RNA–Protein interactions for RNA: ENST00000553338.1

IFT43-204, Transcript of intraflagellar transport 43, humanhuman

TSL 5

Gene IFT43, Length 684 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT43-204ENST00000553338 NISCHQ9Y2I1 1504 aa48.28■■■■■ 5.32
IFT43-204ENST00000553338 CCDC180Q9P1Z9 1646 aa43.19■■■■■ 4.5
IFT43-204ENST00000553338 ABCC9O60706 1549 aa42.86■■■■■ 4.45
IFT43-204ENST00000553338 RB1CC1Q8TDY2 1594 aa40.95■■■■■ 4.15
IFT43-204ENST00000553338 NACADO15069 1562 aa40.74■■■■■ 4.11
IFT43-204ENST00000553338 DCAF8L2P0C7V8 631 aa40.66■■■■■ 4.1
IFT43-204ENST00000553338 MYO15BQ96JP2 1530 aa40.26■■■■■ 4.04
IFT43-204ENST00000553338 ZCCHC6Q5VYS8 1495 aaKnown RBP40.1■■■■■ 4.01
IFT43-204ENST00000553338 UNC13AQ9UPW8 1703 aa40■■■■□ 3.99
IFT43-204ENST00000553338 PABPN1Q86U42 306 aaKnown RBP eCLIP39.96■■■■□ 3.99
IFT43-204ENST00000553338 DCAF1Q9Y4B6 1507 aa39.89■■■■□ 3.98
IFT43-204ENST00000553338 DNAJC5BQ9UF47 199 aa39.82■■■■□ 3.97
IFT43-204ENST00000553338 BICRAQ9NZM4 1560 aa39.71■■■■□ 3.95
IFT43-204ENST00000553338 SCRIBQ14160 1630 aa39.42■■■■□ 3.9
IFT43-204ENST00000553338 SHROOM4Q9ULL8 1493 aa39.22■■■■□ 3.87
IFT43-204ENST00000553338 EIF4G1Q04637 1599 aaKnown RBP38.73■■■■□ 3.79
IFT43-204ENST00000553338 CC2D2AQ9P2K1 1620 aa38.72■■■■□ 3.79
IFT43-204ENST00000553338 CECR2Q9BXF3 1484 aa38.56■■■■□ 3.76
IFT43-204ENST00000553338 SMARCA4P51532 1647 aa37.61■■■■□ 3.61
IFT43-204ENST00000553338 NCAPD3P42695 1498 aa37.58■■■■□ 3.61
IFT43-204ENST00000553338 ATAD2BQ9ULI0 1458 aa37.53■■■■□ 3.6
IFT43-204ENST00000553338 SMARCA2P51531 1590 aa37.47■■■■□ 3.59
IFT43-204ENST00000553338 BAZ1AQ9NRL2 1556 aaPredicted RBP37.47■■■■□ 3.59
IFT43-204ENST00000553338 HMGXB3Q12766 1538 aa37.36■■■■□ 3.57
IFT43-204ENST00000553338 BAZ1BQ9UIG0 1483 aaKnown RBP37.22■■■■□ 3.55
IFT43-204ENST00000553338 MROH2BQ7Z745 1585 aa37.21■■■■□ 3.55
IFT43-204ENST00000553338 PEG3Q9GZU2 1588 aa37.21■■■■□ 3.55
IFT43-204ENST00000553338 ERCC6Q03468 1493 aa37.01■■■■□ 3.51
IFT43-204ENST00000553338 NESP48681 1621 aa36.91■■■■□ 3.5
IFT43-204ENST00000553338 WIZO95785 1651 aa36.8■■■■□ 3.48
IFT43-204ENST00000553338 CUX2O14529 1486 aa36.78■■■■□ 3.48
IFT43-204ENST00000553338 LAMC3Q9Y6N6 1575 aa36.7■■■■□ 3.47
IFT43-204ENST00000553338 RSF1Q96T23 1441 aaPredicted RBP36.57■■■■□ 3.44
IFT43-204ENST00000553338 PDS5BQ9NTI5 1447 aa36.49■■■■□ 3.43
IFT43-204ENST00000553338 CADPSQ9ULU8 1353 aa36.47■■■■□ 3.43
IFT43-204ENST00000553338 KIF21AQ7Z4S6 1674 aa36.46■■■■□ 3.43
IFT43-204ENST00000553338 THOC2Q8NI27 1593 aaKnown RBP36.46■■■■□ 3.43
IFT43-204ENST00000553338 TOP2AP11388 1531 aaKnown RBP36.37■■■■□ 3.41
IFT43-204ENST00000553338 DNAJC5Q9H3Z4 198 aa36.31■■■■□ 3.4
IFT43-204ENST00000553338 MRC2Q9UBG0 1479 aa36.16■■■■□ 3.38
IFT43-204ENST00000553338 CFTRP13569 1480 aa36.13■■■■□ 3.37
IFT43-204ENST00000553338 CEP164Q9UPV0 1460 aa36.1■■■■□ 3.37
IFT43-204ENST00000553338 FANCD2Q9BXW9 1451 aa36.08■■■■□ 3.37
IFT43-204ENST00000553338 WDR62O43379 1518 aa36.05■■■■□ 3.36
IFT43-204ENST00000553338 CCDC88BA6NC98 1476 aa35.93■■■■□ 3.34
IFT43-204ENST00000553338 PRDM2Q13029 1718 aa35.83■■■■□ 3.33
IFT43-204ENST00000553338 URB2Q14146 1524 aaKnown RBP35.75■■■■□ 3.31
IFT43-204ENST00000553338 TOPBP1Q92547 1522 aa35.43■■■■□ 3.26
IFT43-204ENST00000553338 ABCC8Q09428 1581 aa35.38■■■■□ 3.25
IFT43-204ENST00000553338 IFT140Q96RY7 1462 aa35.35■■■■□ 3.25
IFT43-204ENST00000553338 DNMBPQ6XZF7 1577 aa35.34■■■■□ 3.25
IFT43-204ENST00000553338 SUPT5HO00267 1087 aaKnown RBP35.27■■■■□ 3.24
IFT43-204ENST00000553338 ZNF608Q9ULD9 1512 aaPredicted RBP35.25■■■■□ 3.23
IFT43-204ENST00000553338 OSCARQ8IYS5 282 aa35.16■■■■□ 3.22
IFT43-204ENST00000553338 EIF4G3O43432 1585 aaKnown RBP35.1■■■■□ 3.21
IFT43-204ENST00000553338 POLA1P09884 1462 aaPredicted RBP35.09■■■■□ 3.21
IFT43-204ENST00000553338 TARBP1Q13395 1621 aaKnown RBP35.08■■■■□ 3.21
IFT43-204ENST00000553338 AQRO60306 1485 aaKnown RBP eCLIP34.97■■■■□ 3.19
IFT43-204ENST00000553338 RAD54L2Q9Y4B4 1467 aa34.97■■■■□ 3.19
IFT43-204ENST00000553338 CUX1P39880 1505 aa34.96■■■■□ 3.19
IFT43-204ENST00000553338 TRIM41Q8WV44 630 aa34.95■■■■□ 3.19
IFT43-204ENST00000553338 SOGA1O94964 1423 aa34.95■■■■□ 3.19
IFT43-204ENST00000553338 FGD5Q6ZNL6 1462 aa34.94■■■■□ 3.18
IFT43-204ENST00000553338 TDRD9Q8NDG6 1382 aaKnown RBP34.83■■■■□ 3.17
IFT43-204ENST00000553338 CHD1O14646 1710 aa34.77■■■■□ 3.16
IFT43-204ENST00000553338 WDR97A6NE52 1622 aa34.76■■■■□ 3.15
IFT43-204ENST00000553338 FBLN2P98095 1184 aa34.72■■■■□ 3.15
IFT43-204ENST00000553338 RIMBP3CA6NJZ7 1639 aa34.67■■■■□ 3.14
IFT43-204ENST00000553338 RIMBP3BA6NNM3 1639 aa34.67■■■■□ 3.14
IFT43-204ENST00000553338 RIMBP3Q9UFD9 1639 aa34.67■■■■□ 3.14
IFT43-204ENST00000553338 SNAPC4Q5SXM2 1469 aa34.66■■■■□ 3.14
IFT43-204ENST00000553338 GRIN2BQ13224 1484 aa34.6■■■■□ 3.13
IFT43-204ENST00000553338 ARHGEF11O15085 1522 aa34.6■■■■□ 3.13
IFT43-204ENST00000553338 MAGI1Q96QZ7 1491 aaPredicted RBP34.57■■■■□ 3.12
IFT43-204ENST00000553338 ABCA10Q8WWZ4 1543 aa34.54■■■■□ 3.12
IFT43-204ENST00000553338 GAPVD1Q14C86 1478 aa34.53■■■■□ 3.12
IFT43-204ENST00000553338 WRNQ14191 1432 aaPredicted RBP eCLIP34.52■■■■□ 3.12
IFT43-204ENST00000553338 PBRM1Q86U86 1689 aa34.51■■■■□ 3.12
IFT43-204ENST00000553338 CHMP7Q8WUX9 453 aaPredicted RBP34.51■■■■□ 3.12
IFT43-204ENST00000553338 TOP2BQ02880 1626 aa34.49■■■■□ 3.11
IFT43-204ENST00000553338 BIVM-ERCC5R4GMW8 1640 aa34.49■■■■□ 3.11
IFT43-204ENST00000553338 SYNJ1O43426 1573 aa34.47■■■■□ 3.11
IFT43-204ENST00000553338 ABCA5Q8WWZ7 1642 aa34.47■■■■□ 3.11
IFT43-204ENST00000553338 SYNJ2O15056 1496 aa34.45■■■■□ 3.1
IFT43-204ENST00000553338 CLASP1Q7Z460 1538 aa34.35■■■■□ 3.09
IFT43-204ENST00000553338 CYB5RLQ6IPT4 315 aa34.33■■■■□ 3.09
IFT43-204ENST00000553338 ARAP1Q96P48 1450 aa34.27■■■■□ 3.08
IFT43-204ENST00000553338 ADAMTS12P58397 1594 aa34.19■■■■□ 3.06
IFT43-204ENST00000553338 GRIN2AQ12879 1464 aa34.16■■■■□ 3.06
IFT43-204ENST00000553338 ERICH3Q5RHP9 1530 aa34.12■■■■□ 3.05
IFT43-204ENST00000553338 FHAD1B1AJZ9 1412 aa34.11■■■■□ 3.05
IFT43-204ENST00000553338 CEP170Q5SW79 1584 aa34.02■■■■□ 3.04
IFT43-204ENST00000553338 NUP160Q12769 1436 aa34.01■■■■□ 3.03
IFT43-204ENST00000553338 TRHP20396 242 aaPredicted RBP33.87■■■■□ 3.01
IFT43-204ENST00000553338 ERCC6L2Q5T890 1561 aa33.85■■■■□ 3.01
IFT43-204ENST00000553338 KIF27Q86VH2 1401 aa33.84■■■■□ 3.01
IFT43-204ENST00000553338 SHROOM2Q13796 1616 aa33.82■■■■□ 3
IFT43-204ENST00000553338 IGF1RP08069 1367 aa33.74■■■□□ 2.99
IFT43-204ENST00000553338 CUL7Q14999 1698 aa33.72■■■□□ 2.99
IFT43-204ENST00000553338 RUSC2Q8N2Y8 1516 aa33.71■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms