RNA–Protein interactions for RNA: ENST00000552875.2

PRKCH-203, Transcript of protein kinase C eta, humanhuman

TSL 4

Gene PRKCH, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-203ENST00000552875 NISCHQ9Y2I1 1504 aa22.72■■□□□ 1.23
PRKCH-203ENST00000552875 ABCC9O60706 1549 aa21.67■■□□□ 1.06
PRKCH-203ENST00000552875 DNAJC5BQ9UF47 199 aa21.09■□□□□ 0.97
PRKCH-203ENST00000552875 CCDC180Q9P1Z9 1646 aa20.75■□□□□ 0.91
PRKCH-203ENST00000552875 RB1CC1Q8TDY2 1594 aa20.27■□□□□ 0.84
PRKCH-203ENST00000552875 DNAJC5Q9H3Z4 198 aa20.17■□□□□ 0.82
PRKCH-203ENST00000552875 PABPN1Q86U42 306 aaKnown RBP eCLIP20.06■□□□□ 0.8
PRKCH-203ENST00000552875 NACADO15069 1562 aa19.91■□□□□ 0.78
PRKCH-203ENST00000552875 DCAF8L2P0C7V8 631 aa19.7■□□□□ 0.74
PRKCH-203ENST00000552875 CECR2Q9BXF3 1484 aa19.67■□□□□ 0.74
PRKCH-203ENST00000552875 BICRAQ9NZM4 1560 aa19.57■□□□□ 0.72
PRKCH-203ENST00000552875 UNC13AQ9UPW8 1703 aa19.56■□□□□ 0.72
PRKCH-203ENST00000552875 CC2D2AQ9P2K1 1620 aa19.5■□□□□ 0.71
PRKCH-203ENST00000552875 SHROOM4Q9ULL8 1493 aa19.41■□□□□ 0.7
PRKCH-203ENST00000552875 MYO15BQ96JP2 1530 aa19.35■□□□□ 0.69
PRKCH-203ENST00000552875 EIF4G1Q04637 1599 aaKnown RBP19.26■□□□□ 0.67
PRKCH-203ENST00000552875 CUX2O14529 1486 aa19.14■□□□□ 0.65
PRKCH-203ENST00000552875 TRIM41Q8WV44 630 aa18.92■□□□□ 0.62
PRKCH-203ENST00000552875 ERCC6Q03468 1493 aa18.89■□□□□ 0.61
PRKCH-203ENST00000552875 SCRIBQ14160 1630 aa18.86■□□□□ 0.61
PRKCH-203ENST00000552875 DCAF1Q9Y4B6 1507 aa18.74■□□□□ 0.59
PRKCH-203ENST00000552875 ZCCHC6Q5VYS8 1495 aaKnown RBP18.61■□□□□ 0.57
PRKCH-203ENST00000552875 NCAPD3P42695 1498 aa18.4■□□□□ 0.54
PRKCH-203ENST00000552875 NESP48681 1621 aa18.31■□□□□ 0.52
PRKCH-203ENST00000552875 THOC2Q8NI27 1593 aaKnown RBP18.29■□□□□ 0.52
PRKCH-203ENST00000552875 ATAD2BQ9ULI0 1458 aa18.18■□□□□ 0.5
PRKCH-203ENST00000552875 OSCARQ8IYS5 282 aa18.17■□□□□ 0.5
PRKCH-203ENST00000552875 SMARCA2P51531 1590 aa18.16■□□□□ 0.5
PRKCH-203ENST00000552875 HMGXB3Q12766 1538 aa18.15■□□□□ 0.5
PRKCH-203ENST00000552875 AEBP2Q6ZN18 517 aaPredicted RBP18.14■□□□□ 0.49
PRKCH-203ENST00000552875 PDS5BQ9NTI5 1447 aa18.13■□□□□ 0.49
PRKCH-203ENST00000552875 LAMC3Q9Y6N6 1575 aa18.12■□□□□ 0.49
PRKCH-203ENST00000552875 BAZ1AQ9NRL2 1556 aaPredicted RBP18.04■□□□□ 0.48
PRKCH-203ENST00000552875 BAZ1BQ9UIG0 1483 aaKnown RBP18■□□□□ 0.47
PRKCH-203ENST00000552875 KIF21AQ7Z4S6 1674 aa17.98■□□□□ 0.47
PRKCH-203ENST00000552875 MRC2Q9UBG0 1479 aa17.95■□□□□ 0.46
PRKCH-203ENST00000552875 TRHP20396 242 aaPredicted RBP17.93■□□□□ 0.46
PRKCH-203ENST00000552875 WDR62O43379 1518 aa17.9■□□□□ 0.46
PRKCH-203ENST00000552875 SMARCA4P51532 1647 aa17.87■□□□□ 0.45
PRKCH-203ENST00000552875 RIMBP3CA6NJZ7 1639 aa17.86■□□□□ 0.45
PRKCH-203ENST00000552875 RIMBP3BA6NNM3 1639 aa17.86■□□□□ 0.45
PRKCH-203ENST00000552875 RIMBP3Q9UFD9 1639 aa17.86■□□□□ 0.45
PRKCH-203ENST00000552875 CADPSQ9ULU8 1353 aa17.82■□□□□ 0.44
PRKCH-203ENST00000552875 CYB5RLQ6IPT4 315 aa17.77■□□□□ 0.44
PRKCH-203ENST00000552875 ARHGEF11O15085 1522 aa17.76■□□□□ 0.43
PRKCH-203ENST00000552875 PEG3Q9GZU2 1588 aa17.74■□□□□ 0.43
PRKCH-203ENST00000552875 CEP164Q9UPV0 1460 aa17.71■□□□□ 0.43
PRKCH-203ENST00000552875 FANCD2Q9BXW9 1451 aa17.59■□□□□ 0.41
PRKCH-203ENST00000552875 ARAP1Q96P48 1450 aa17.5■□□□□ 0.39
PRKCH-203ENST00000552875 RSF1Q96T23 1441 aaPredicted RBP17.44■□□□□ 0.38
PRKCH-203ENST00000552875 MROH2BQ7Z745 1585 aa17.44■□□□□ 0.38
PRKCH-203ENST00000552875 URB2Q14146 1524 aaKnown RBP17.43■□□□□ 0.38
PRKCH-203ENST00000552875 IFT140Q96RY7 1462 aa17.41■□□□□ 0.38
PRKCH-203ENST00000552875 CFTRP13569 1480 aa17.39■□□□□ 0.37
PRKCH-203ENST00000552875 ILDR1Q86SU0 546 aaPredicted RBP17.38■□□□□ 0.37
PRKCH-203ENST00000552875 ZNF608Q9ULD9 1512 aaPredicted RBP17.37■□□□□ 0.37
PRKCH-203ENST00000552875 FBLN2P98095 1184 aa17.32■□□□□ 0.36
PRKCH-203ENST00000552875 EIF4G3O43432 1585 aaKnown RBP17.22■□□□□ 0.35
PRKCH-203ENST00000552875 CHD1O14646 1710 aa17.19■□□□□ 0.34
PRKCH-203ENST00000552875 WIZO95785 1651 aa17.14■□□□□ 0.33
PRKCH-203ENST00000552875 ABCC8Q09428 1581 aa17.14■□□□□ 0.33
PRKCH-203ENST00000552875 AQRO60306 1485 aaKnown RBP eCLIP17.13■□□□□ 0.33
PRKCH-203ENST00000552875 TOPBP1Q92547 1522 aa17.11■□□□□ 0.33
PRKCH-203ENST00000552875 CHMP7Q8WUX9 453 aaPredicted RBP17.06■□□□□ 0.32
PRKCH-203ENST00000552875 CLASP1Q7Z460 1538 aa17.05■□□□□ 0.32
PRKCH-203ENST00000552875 SYNJ1O43426 1573 aa17.04■□□□□ 0.32
PRKCH-203ENST00000552875 GAPVD1Q14C86 1478 aa17.03■□□□□ 0.32
PRKCH-203ENST00000552875 TARBP1Q13395 1621 aaKnown RBP16.98■□□□□ 0.31
PRKCH-203ENST00000552875 PRDM2Q13029 1718 aa16.98■□□□□ 0.31
PRKCH-203ENST00000552875 DNMBPQ6XZF7 1577 aa16.98■□□□□ 0.31
PRKCH-203ENST00000552875 TOP2AP11388 1531 aaKnown RBP16.95■□□□□ 0.3
PRKCH-203ENST00000552875 SNAPC4Q5SXM2 1469 aa16.94■□□□□ 0.3
PRKCH-203ENST00000552875 KDM4FA0A1W2PPD8 638 aa16.92■□□□□ 0.3
PRKCH-203ENST00000552875 TDRD9Q8NDG6 1382 aaKnown RBP16.91■□□□□ 0.3
PRKCH-203ENST00000552875 MAGI1Q96QZ7 1491 aaPredicted RBP16.91■□□□□ 0.3
PRKCH-203ENST00000552875 POLA1P09884 1462 aaPredicted RBP16.89■□□□□ 0.29
PRKCH-203ENST00000552875 SYNJ2O15056 1496 aa16.86■□□□□ 0.29
PRKCH-203ENST00000552875 SOGA1O94964 1423 aa16.86■□□□□ 0.29
PRKCH-203ENST00000552875 WDR97A6NE52 1622 aa16.85■□□□□ 0.29
PRKCH-203ENST00000552875 RAD54L2Q9Y4B4 1467 aa16.82■□□□□ 0.28
PRKCH-203ENST00000552875 GRIN2BQ13224 1484 aa16.81■□□□□ 0.28
PRKCH-203ENST00000552875 CCDC88BA6NC98 1476 aa16.76■□□□□ 0.27
PRKCH-203ENST00000552875 FAM69CQ0P6D2 419 aa16.76■□□□□ 0.27
PRKCH-203ENST00000552875 FBXO41Q8TF61 875 aa16.73■□□□□ 0.27
PRKCH-203ENST00000552875 ERCC6L2Q5T890 1561 aa16.72■□□□□ 0.27
PRKCH-203ENST00000552875 KIF13AQ9H1H9 1805 aa16.72■□□□□ 0.27
PRKCH-203ENST00000552875 NPM1P06748 294 aaKnown RBP eCLIP16.7■□□□□ 0.26
PRKCH-203ENST00000552875 KDM6BO15054 1643 aa16.69■□□□□ 0.26
PRKCH-203ENST00000552875 ABCC10Q5T3U5 1492 aa16.68■□□□□ 0.26
PRKCH-203ENST00000552875 CHIC1Q5VXU3 224 aa16.65■□□□□ 0.26
PRKCH-203ENST00000552875 FGD5Q6ZNL6 1462 aa16.65■□□□□ 0.26
PRKCH-203ENST00000552875 CEP170Q5SW79 1584 aa16.62■□□□□ 0.25
PRKCH-203ENST00000552875 HECW2Q9P2P5 1572 aa16.62■□□□□ 0.25
PRKCH-203ENST00000552875 ADGRL1O94910 1474 aa16.58■□□□□ 0.24
PRKCH-203ENST00000552875 GRIN2AQ12879 1464 aa16.57■□□□□ 0.24
PRKCH-203ENST00000552875 MAPKBP1O60336 1514 aa16.55■□□□□ 0.24
PRKCH-203ENST00000552875 LMTK3Q96Q04 1460 aa16.55■□□□□ 0.24
PRKCH-203ENST00000552875 DIP2BQ9P265 1576 aa16.54■□□□□ 0.24
PRKCH-203ENST00000552875 NUP160Q12769 1436 aa16.53■□□□□ 0.24
PRKCH-203ENST00000552875 PBRM1Q86U86 1689 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms