RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 NISCHQ9Y2I1 1504 aa46.12■■■■■ 4.97
HDAC4-217ENST00000553145 CCDC180Q9P1Z9 1646 aa41.07■■■■■ 4.17
HDAC4-217ENST00000553145 ABCC9O60706 1549 aa40.4■■■■■ 4.06
HDAC4-217ENST00000553145 RB1CC1Q8TDY2 1594 aa38.73■■■■□ 3.79
HDAC4-217ENST00000553145 NACADO15069 1562 aa38.64■■■■□ 3.78
HDAC4-217ENST00000553145 DCAF8L2P0C7V8 631 aa38.54■■■■□ 3.76
HDAC4-217ENST00000553145 ZCCHC6Q5VYS8 1495 aaKnown RBP38.4■■■■□ 3.74
HDAC4-217ENST00000553145 MYO15BQ96JP2 1530 aa38.34■■■■□ 3.73
HDAC4-217ENST00000553145 DCAF1Q9Y4B6 1507 aa38.12■■■■□ 3.69
HDAC4-217ENST00000553145 UNC13AQ9UPW8 1703 aa37.92■■■■□ 3.66
HDAC4-217ENST00000553145 PABPN1Q86U42 306 aaKnown RBP eCLIP37.7■■■■□ 3.63
HDAC4-217ENST00000553145 BICRAQ9NZM4 1560 aa37.64■■■■□ 3.62
HDAC4-217ENST00000553145 SCRIBQ14160 1630 aa37.5■■■■□ 3.59
HDAC4-217ENST00000553145 DNAJC5BQ9UF47 199 aa37.27■■■■□ 3.56
HDAC4-217ENST00000553145 SHROOM4Q9ULL8 1493 aa37.13■■■■□ 3.54
HDAC4-217ENST00000553145 EIF4G1Q04637 1599 aaKnown RBP36.63■■■■□ 3.45
HDAC4-217ENST00000553145 CC2D2AQ9P2K1 1620 aa36.52■■■■□ 3.44
HDAC4-217ENST00000553145 CECR2Q9BXF3 1484 aa36.29■■■■□ 3.4
HDAC4-217ENST00000553145 SMARCA4P51532 1647 aa35.83■■■■□ 3.33
HDAC4-217ENST00000553145 BAZ1AQ9NRL2 1556 aaPredicted RBP35.73■■■■□ 3.31
HDAC4-217ENST00000553145 ATAD2BQ9ULI0 1458 aa35.67■■■■□ 3.3
HDAC4-217ENST00000553145 NCAPD3P42695 1498 aa35.67■■■■□ 3.3
HDAC4-217ENST00000553145 SMARCA2P51531 1590 aa35.59■■■■□ 3.29
HDAC4-217ENST00000553145 MROH2BQ7Z745 1585 aa35.57■■■■□ 3.28
HDAC4-217ENST00000553145 HMGXB3Q12766 1538 aa35.48■■■■□ 3.27
HDAC4-217ENST00000553145 PEG3Q9GZU2 1588 aa35.47■■■■□ 3.27
HDAC4-217ENST00000553145 BAZ1BQ9UIG0 1483 aaKnown RBP35.35■■■■□ 3.25
HDAC4-217ENST00000553145 WIZO95785 1651 aa35.18■■■■□ 3.22
HDAC4-217ENST00000553145 RSF1Q96T23 1441 aaPredicted RBP35.07■■■■□ 3.21
HDAC4-217ENST00000553145 NESP48681 1621 aa34.93■■■■□ 3.18
HDAC4-217ENST00000553145 ERCC6Q03468 1493 aa34.78■■■■□ 3.16
HDAC4-217ENST00000553145 TOP2AP11388 1531 aaKnown RBP34.77■■■■□ 3.16
HDAC4-217ENST00000553145 LAMC3Q9Y6N6 1575 aa34.75■■■■□ 3.15
HDAC4-217ENST00000553145 CADPSQ9ULU8 1353 aa34.61■■■■□ 3.13
HDAC4-217ENST00000553145 KIF21AQ7Z4S6 1674 aa34.5■■■■□ 3.11
HDAC4-217ENST00000553145 PDS5BQ9NTI5 1447 aa34.49■■■■□ 3.11
HDAC4-217ENST00000553145 CUX2O14529 1486 aa34.48■■■■□ 3.11
HDAC4-217ENST00000553145 THOC2Q8NI27 1593 aaKnown RBP34.44■■■■□ 3.1
HDAC4-217ENST00000553145 CFTRP13569 1480 aa34.39■■■■□ 3.1
HDAC4-217ENST00000553145 CCDC88BA6NC98 1476 aa34.36■■■■□ 3.09
HDAC4-217ENST00000553145 FANCD2Q9BXW9 1451 aa34.23■■■■□ 3.07
HDAC4-217ENST00000553145 MRC2Q9UBG0 1479 aa34.2■■■■□ 3.06
HDAC4-217ENST00000553145 CEP164Q9UPV0 1460 aa34.2■■■■□ 3.06
HDAC4-217ENST00000553145 PRDM2Q13029 1718 aa34.11■■■■□ 3.05
HDAC4-217ENST00000553145 WDR62O43379 1518 aa34.1■■■■□ 3.05
HDAC4-217ENST00000553145 SUPT5HO00267 1087 aaKnown RBP34.01■■■■□ 3.03
HDAC4-217ENST00000553145 URB2Q14146 1524 aaKnown RBP33.94■■■■□ 3.02
HDAC4-217ENST00000553145 TOPBP1Q92547 1522 aa33.68■■■□□ 2.98
HDAC4-217ENST00000553145 DNAJC5Q9H3Z4 198 aa33.64■■■□□ 2.98
HDAC4-217ENST00000553145 DNMBPQ6XZF7 1577 aa33.61■■■□□ 2.97
HDAC4-217ENST00000553145 ABCC8Q09428 1581 aa33.59■■■□□ 2.97
HDAC4-217ENST00000553145 IFT140Q96RY7 1462 aa33.48■■■□□ 2.95
HDAC4-217ENST00000553145 ZNF608Q9ULD9 1512 aaPredicted RBP33.4■■■□□ 2.94
HDAC4-217ENST00000553145 CUX1P39880 1505 aa33.38■■■□□ 2.93
HDAC4-217ENST00000553145 POLA1P09884 1462 aaPredicted RBP33.38■■■□□ 2.93
HDAC4-217ENST00000553145 TARBP1Q13395 1621 aaKnown RBP33.34■■■□□ 2.93
HDAC4-217ENST00000553145 FGD5Q6ZNL6 1462 aa33.28■■■□□ 2.92
HDAC4-217ENST00000553145 EIF4G3O43432 1585 aaKnown RBP33.26■■■□□ 2.91
HDAC4-217ENST00000553145 RAD54L2Q9Y4B4 1467 aa33.25■■■□□ 2.91
HDAC4-217ENST00000553145 SOGA1O94964 1423 aa33.2■■■□□ 2.91
HDAC4-217ENST00000553145 AQRO60306 1485 aaKnown RBP eCLIP33.17■■■□□ 2.9
HDAC4-217ENST00000553145 TDRD9Q8NDG6 1382 aaKnown RBP33.08■■■□□ 2.89
HDAC4-217ENST00000553145 WRNQ14191 1432 aaPredicted RBP eCLIP33.06■■■□□ 2.88
HDAC4-217ENST00000553145 WDR97A6NE52 1622 aa33.04■■■□□ 2.88
HDAC4-217ENST00000553145 SYNJ1O43426 1573 aa33.04■■■□□ 2.88
HDAC4-217ENST00000553145 BIVM-ERCC5R4GMW8 1640 aa33.02■■■□□ 2.88
HDAC4-217ENST00000553145 TOP2BQ02880 1626 aa33.02■■■□□ 2.88
HDAC4-217ENST00000553145 OSCARQ8IYS5 282 aa32.98■■■□□ 2.87
HDAC4-217ENST00000553145 ABCA10Q8WWZ4 1543 aa32.92■■■□□ 2.86
HDAC4-217ENST00000553145 CHD1O14646 1710 aa32.87■■■□□ 2.85
HDAC4-217ENST00000553145 SNAPC4Q5SXM2 1469 aa32.86■■■□□ 2.85
HDAC4-217ENST00000553145 GRIN2BQ13224 1484 aa32.85■■■□□ 2.85
HDAC4-217ENST00000553145 ABCA5Q8WWZ7 1642 aa32.84■■■□□ 2.85
HDAC4-217ENST00000553145 GAPVD1Q14C86 1478 aa32.83■■■□□ 2.85
HDAC4-217ENST00000553145 PBRM1Q86U86 1689 aa32.81■■■□□ 2.84
HDAC4-217ENST00000553145 MAGI1Q96QZ7 1491 aaPredicted RBP32.77■■■□□ 2.84
HDAC4-217ENST00000553145 FBLN2P98095 1184 aa32.75■■■□□ 2.83
HDAC4-217ENST00000553145 SYNJ2O15056 1496 aa32.66■■■□□ 2.82
HDAC4-217ENST00000553145 CHMP7Q8WUX9 453 aaPredicted RBP32.62■■■□□ 2.81
HDAC4-217ENST00000553145 RIMBP3CA6NJZ7 1639 aa32.57■■■□□ 2.8
HDAC4-217ENST00000553145 RIMBP3BA6NNM3 1639 aa32.57■■■□□ 2.8
HDAC4-217ENST00000553145 RIMBP3Q9UFD9 1639 aa32.57■■■□□ 2.8
HDAC4-217ENST00000553145 ADAMTS12P58397 1594 aa32.55■■■□□ 2.8
HDAC4-217ENST00000553145 ARHGEF11O15085 1522 aa32.53■■■□□ 2.8
HDAC4-217ENST00000553145 ERICH3Q5RHP9 1530 aa32.51■■■□□ 2.8
HDAC4-217ENST00000553145 CLASP1Q7Z460 1538 aa32.51■■■□□ 2.8
HDAC4-217ENST00000553145 TRIM41Q8WV44 630 aa32.47■■■□□ 2.79
HDAC4-217ENST00000553145 GRIN2AQ12879 1464 aa32.44■■■□□ 2.78
HDAC4-217ENST00000553145 FHAD1B1AJZ9 1412 aa32.43■■■□□ 2.78
HDAC4-217ENST00000553145 KIF27Q86VH2 1401 aa32.34■■■□□ 2.77
HDAC4-217ENST00000553145 CEP170Q5SW79 1584 aa32.32■■■□□ 2.77
HDAC4-217ENST00000553145 NUP160Q12769 1436 aa32.31■■■□□ 2.76
HDAC4-217ENST00000553145 ARAP1Q96P48 1450 aa32.28■■■□□ 2.76
HDAC4-217ENST00000553145 IGF1RP08069 1367 aa32.27■■■□□ 2.76
HDAC4-217ENST00000553145 CYB5RLQ6IPT4 315 aa32.19■■■□□ 2.74
HDAC4-217ENST00000553145 CUL7Q14999 1698 aa32.18■■■□□ 2.74
HDAC4-217ENST00000553145 SHROOM2Q13796 1616 aa32.11■■■□□ 2.73
HDAC4-217ENST00000553145 RUSC2Q8N2Y8 1516 aa32.1■■■□□ 2.73
HDAC4-217ENST00000553145 ERCC6L2Q5T890 1561 aa32.09■■■□□ 2.73
HDAC4-217ENST00000553145 CARMIL1Q5VZK9 1371 aa32.06■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms