 2.87
XRCC3-204ENST00000553361 NCAPD3P42695 1498 aa32.03■■■□□ 2.72
XRCC3-204ENST00000553361 ATAD2BQ9ULI0 1458 aa31.97■■■□□ 2.71
XRCC3-204ENST00000553361 SMARCA4P51532 1647 aa31.87■■■□□ 2.69
XRCC3-204ENST00000553361 SMARCA2P51531 1590 aa31.81■■■□□ 2.68
XRCC3-204ENST00000553361 BAZ1AQ9NRL2 1556 aaPredicted RBP31.76■■■□□ 2.67
XRCC3-204ENST00000553361 HMGXB3Q12766 1538 aa31.7■■■□□ 2.67
XRCC3-204ENST00000553361 BAZ1BQ9UIG0 1483 aaKnown RBP31.65■■■□□ 2.66
XRCC3-204ENST00000553361 ERCC6Q03468 1493 aa31.65■■■□□ 2.66
XRCC3-204ENST00000553361 MROH2BQ7Z745 1585 aa31.6■■■□□ 2.65
XRCC3-204ENST00000553361 PEG3Q9GZU2 1588 aa31.52■■■□□ 2.64
XRCC3-204ENST00000553361 NESP48681 1621 aa31.51■■■□□ 2.63
XRCC3-204ENST00000553361 CUX2O14529 1486 aa31.45■■■□□ 2.62
XRCC3-204ENST00000553361 DNAJC5Q9H3Z4 198 aa31.42■■■□□ 2.62
XRCC3-204ENST00000553361 LAMC3Q9Y6N6 1575 aa31.2■■■□□ 2.58
XRCC3-204ENST00000553361 WIZO95785 1651 aa31.16■■■□□ 2.58
XRCC3-204ENST00000553361 PDS5BQ9NTI5 1447 aa31.14■■■□□ 2.58
XRCC3-204ENST00000553361 CADPSQ9ULU8 1353 aa31.12■■■□□ 2.57
XRCC3-204ENST00000553361 RSF1Q96T23 1441 aaPredicted RBP31.04■■■□□ 2.56
XRCC3-204ENST00000553361 THOC2Q8NI27 1593 aaKnown RBP31.01■■■□□ 2.56
XRCC3-204ENST00000553361 KIF21AQ7Z4S6 1674 aa30.94■■■□□ 2.54
XRCC3-204ENST00000553361 MRC2Q9UBG0 1479 aa30.81■■■□□ 2.52
XRCC3-204ENST00000553361 TOP2AP11388 1531 aaKnown RBP30.78■■■□□ 2.52
XRCC3-204ENST00000553361 CFTRP13569 1480 aa30.74■■■□□ 2.51
XRCC3-204ENST00000553361 FANCD2Q9BXW9 1451 aa30.73■■■□□ 2.51
XRCC3-204ENST00000553361 CEP164Q9UPV0 1460 aa30.72■■■□□ 2.51
XRCC3-204ENST00000553361 WDR62O43379 1518 aa30.68■■■□□ 2.5
XRCC3-204ENST00000553361 CCDC88BA6NC98 1476 aa30.53■■■□□ 2.48
XRCC3-204ENST00000553361 URB2Q14146 1524 aaKnown RBP30.44■■■□□ 2.46
XRCC3-204ENST00000553361 OSCARQ8IYS5 282 aa30.21■■■□□ 2.43
XRCC3-204ENST00000553361 TRIM41Q8WV44 630 aa30.19■■■□□ 2.42
XRCC3-204ENST00000553361 PRDM2Q13029 1718 aa30.16■■■□□ 2.42
XRCC3-204ENST00000553361 TOPBP1Q92547 1522 aa30.13■■■□□ 2.41
XRCC3-204ENST00000553361 IFT140Q96RY7 1462 aa30.12■■■□□ 2.41
XRCC3-204ENST00000553361 ZNF608Q9ULD9 1512 aaPredicted RBP30.08■■■□□ 2.41
XRCC3-204ENST00000553361 ABCC8Q09428 1581 aa30.07■■■□□ 2.4
XRCC3-204ENST00000553361 DNMBPQ6XZF7 1577 aa29.98■■■□□ 2.39
XRCC3-204ENST00000553361 SUPT5HO00267 1087 aaKnown RBP29.95■■■□□ 2.39
XRCC3-204ENST00000553361 AQRO60306 1485 aaKnown RBP eCLIP29.87■■■□□ 2.376e-6■■■■□ 25.1
XRCC3-204ENST00000553361 POLA1P09884 1462 aaPredicted RBP29.85■■■□□ 2.37
XRCC3-204ENST00000553361 EIF4G3O43432 1585 aaKnown RBP29.8■■■□□ 2.36
XRCC3-204ENST00000553361 RAD54L2Q9Y4B4 1467 aa29.8■■■□□ 2.36
XRCC3-204ENST00000553361 SOGA1O94964 1423 aa29.79■■■□□ 2.36
XRCC3-204ENST00000553361 TARBP1Q13395 1621 aaKnown RBP29.78■■■□□ 2.36
XRCC3-204ENST00000553361 FBLN2P98095 1184 aa29.77■■■□□ 2.36
XRCC3-204ENST00000553361 TDRD9Q8NDG6 1382 aaKnown RBP29.75■■■□□ 2.35
XRCC3-204ENST00000553361 FGD5Q6ZNL6 1462 aa29.68■■■□□ 2.34
XRCC3-204ENST00000553361 CUX1P39880 1505 aa29.66■■■□□ 2.34
XRCC3-204ENST00000553361 RIMBP3CA6NJZ7 1639 aa29.6■■■□□ 2.33
XRCC3-204ENST00000553361 RIMBP3BA6NNM3 1639 aa29.6■■■□□ 2.33
XRCC3-204ENST00000553361 RIMBP3Q9UFD9 1639 aa29.6■■■□□ 2.33
XRCC3-204ENST00000553361 ARHGEF11O15085 1522 aa29.57■■■□□ 2.32
XRCC3-204ENST00000553361 CYB5RLQ6IPT4 315 aa29.54■■■□□ 2.32
XRCC3-204ENST00000553361 CHMP7Q8WUX9 453 aaPredicted RBP29.54■■■□□ 2.32
XRCC3-204ENST00000553361 SNAPC4Q5SXM2 1469 aa29.51■■■□□ 2.31
XRCC3-204ENST00000553361 CHD1O14646 1710 aa29.5■■■□□ 2.31
XRCC3-204ENST00000553361 GRIN2BQ13224 1484 aa29.46■■■□□ 2.31
XRCC3-204ENST00000553361 WDR97A6NE52 1622 aa29.42■■■□□ 2.3
XRCC3-204ENST00000553361 MAGI1Q96QZ7 1491 aaPredicted RBP29.4■■■□□ 2.3
XRCC3-204ENST00000553361 GAPVD1Q14C86 1478 aa29.38■■■□□ 2.29
XRCC3-204ENST00000553361 ABCA10Q8WWZ4 1543 aa29.33■■■□□ 2.29
XRCC3-204ENST00000553361 SYNJ2O15056 1496 aa29.32■■■□□ 2.28
XRCC3-204ENST00000553361 WRNQ14191 1432 aaPredicted RBP eCLIP29.31■■■□□ 2.28
XRCC3-204ENST00000553361 ARAP1Q96P48 1450 aa29.3■■■□□ 2.28
XRCC3-204ENST00000553361 SYNJ1O43426 1573 aa29.25■■■□□ 2.27
XRCC3-204ENST00000553361 CLASP1Q7Z460 1538 aa29.23■■■□□ 2.27
XRCC3-204ENST00000553361 ABCA5Q8WWZ7 1642 aa29.19■■■□□ 2.26
XRCC3-204ENST00000553361 TRHP20396 242 aaPredicted RBP29.18■■■□□ 2.26
XRCC3-204ENST00000553361 PBRM1Q86U86 1689 aa29.17■■■□□ 2.26
XRCC3-204ENST00000553361 TOP2BQ02880 1626 aa29.16■■■□□ 2.26
XRCC3-204ENST00000553361 BIVM-ERCC5R4GMW8 1640 aa29.11■■■□□ 2.25
XRCC3-204ENST00000553361 GRIN2AQ12879 1464 aa29.05■■■□□ 2.24
XRCC3-204ENST00000553361 FHAD1B1AJZ9 1412 aa29.02■■■□□ 2.24
XRCC3-204ENST00000553361 ADAMTS12P58397 1594 aa28.98■■■□□ 2.23
XRCC3-204ENST00000553361 NUP160Q12769 1436 aa28.95■■■□□ 2.23
XRCC3-204ENST00000553361 ERICH3Q5RHP9 1530 aa28.94■■■□□ 2.22
XRCC3-204ENST00000553361 CEP170Q5SW79 1584 aa28.9■■■□□ 2.22
XRCC3-204ENST00000553361 ERCC6L2Q5T890 1561 aa28.85■■■□□ 2.21
XRCC3-204ENST00000553361 JPH4Q96JJ6 628 aa28.81■■■□□ 2.2
XRCC3-204ENST00000553361 IGF1RP08069 1367 aa28.75■■■□□ 2.19
XRCC3-204ENST00000553361 PRG4Q92954 1404 aaPredicted RBP28.74■■■□□ 2.19
XRCC3-204ENST00000553361 KIF27Q86VH2 1401 aa28.72■■■□□ 2.19
XRCC3-204ENST00000553361 SHROOM2Q13796 1616 aa28.69■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms