RNA–Protein interactions for RNA: ENST00000552917.1

RFX4-212, Transcript of regulatory factor X4, humanhuman

TSL 4

Gene RFX4, Length 594 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4-212ENST00000552917 NISCHQ9Y2I1 1504 aa29.99■■■□□ 2.39
RFX4-212ENST00000552917 CCDC180Q9P1Z9 1646 aa26.68■■□□□ 1.86
RFX4-212ENST00000552917 ABCC9O60706 1549 aa26.39■■□□□ 1.81
RFX4-212ENST00000552917 RB1CC1Q8TDY2 1594 aa25.27■■□□□ 1.64
RFX4-212ENST00000552917 DCAF8L2P0C7V8 631 aa25.22■■□□□ 1.63
RFX4-212ENST00000552917 NACADO15069 1562 aa25.2■■□□□ 1.62
RFX4-212ENST00000552917 MYO15BQ96JP2 1530 aa24.99■■□□□ 1.59
RFX4-212ENST00000552917 ZCCHC6Q5VYS8 1495 aaKnown RBP24.93■■□□□ 1.58
RFX4-212ENST00000552917 DCAF1Q9Y4B6 1507 aa24.81■■□□□ 1.56
RFX4-212ENST00000552917 PABPN1Q86U42 306 aaKnown RBP eCLIP24.67■■□□□ 1.54
RFX4-212ENST00000552917 UNC13AQ9UPW8 1703 aa24.57■■□□□ 1.52
RFX4-212ENST00000552917 BICRAQ9NZM4 1560 aa24.49■■□□□ 1.51
RFX4-212ENST00000552917 DNAJC5BQ9UF47 199 aa24.44■■□□□ 1.5
RFX4-212ENST00000552917 SCRIBQ14160 1630 aa24.35■■□□□ 1.49
RFX4-212ENST00000552917 SHROOM4Q9ULL8 1493 aa24.26■■□□□ 1.47
RFX4-212ENST00000552917 EIF4G1Q04637 1599 aaKnown RBP23.87■■□□□ 1.41
RFX4-212ENST00000552917 CC2D2AQ9P2K1 1620 aa23.81■■□□□ 1.4
RFX4-212ENST00000552917 CECR2Q9BXF3 1484 aa23.74■■□□□ 1.39
RFX4-212ENST00000552917 NCAPD3P42695 1498 aa23.29■■□□□ 1.32
RFX4-212ENST00000552917 SMARCA4P51532 1647 aa23.28■■□□□ 1.32
RFX4-212ENST00000552917 ATAD2BQ9ULI0 1458 aa23.26■■□□□ 1.31
RFX4-212ENST00000552917 BAZ1AQ9NRL2 1556 aaPredicted RBP23.25■■□□□ 1.31
RFX4-212ENST00000552917 SMARCA2P51531 1590 aa23.2■■□□□ 1.3
RFX4-212ENST00000552917 HMGXB3Q12766 1538 aa23.11■■□□□ 1.29
RFX4-212ENST00000552917 MROH2BQ7Z745 1585 aa23.1■■□□□ 1.29
RFX4-212ENST00000552917 PEG3Q9GZU2 1588 aa23.06■■□□□ 1.28
RFX4-212ENST00000552917 BAZ1BQ9UIG0 1483 aaKnown RBP23.05■■□□□ 1.28
RFX4-212ENST00000552917 RSF1Q96T23 1441 aaPredicted RBP22.81■■□□□ 1.24
RFX4-212ENST00000552917 WIZO95785 1651 aa22.8■■□□□ 1.24
RFX4-212ENST00000552917 ERCC6Q03468 1493 aa22.78■■□□□ 1.24
RFX4-212ENST00000552917 NESP48681 1621 aa22.75■■□□□ 1.23
RFX4-212ENST00000552917 LAMC3Q9Y6N6 1575 aa22.66■■□□□ 1.22
RFX4-212ENST00000552917 CADPSQ9ULU8 1353 aa22.62■■□□□ 1.21
RFX4-212ENST00000552917 CUX2O14529 1486 aa22.6■■□□□ 1.21
RFX4-212ENST00000552917 TOP2AP11388 1531 aaKnown RBP22.58■■□□□ 1.21
RFX4-212ENST00000552917 PDS5BQ9NTI5 1447 aa22.57■■□□□ 1.2
RFX4-212ENST00000552917 CFTRP13569 1480 aa22.41■■□□□ 1.18
RFX4-212ENST00000552917 THOC2Q8NI27 1593 aaKnown RBP22.41■■□□□ 1.18
RFX4-212ENST00000552917 KIF21AQ7Z4S6 1674 aa22.4■■□□□ 1.18
RFX4-212ENST00000552917 CCDC88BA6NC98 1476 aa22.34■■□□□ 1.17
RFX4-212ENST00000552917 FANCD2Q9BXW9 1451 aa22.33■■□□□ 1.16
RFX4-212ENST00000552917 MRC2Q9UBG0 1479 aa22.32■■□□□ 1.16
RFX4-212ENST00000552917 CEP164Q9UPV0 1460 aa22.31■■□□□ 1.16
RFX4-212ENST00000552917 WDR62O43379 1518 aa22.23■■□□□ 1.15
RFX4-212ENST00000552917 DNAJC5Q9H3Z4 198 aa22.19■■□□□ 1.14
RFX4-212ENST00000552917 SUPT5HO00267 1087 aaKnown RBP22.1■■□□□ 1.13
RFX4-212ENST00000552917 URB2Q14146 1524 aaKnown RBP22.1■■□□□ 1.13
RFX4-212ENST00000552917 PRDM2Q13029 1718 aa22.07■■□□□ 1.12
RFX4-212ENST00000552917 ABCC8Q09428 1581 aa21.95■■□□□ 1.1
RFX4-212ENST00000552917 TOPBP1Q92547 1522 aa21.93■■□□□ 1.1
RFX4-212ENST00000552917 DNMBPQ6XZF7 1577 aa21.87■■□□□ 1.09
RFX4-212ENST00000552917 IFT140Q96RY7 1462 aa21.86■■□□□ 1.09
RFX4-212ENST00000552917 ZNF608Q9ULD9 1512 aaPredicted RBP21.77■■□□□ 1.08
RFX4-212ENST00000552917 POLA1P09884 1462 aaPredicted RBP21.74■■□□□ 1.07
RFX4-212ENST00000552917 OSCARQ8IYS5 282 aa21.68■■□□□ 1.06
RFX4-212ENST00000552917 CUX1P39880 1505 aa21.68■■□□□ 1.06
RFX4-212ENST00000552917 TARBP1Q13395 1621 aaKnown RBP21.68■■□□□ 1.06
RFX4-212ENST00000552917 SOGA1O94964 1423 aa21.67■■□□□ 1.06
RFX4-212ENST00000552917 FGD5Q6ZNL6 1462 aa21.65■■□□□ 1.06
RFX4-212ENST00000552917 RAD54L2Q9Y4B4 1467 aa21.65■■□□□ 1.06
RFX4-212ENST00000552917 AQRO60306 1485 aaKnown RBP eCLIP21.64■■□□□ 1.05
RFX4-212ENST00000552917 EIF4G3O43432 1585 aaKnown RBP21.62■■□□□ 1.05
RFX4-212ENST00000552917 TDRD9Q8NDG6 1382 aaKnown RBP21.59■■□□□ 1.05
RFX4-212ENST00000552917 WRNQ14191 1432 aaPredicted RBP eCLIP21.5■■□□□ 1.03
RFX4-212ENST00000552917 WDR97A6NE52 1622 aa21.5■■□□□ 1.03
RFX4-212ENST00000552917 FBLN2P98095 1184 aa21.46■■□□□ 1.03
RFX4-212ENST00000552917 GRIN2BQ13224 1484 aa21.44■■□□□ 1.02
RFX4-212ENST00000552917 ABCA10Q8WWZ4 1543 aa21.44■■□□□ 1.02
RFX4-212ENST00000552917 TOP2BQ02880 1626 aa21.43■■□□□ 1.02
RFX4-212ENST00000552917 SNAPC4Q5SXM2 1469 aa21.41■■□□□ 1.02
RFX4-212ENST00000552917 SYNJ1O43426 1573 aa21.4■■□□□ 1.02
RFX4-212ENST00000552917 GAPVD1Q14C86 1478 aa21.4■■□□□ 1.02
RFX4-212ENST00000552917 BIVM-ERCC5R4GMW8 1640 aa21.4■■□□□ 1.02
RFX4-212ENST00000552917 MAGI1Q96QZ7 1491 aaPredicted RBP21.39■■□□□ 1.01
RFX4-212ENST00000552917 CHMP7Q8WUX9 453 aaPredicted RBP21.37■■□□□ 1.01
RFX4-212ENST00000552917 TRIM41Q8WV44 630 aa21.37■■□□□ 1.01
RFX4-212ENST00000552917 CHD1O14646 1710 aa21.35■■□□□ 1.01
RFX4-212ENST00000552917 ABCA5Q8WWZ7 1642 aa21.32■■□□□ 1
RFX4-212ENST00000552917 SYNJ2O15056 1496 aa21.32■■□□□ 1
RFX4-212ENST00000552917 ARHGEF11O15085 1522 aa21.26■□□□□ 0.99
RFX4-212ENST00000552917 PBRM1Q86U86 1689 aa21.26■□□□□ 0.99
RFX4-212ENST00000552917 RIMBP3CA6NJZ7 1639 aa21.25■□□□□ 0.99
RFX4-212ENST00000552917 RIMBP3BA6NNM3 1639 aa21.25■□□□□ 0.99
RFX4-212ENST00000552917 RIMBP3Q9UFD9 1639 aa21.25■□□□□ 0.99
RFX4-212ENST00000552917 CLASP1Q7Z460 1538 aa21.18■□□□□ 0.98
RFX4-212ENST00000552917 ERICH3Q5RHP9 1530 aa21.17■□□□□ 0.98
RFX4-212ENST00000552917 FHAD1B1AJZ9 1412 aa21.16■□□□□ 0.98
RFX4-212ENST00000552917 GRIN2AQ12879 1464 aa21.14■□□□□ 0.98
RFX4-212ENST00000552917 CYB5RLQ6IPT4 315 aa21.14■□□□□ 0.97
RFX4-212ENST00000552917 ADAMTS12P58397 1594 aa21.14■□□□□ 0.97
RFX4-212ENST00000552917 ARAP1Q96P48 1450 aa21.08■□□□□ 0.97
RFX4-212ENST00000552917 KIF27Q86VH2 1401 aa21.08■□□□□ 0.97
RFX4-212ENST00000552917 NUP160Q12769 1436 aa21.07■□□□□ 0.96
RFX4-212ENST00000552917 IGF1RP08069 1367 aa21.03■□□□□ 0.96
RFX4-212ENST00000552917 CEP170Q5SW79 1584 aa21.02■□□□□ 0.95
RFX4-212ENST00000552917 CARMIL1Q5VZK9 1371 aa20.9■□□□□ 0.94
RFX4-212ENST00000552917 JPH4Q96JJ6 628 aa20.9■□□□□ 0.94
RFX4-212ENST00000552917 CUL7Q14999 1698 aa20.89■□□□□ 0.94
RFX4-212ENST00000552917 SHROOM2Q13796 1616 aa20.87■□□□□ 0.93
RFX4-212ENST00000552917 ERCC6L2Q5T890 1561 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms