RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 NISCHQ9Y2I1 1504 aa28.57■■■□□ 2.16
NEK3-204ENST00000552973 ABCC9O60706 1549 aa25.7■■□□□ 1.7
NEK3-204ENST00000552973 CCDC180Q9P1Z9 1646 aa25.47■■□□□ 1.67
NEK3-204ENST00000552973 DCAF8L2P0C7V8 631 aa24.36■■□□□ 1.49
NEK3-204ENST00000552973 RB1CC1Q8TDY2 1594 aa24.33■■□□□ 1.49
NEK3-204ENST00000552973 NACADO15069 1562 aa24.17■■□□□ 1.46
NEK3-204ENST00000552973 DNAJC5BQ9UF47 199 aa24.17■■□□□ 1.46
NEK3-204ENST00000552973 PABPN1Q86U42 306 aaKnown RBP eCLIP24.03■■□□□ 1.44
NEK3-204ENST00000552973 MYO15BQ96JP2 1530 aa23.79■■□□□ 1.4
NEK3-204ENST00000552973 UNC13AQ9UPW8 1703 aa23.68■■□□□ 1.38
NEK3-204ENST00000552973 ZCCHC6Q5VYS8 1495 aaKnown RBP23.66■■□□□ 1.38
NEK3-204ENST00000552973 BICRAQ9NZM4 1560 aa23.64■■□□□ 1.37
NEK3-204ENST00000552973 DCAF1Q9Y4B6 1507 aa23.51■■□□□ 1.35
NEK3-204ENST00000552973 SCRIBQ14160 1630 aa23.37■■□□□ 1.33
NEK3-204ENST00000552973 SHROOM4Q9ULL8 1493 aa23.24■■□□□ 1.31
NEK3-204ENST00000552973 CC2D2AQ9P2K1 1620 aa23.12■■□□□ 1.29
NEK3-204ENST00000552973 CECR2Q9BXF3 1484 aa23.11■■□□□ 1.29
NEK3-204ENST00000552973 EIF4G1Q04637 1599 aaKnown RBP23.08■■□□□ 1.29
NEK3-204ENST00000552973 NCAPD3P42695 1498 aa22.37■■□□□ 1.17
NEK3-204ENST00000552973 ATAD2BQ9ULI0 1458 aa22.34■■□□□ 1.17
NEK3-204ENST00000552973 SMARCA4P51532 1647 aa22.24■■□□□ 1.15
NEK3-204ENST00000552973 SMARCA2P51531 1590 aa22.2■■□□□ 1.14
NEK3-204ENST00000552973 ERCC6Q03468 1493 aa22.16■■□□□ 1.14
NEK3-204ENST00000552973 BAZ1AQ9NRL2 1556 aaPredicted RBP22.14■■□□□ 1.13
NEK3-204ENST00000552973 HMGXB3Q12766 1538 aa22.13■■□□□ 1.13
NEK3-204ENST00000552973 DNAJC5Q9H3Z4 198 aa22.12■■□□□ 1.13
NEK3-204ENST00000552973 BAZ1BQ9UIG0 1483 aaKnown RBP22.1■■□□□ 1.13
NEK3-204ENST00000552973 NESP48681 1621 aa22.07■■□□□ 1.12
NEK3-204ENST00000552973 MROH2BQ7Z745 1585 aa22.05■■□□□ 1.12
NEK3-204ENST00000552973 CUX2O14529 1486 aa22.03■■□□□ 1.12
NEK3-204ENST00000552973 PEG3Q9GZU2 1588 aa21.98■■□□□ 1.11
NEK3-204ENST00000552973 LAMC3Q9Y6N6 1575 aa21.8■■□□□ 1.08
NEK3-204ENST00000552973 PDS5BQ9NTI5 1447 aa21.76■■□□□ 1.07
NEK3-204ENST00000552973 WIZO95785 1651 aa21.75■■□□□ 1.07
NEK3-204ENST00000552973 CADPSQ9ULU8 1353 aa21.74■■□□□ 1.07
NEK3-204ENST00000552973 THOC2Q8NI27 1593 aaKnown RBP21.72■■□□□ 1.07
NEK3-204ENST00000552973 KIF21AQ7Z4S6 1674 aa21.66■■□□□ 1.06
NEK3-204ENST00000552973 RSF1Q96T23 1441 aaPredicted RBP21.63■■□□□ 1.05
NEK3-204ENST00000552973 MRC2Q9UBG0 1479 aa21.55■■□□□ 1.04
NEK3-204ENST00000552973 FANCD2Q9BXW9 1451 aa21.47■■□□□ 1.03
NEK3-204ENST00000552973 CEP164Q9UPV0 1460 aa21.47■■□□□ 1.03
NEK3-204ENST00000552973 CFTRP13569 1480 aa21.45■■□□□ 1.03
NEK3-204ENST00000552973 WDR62O43379 1518 aa21.45■■□□□ 1.02
NEK3-204ENST00000552973 TOP2AP11388 1531 aaKnown RBP21.45■■□□□ 1.02
NEK3-204ENST00000552973 CCDC88BA6NC98 1476 aa21.29■■□□□ 1
NEK3-204ENST00000552973 URB2Q14146 1524 aaKnown RBP21.29■■□□□ 1
NEK3-204ENST00000552973 TRIM41Q8WV44 630 aa21.27■■□□□ 1
NEK3-204ENST00000552973 OSCARQ8IYS5 282 aa21.17■□□□□ 0.98
NEK3-204ENST00000552973 ZNF608Q9ULD9 1512 aaPredicted RBP21.06■□□□□ 0.96
NEK3-204ENST00000552973 TOPBP1Q92547 1522 aa21.05■□□□□ 0.96
NEK3-204ENST00000552973 IFT140Q96RY7 1462 aa21.04■□□□□ 0.96
NEK3-204ENST00000552973 PRDM2Q13029 1718 aa21.02■□□□□ 0.96
NEK3-204ENST00000552973 ABCC8Q09428 1581 aa20.97■□□□□ 0.95
NEK3-204ENST00000552973 DNMBPQ6XZF7 1577 aa20.93■□□□□ 0.94
NEK3-204ENST00000552973 AQRO60306 1485 aaKnown RBP eCLIP20.9■□□□□ 0.945e-7■■■■■ 27.6
NEK3-204ENST00000552973 FBLN2P98095 1184 aa20.85■□□□□ 0.93
NEK3-204ENST00000552973 POLA1P09884 1462 aaPredicted RBP20.85■□□□□ 0.93
NEK3-204ENST00000552973 EIF4G3O43432 1585 aaKnown RBP20.85■□□□□ 0.93
NEK3-204ENST00000552973 SUPT5HO00267 1087 aaKnown RBP20.84■□□□□ 0.93
NEK3-204ENST00000552973 RAD54L2Q9Y4B4 1467 aa20.83■□□□□ 0.93
NEK3-204ENST00000552973 SOGA1O94964 1423 aa20.8■□□□□ 0.92
NEK3-204ENST00000552973 TARBP1Q13395 1621 aaKnown RBP20.8■□□□□ 0.92
NEK3-204ENST00000552973 TDRD9Q8NDG6 1382 aaKnown RBP20.8■□□□□ 0.92
NEK3-204ENST00000552973 RIMBP3CA6NJZ7 1639 aa20.77■□□□□ 0.92
NEK3-204ENST00000552973 RIMBP3BA6NNM3 1639 aa20.77■□□□□ 0.92
NEK3-204ENST00000552973 RIMBP3Q9UFD9 1639 aa20.77■□□□□ 0.92
NEK3-204ENST00000552973 ARHGEF11O15085 1522 aa20.73■□□□□ 0.91
NEK3-204ENST00000552973 CYB5RLQ6IPT4 315 aa20.73■□□□□ 0.91
NEK3-204ENST00000552973 FGD5Q6ZNL6 1462 aa20.73■□□□□ 0.91
NEK3-204ENST00000552973 CUX1P39880 1505 aa20.7■□□□□ 0.9
NEK3-204ENST00000552973 CHD1O14646 1710 aa20.64■□□□□ 0.9
NEK3-204ENST00000552973 SNAPC4Q5SXM2 1469 aa20.64■□□□□ 0.89
NEK3-204ENST00000552973 CHMP7Q8WUX9 453 aaPredicted RBP20.64■□□□□ 0.89
NEK3-204ENST00000552973 GRIN2BQ13224 1484 aa20.56■□□□□ 0.88
NEK3-204ENST00000552973 ARAP1Q96P48 1450 aa20.55■□□□□ 0.88
NEK3-204ENST00000552973 MAGI1Q96QZ7 1491 aaPredicted RBP20.53■□□□□ 0.88
NEK3-204ENST00000552973 GAPVD1Q14C86 1478 aa20.51■□□□□ 0.87
NEK3-204ENST00000552973 WDR97A6NE52 1622 aa20.51■□□□□ 0.87
NEK3-204ENST00000552973 TRHP20396 242 aaPredicted RBP20.5■□□□□ 0.87
NEK3-204ENST00000552973 SYNJ2O15056 1496 aa20.48■□□□□ 0.87
NEK3-204ENST00000552973 ABCA10Q8WWZ4 1543 aa20.46■□□□□ 0.87
NEK3-204ENST00000552973 CLASP1Q7Z460 1538 aa20.45■□□□□ 0.86
NEK3-204ENST00000552973 SYNJ1O43426 1573 aa20.45■□□□□ 0.86
NEK3-204ENST00000552973 WRNQ14191 1432 aaPredicted RBP eCLIP20.42■□□□□ 0.86
NEK3-204ENST00000552973 PBRM1Q86U86 1689 aa20.37■□□□□ 0.85
NEK3-204ENST00000552973 ABCA5Q8WWZ7 1642 aa20.37■□□□□ 0.85
NEK3-204ENST00000552973 TOP2BQ02880 1626 aa20.31■□□□□ 0.84
NEK3-204ENST00000552973 GRIN2AQ12879 1464 aa20.3■□□□□ 0.84
NEK3-204ENST00000552973 BIVM-ERCC5R4GMW8 1640 aa20.27■□□□□ 0.84
NEK3-204ENST00000552973 FHAD1B1AJZ9 1412 aa20.25■□□□□ 0.83
NEK3-204ENST00000552973 ADAMTS12P58397 1594 aa20.23■□□□□ 0.83
NEK3-204ENST00000552973 NUP160Q12769 1436 aa20.23■□□□□ 0.83
NEK3-204ENST00000552973 ERCC6L2Q5T890 1561 aa20.21■□□□□ 0.83
NEK3-204ENST00000552973 CEP170Q5SW79 1584 aa20.21■□□□□ 0.83
NEK3-204ENST00000552973 ERICH3Q5RHP9 1530 aa20.17■□□□□ 0.82
NEK3-204ENST00000552973 JPH4Q96JJ6 628 aa20.12■□□□□ 0.81
NEK3-204ENST00000552973 PRG4Q92954 1404 aaPredicted RBP20.09■□□□□ 0.81
NEK3-204ENST00000552973 SHROOM2Q13796 1616 aa20.05■□□□□ 0.8
NEK3-204ENST00000552973 IGF1RP08069 1367 aa20.04■□□□□ 0.8
NEK3-204ENST00000552973 KIF27Q86VH2 1401 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms