RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 NISCHQ9Y2I1 1504 aa34.17■■■■□ 3.06
PTCH1-226ENST00000553011 CCDC180Q9P1Z9 1646 aa30.35■■■□□ 2.45
PTCH1-226ENST00000553011 ABCC9O60706 1549 aa29.61■■■□□ 2.33
PTCH1-226ENST00000553011 DCAF8L2P0C7V8 631 aa28.51■■■□□ 2.15
PTCH1-226ENST00000553011 RB1CC1Q8TDY2 1594 aa28.5■■■□□ 2.15
PTCH1-226ENST00000553011 ZCCHC6Q5VYS8 1495 aaKnown RBP28.49■■■□□ 2.15
PTCH1-226ENST00000553011 NACADO15069 1562 aa28.48■■■□□ 2.15
PTCH1-226ENST00000553011 MYO15BQ96JP2 1530 aa28.31■■■□□ 2.12
PTCH1-226ENST00000553011 DCAF1Q9Y4B6 1507 aa28.24■■■□□ 2.11
PTCH1-226ENST00000553011 UNC13AQ9UPW8 1703 aa27.96■■■□□ 2.07
PTCH1-226ENST00000553011 SCRIBQ14160 1630 aa27.74■■■□□ 2.03
PTCH1-226ENST00000553011 PABPN1Q86U42 306 aaKnown RBP eCLIP27.67■■■□□ 2.02
PTCH1-226ENST00000553011 BICRAQ9NZM4 1560 aa27.67■■■□□ 2.02
PTCH1-226ENST00000553011 SHROOM4Q9ULL8 1493 aa27.29■■□□□ 1.96
PTCH1-226ENST00000553011 DNAJC5BQ9UF47 199 aa27.07■■□□□ 1.92
PTCH1-226ENST00000553011 EIF4G1Q04637 1599 aaKnown RBP26.91■■□□□ 1.9
PTCH1-226ENST00000553011 CC2D2AQ9P2K1 1620 aa26.79■■□□□ 1.88
PTCH1-226ENST00000553011 CECR2Q9BXF3 1484 aa26.64■■□□□ 1.86
PTCH1-226ENST00000553011 SMARCA4P51532 1647 aa26.52■■□□□ 1.84
PTCH1-226ENST00000553011 BAZ1AQ9NRL2 1556 aaPredicted RBP26.46■■□□□ 1.83
PTCH1-226ENST00000553011 MROH2BQ7Z745 1585 aa26.37■■□□□ 1.81
PTCH1-226ENST00000553011 ATAD2BQ9ULI0 1458 aa26.31■■□□□ 1.8
PTCH1-226ENST00000553011 SMARCA2P51531 1590 aa26.29■■□□□ 1.8
PTCH1-226ENST00000553011 NCAPD3P42695 1498 aa26.26■■□□□ 1.79
PTCH1-226ENST00000553011 PEG3Q9GZU2 1588 aa26.22■■□□□ 1.79
PTCH1-226ENST00000553011 HMGXB3Q12766 1538 aa26.16■■□□□ 1.78
PTCH1-226ENST00000553011 WIZO95785 1651 aa26.12■■□□□ 1.77
PTCH1-226ENST00000553011 BAZ1BQ9UIG0 1483 aaKnown RBP26.11■■□□□ 1.77
PTCH1-226ENST00000553011 RSF1Q96T23 1441 aaPredicted RBP26.07■■□□□ 1.76
PTCH1-226ENST00000553011 TOP2AP11388 1531 aaKnown RBP25.8■■□□□ 1.72
PTCH1-226ENST00000553011 NESP48681 1621 aa25.66■■□□□ 1.7
PTCH1-226ENST00000553011 LAMC3Q9Y6N6 1575 aa25.57■■□□□ 1.68
PTCH1-226ENST00000553011 SUPT5HO00267 1087 aaKnown RBP25.51■■□□□ 1.67
PTCH1-226ENST00000553011 CADPSQ9ULU8 1353 aa25.5■■□□□ 1.67
PTCH1-226ENST00000553011 CCDC88BA6NC98 1476 aa25.49■■□□□ 1.67
PTCH1-226ENST00000553011 ERCC6Q03468 1493 aa25.48■■□□□ 1.67
PTCH1-226ENST00000553011 KIF21AQ7Z4S6 1674 aa25.4■■□□□ 1.66
PTCH1-226ENST00000553011 CFTRP13569 1480 aa25.39■■□□□ 1.65
PTCH1-226ENST00000553011 PDS5BQ9NTI5 1447 aa25.37■■□□□ 1.65
PTCH1-226ENST00000553011 PRDM2Q13029 1718 aa25.29■■□□□ 1.64
PTCH1-226ENST00000553011 THOC2Q8NI27 1593 aaKnown RBP25.25■■□□□ 1.63
PTCH1-226ENST00000553011 FANCD2Q9BXW9 1451 aa25.23■■□□□ 1.63
PTCH1-226ENST00000553011 CEP164Q9UPV0 1460 aa25.19■■□□□ 1.62
PTCH1-226ENST00000553011 CUX2O14529 1486 aa25.15■■□□□ 1.62
PTCH1-226ENST00000553011 MRC2Q9UBG0 1479 aa25.13■■□□□ 1.61
PTCH1-226ENST00000553011 WDR62O43379 1518 aa25.05■■□□□ 1.6
PTCH1-226ENST00000553011 URB2Q14146 1524 aaKnown RBP25■■□□□ 1.59
PTCH1-226ENST00000553011 TOPBP1Q92547 1522 aa24.86■■□□□ 1.57
PTCH1-226ENST00000553011 DNMBPQ6XZF7 1577 aa24.84■■□□□ 1.57
PTCH1-226ENST00000553011 ABCC8Q09428 1581 aa24.8■■□□□ 1.56
PTCH1-226ENST00000553011 CUX1P39880 1505 aa24.72■■□□□ 1.55
PTCH1-226ENST00000553011 POLA1P09884 1462 aaPredicted RBP24.65■■□□□ 1.54
PTCH1-226ENST00000553011 IFT140Q96RY7 1462 aa24.64■■□□□ 1.54
PTCH1-226ENST00000553011 FGD5Q6ZNL6 1462 aa24.61■■□□□ 1.53
PTCH1-226ENST00000553011 TARBP1Q13395 1621 aaKnown RBP24.6■■□□□ 1.53
PTCH1-226ENST00000553011 WRNQ14191 1432 aaPredicted RBP eCLIP24.58■■□□□ 1.53
PTCH1-226ENST00000553011 ZNF608Q9ULD9 1512 aaPredicted RBP24.57■■□□□ 1.52
PTCH1-226ENST00000553011 SYNJ1O43426 1573 aa24.56■■□□□ 1.52
PTCH1-226ENST00000553011 RAD54L2Q9Y4B4 1467 aa24.56■■□□□ 1.52
PTCH1-226ENST00000553011 BIVM-ERCC5R4GMW8 1640 aa24.55■■□□□ 1.52
PTCH1-226ENST00000553011 TOP2BQ02880 1626 aa24.53■■□□□ 1.52
PTCH1-226ENST00000553011 SOGA1O94964 1423 aa24.53■■□□□ 1.52
PTCH1-226ENST00000553011 EIF4G3O43432 1585 aaKnown RBP24.49■■□□□ 1.51
PTCH1-226ENST00000553011 WDR97A6NE52 1622 aa24.45■■□□□ 1.5
PTCH1-226ENST00000553011 AQRO60306 1485 aaKnown RBP eCLIP24.43■■□□□ 1.5
PTCH1-226ENST00000553011 TDRD9Q8NDG6 1382 aaKnown RBP24.4■■□□□ 1.5
PTCH1-226ENST00000553011 ABCA10Q8WWZ4 1543 aa24.36■■□□□ 1.49
PTCH1-226ENST00000553011 ABCA5Q8WWZ7 1642 aa24.29■■□□□ 1.48
PTCH1-226ENST00000553011 PBRM1Q86U86 1689 aa24.27■■□□□ 1.48
PTCH1-226ENST00000553011 GAPVD1Q14C86 1478 aa24.26■■□□□ 1.47
PTCH1-226ENST00000553011 DNAJC5Q9H3Z4 198 aa24.25■■□□□ 1.47
PTCH1-226ENST00000553011 GRIN2BQ13224 1484 aa24.23■■□□□ 1.47
PTCH1-226ENST00000553011 SNAPC4Q5SXM2 1469 aa24.21■■□□□ 1.47
PTCH1-226ENST00000553011 CHD1O14646 1710 aa24.2■■□□□ 1.46
PTCH1-226ENST00000553011 MAGI1Q96QZ7 1491 aaPredicted RBP24.15■■□□□ 1.46
PTCH1-226ENST00000553011 OSCARQ8IYS5 282 aa24.11■■□□□ 1.45
PTCH1-226ENST00000553011 FBLN2P98095 1184 aa24.1■■□□□ 1.45
PTCH1-226ENST00000553011 ERICH3Q5RHP9 1530 aa24.06■■□□□ 1.44
PTCH1-226ENST00000553011 TRIM41Q8WV44 630 aa24.06■■□□□ 1.44
PTCH1-226ENST00000553011 SYNJ2O15056 1496 aa24.06■■□□□ 1.44
PTCH1-226ENST00000553011 ADAMTS12P58397 1594 aa24.05■■□□□ 1.44
PTCH1-226ENST00000553011 KIF27Q86VH2 1401 aa24.04■■□□□ 1.44
PTCH1-226ENST00000553011 CHMP7Q8WUX9 453 aaPredicted RBP24.03■■□□□ 1.44
PTCH1-226ENST00000553011 FHAD1B1AJZ9 1412 aa23.97■■□□□ 1.43
PTCH1-226ENST00000553011 IGF1RP08069 1367 aa23.93■■□□□ 1.42
PTCH1-226ENST00000553011 GRIN2AQ12879 1464 aa23.93■■□□□ 1.42
PTCH1-226ENST00000553011 RUSC2Q8N2Y8 1516 aa23.92■■□□□ 1.42
PTCH1-226ENST00000553011 CUL7Q14999 1698 aa23.89■■□□□ 1.42
PTCH1-226ENST00000553011 CLASP1Q7Z460 1538 aa23.88■■□□□ 1.41
PTCH1-226ENST00000553011 CHIC1Q5VXU3 224 aa23.86■■□□□ 1.41
PTCH1-226ENST00000553011 CEP170Q5SW79 1584 aa23.84■■□□□ 1.41
PTCH1-226ENST00000553011 NUP160Q12769 1436 aa23.81■■□□□ 1.4
PTCH1-226ENST00000553011 CARMIL1Q5VZK9 1371 aa23.79■■□□□ 1.4
PTCH1-226ENST00000553011 RIMBP3CA6NJZ7 1639 aa23.79■■□□□ 1.4
PTCH1-226ENST00000553011 RIMBP3BA6NNM3 1639 aa23.79■■□□□ 1.4
PTCH1-226ENST00000553011 RIMBP3Q9UFD9 1639 aa23.79■■□□□ 1.4
PTCH1-226ENST00000553011 ARHGEF11O15085 1522 aa23.77■■□□□ 1.4
PTCH1-226ENST00000553011 RAPGEF2Q9Y4G8 1499 aa23.67■■□□□ 1.38
PTCH1-226ENST00000553011 SHROOM2Q13796 1616 aa23.65■■□□□ 1.38
PTCH1-226ENST00000553011 EEA1Q15075 1411 aa23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms