RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 NISCHQ9Y2I1 1504 aa23.17■■□□□ 1.3
SYNE2-209ENST00000553308 ABCC9O60706 1549 aa21.09■□□□□ 0.97
SYNE2-209ENST00000553308 CCDC180Q9P1Z9 1646 aa20.88■□□□□ 0.93
SYNE2-209ENST00000553308 RB1CC1Q8TDY2 1594 aa19.96■□□□□ 0.79
SYNE2-209ENST00000553308 DNAJC5BQ9UF47 199 aa19.95■□□□□ 0.78
SYNE2-209ENST00000553308 NACADO15069 1562 aa19.77■□□□□ 0.76
SYNE2-209ENST00000553308 DCAF8L2P0C7V8 631 aa19.61■□□□□ 0.73
SYNE2-209ENST00000553308 PABPN1Q86U42 306 aaKnown RBP eCLIP19.59■□□□□ 0.73
SYNE2-209ENST00000553308 UNC13AQ9UPW8 1703 aa19.54■□□□□ 0.72
SYNE2-209ENST00000553308 MYO15BQ96JP2 1530 aa19.42■□□□□ 0.7
SYNE2-209ENST00000553308 BICRAQ9NZM4 1560 aa19.42■□□□□ 0.7
SYNE2-209ENST00000553308 ZCCHC6Q5VYS8 1495 aaKnown RBP19.17■□□□□ 0.66
SYNE2-209ENST00000553308 DCAF1Q9Y4B6 1507 aa19.1■□□□□ 0.65
SYNE2-209ENST00000553308 SHROOM4Q9ULL8 1493 aa19.09■□□□□ 0.65
SYNE2-209ENST00000553308 SCRIBQ14160 1630 aa19.04■□□□□ 0.64
SYNE2-209ENST00000553308 CC2D2AQ9P2K1 1620 aa19.03■□□□□ 0.64
SYNE2-209ENST00000553308 CECR2Q9BXF3 1484 aa19■□□□□ 0.63
SYNE2-209ENST00000553308 EIF4G1Q04637 1599 aaKnown RBP18.94■□□□□ 0.62
SYNE2-209ENST00000553308 DNAJC5Q9H3Z4 198 aa18.42■□□□□ 0.54
SYNE2-209ENST00000553308 NCAPD3P42695 1498 aa18.25■□□□□ 0.51
SYNE2-209ENST00000553308 CUX2O14529 1486 aa18.23■□□□□ 0.51
SYNE2-209ENST00000553308 ERCC6Q03468 1493 aa18.2■□□□□ 0.5
SYNE2-209ENST00000553308 ATAD2BQ9ULI0 1458 aa18.19■□□□□ 0.5
SYNE2-209ENST00000553308 SMARCA4P51532 1647 aa18.13■□□□□ 0.49
SYNE2-209ENST00000553308 HMGXB3Q12766 1538 aa18.12■□□□□ 0.49
SYNE2-209ENST00000553308 SMARCA2P51531 1590 aa18.11■□□□□ 0.49
SYNE2-209ENST00000553308 NESP48681 1621 aa18.07■□□□□ 0.48
SYNE2-209ENST00000553308 BAZ1BQ9UIG0 1483 aaKnown RBP18■□□□□ 0.47
SYNE2-209ENST00000553308 BAZ1AQ9NRL2 1556 aaPredicted RBP18■□□□□ 0.47
SYNE2-209ENST00000553308 PEG3Q9GZU2 1588 aa17.94■□□□□ 0.46
SYNE2-209ENST00000553308 THOC2Q8NI27 1593 aaKnown RBP17.93■□□□□ 0.46
SYNE2-209ENST00000553308 LAMC3Q9Y6N6 1575 aa17.88■□□□□ 0.45
SYNE2-209ENST00000553308 MROH2BQ7Z745 1585 aa17.87■□□□□ 0.45
SYNE2-209ENST00000553308 KIF21AQ7Z4S6 1674 aa17.83■□□□□ 0.45
SYNE2-209ENST00000553308 PDS5BQ9NTI5 1447 aa17.76■□□□□ 0.43
SYNE2-209ENST00000553308 CADPSQ9ULU8 1353 aa17.68■□□□□ 0.42
SYNE2-209ENST00000553308 WIZO95785 1651 aa17.65■□□□□ 0.42
SYNE2-209ENST00000553308 MRC2Q9UBG0 1479 aa17.65■□□□□ 0.42
SYNE2-209ENST00000553308 WDR62O43379 1518 aa17.62■□□□□ 0.41
SYNE2-209ENST00000553308 TRIM41Q8WV44 630 aa17.56■□□□□ 0.4
SYNE2-209ENST00000553308 CEP164Q9UPV0 1460 aa17.55■□□□□ 0.4
SYNE2-209ENST00000553308 FANCD2Q9BXW9 1451 aa17.5■□□□□ 0.39
SYNE2-209ENST00000553308 CFTRP13569 1480 aa17.45■□□□□ 0.38
SYNE2-209ENST00000553308 RSF1Q96T23 1441 aaPredicted RBP17.41■□□□□ 0.38
SYNE2-209ENST00000553308 TOP2AP11388 1531 aaKnown RBP17.41■□□□□ 0.38
SYNE2-209ENST00000553308 URB2Q14146 1524 aaKnown RBP17.39■□□□□ 0.37
SYNE2-209ENST00000553308 OSCARQ8IYS5 282 aa17.33■□□□□ 0.36
SYNE2-209ENST00000553308 PRDM2Q13029 1718 aa17.28■□□□□ 0.36
SYNE2-209ENST00000553308 ZNF608Q9ULD9 1512 aaPredicted RBP17.21■□□□□ 0.34
SYNE2-209ENST00000553308 CCDC88BA6NC98 1476 aa17.19■□□□□ 0.34
SYNE2-209ENST00000553308 RIMBP3CA6NJZ7 1639 aa17.19■□□□□ 0.34
SYNE2-209ENST00000553308 RIMBP3BA6NNM3 1639 aa17.19■□□□□ 0.34
SYNE2-209ENST00000553308 RIMBP3Q9UFD9 1639 aa17.19■□□□□ 0.34
SYNE2-209ENST00000553308 IFT140Q96RY7 1462 aa17.18■□□□□ 0.34
SYNE2-209ENST00000553308 TOPBP1Q92547 1522 aa17.16■□□□□ 0.34
SYNE2-209ENST00000553308 ARHGEF11O15085 1522 aa17.11■□□□□ 0.33
SYNE2-209ENST00000553308 EIF4G3O43432 1585 aaKnown RBP17.11■□□□□ 0.33
SYNE2-209ENST00000553308 DNMBPQ6XZF7 1577 aa17.07■□□□□ 0.32
SYNE2-209ENST00000553308 ABCC8Q09428 1581 aa17.06■□□□□ 0.32
SYNE2-209ENST00000553308 TARBP1Q13395 1621 aaKnown RBP17.03■□□□□ 0.32
SYNE2-209ENST00000553308 CHD1O14646 1710 aa17.02■□□□□ 0.32
SYNE2-209ENST00000553308 AQRO60306 1485 aaKnown RBP eCLIP17.01■□□□□ 0.31
SYNE2-209ENST00000553308 POLA1P09884 1462 aaPredicted RBP16.97■□□□□ 0.31
SYNE2-209ENST00000553308 CYB5RLQ6IPT4 315 aa16.96■□□□□ 0.31
SYNE2-209ENST00000553308 ARAP1Q96P48 1450 aa16.94■□□□□ 0.3
SYNE2-209ENST00000553308 RAD54L2Q9Y4B4 1467 aa16.92■□□□□ 0.3
SYNE2-209ENST00000553308 FBLN2P98095 1184 aa16.91■□□□□ 0.3
SYNE2-209ENST00000553308 TDRD9Q8NDG6 1382 aaKnown RBP16.88■□□□□ 0.29
SYNE2-209ENST00000553308 SOGA1O94964 1423 aa16.87■□□□□ 0.29
SYNE2-209ENST00000553308 SNAPC4Q5SXM2 1469 aa16.85■□□□□ 0.29
SYNE2-209ENST00000553308 TRHP20396 242 aaPredicted RBP16.84■□□□□ 0.29
SYNE2-209ENST00000553308 FGD5Q6ZNL6 1462 aa16.84■□□□□ 0.29
SYNE2-209ENST00000553308 CLASP1Q7Z460 1538 aa16.81■□□□□ 0.28
SYNE2-209ENST00000553308 WDR97A6NE52 1622 aa16.81■□□□□ 0.28
SYNE2-209ENST00000553308 CUX1P39880 1505 aa16.8■□□□□ 0.28
SYNE2-209ENST00000553308 MAGI1Q96QZ7 1491 aaPredicted RBP16.77■□□□□ 0.28
SYNE2-209ENST00000553308 SYNJ1O43426 1573 aa16.77■□□□□ 0.27
SYNE2-209ENST00000553308 GRIN2BQ13224 1484 aa16.75■□□□□ 0.27
SYNE2-209ENST00000553308 CHMP7Q8WUX9 453 aaPredicted RBP16.74■□□□□ 0.27
SYNE2-209ENST00000553308 SYNJ2O15056 1496 aa16.72■□□□□ 0.27
SYNE2-209ENST00000553308 PBRM1Q86U86 1689 aa16.7■□□□□ 0.26
SYNE2-209ENST00000553308 GAPVD1Q14C86 1478 aa16.67■□□□□ 0.26
SYNE2-209ENST00000553308 ABCA5Q8WWZ7 1642 aa16.64■□□□□ 0.25
SYNE2-209ENST00000553308 ABCA10Q8WWZ4 1543 aa16.62■□□□□ 0.25
SYNE2-209ENST00000553308 ERCC6L2Q5T890 1561 aa16.56■□□□□ 0.24
SYNE2-209ENST00000553308 GRIN2AQ12879 1464 aa16.55■□□□□ 0.24
SYNE2-209ENST00000553308 ADAMTS12P58397 1594 aa16.54■□□□□ 0.24
SYNE2-209ENST00000553308 CEP170Q5SW79 1584 aa16.52■□□□□ 0.24
SYNE2-209ENST00000553308 NUP160Q12769 1436 aa16.5■□□□□ 0.23
SYNE2-209ENST00000553308 WRNQ14191 1432 aaPredicted RBP eCLIP16.5■□□□□ 0.23
SYNE2-209ENST00000553308 SUPT5HO00267 1087 aaKnown RBP16.48■□□□□ 0.23
SYNE2-209ENST00000553308 AEBP2Q6ZN18 517 aaPredicted RBP16.47■□□□□ 0.23
SYNE2-209ENST00000553308 BIVM-ERCC5R4GMW8 1640 aa16.47■□□□□ 0.23
SYNE2-209ENST00000553308 TOP2BQ02880 1626 aa16.46■□□□□ 0.23
SYNE2-209ENST00000553308 SHROOM2Q13796 1616 aa16.46■□□□□ 0.23
SYNE2-209ENST00000553308 FHAD1B1AJZ9 1412 aa16.44■□□□□ 0.22
SYNE2-209ENST00000553308 ERICH3Q5RHP9 1530 aa16.4■□□□□ 0.22
SYNE2-209ENST00000553308 KIF13AQ9H1H9 1805 aa16.35■□□□□ 0.21
SYNE2-209ENST00000553308 PRG4Q92954 1404 aaPredicted RBP16.35■□□□□ 0.21
SYNE2-209ENST00000553308 RUSC2Q8N2Y8 1516 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 338.1 ms