RNA–Protein interactions for RNA: ENST00000552829.2

SUPT16H-202, Transcript of SPT16 homolog, facilitates chromatin remodeling subunit, humanhuman

TSL 2

Gene SUPT16H, Length 669 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUPT16H-202ENST00000552829 NISCHQ9Y2I1 1504 aa29.45■■■□□ 2.3
SUPT16H-202ENST00000552829 ABCC9O60706 1549 aa27.14■■□□□ 1.94
SUPT16H-202ENST00000552829 CCDC180Q9P1Z9 1646 aa26.66■■□□□ 1.86
SUPT16H-202ENST00000552829 DNAJC5BQ9UF47 199 aa26.05■■□□□ 1.76
SUPT16H-202ENST00000552829 RB1CC1Q8TDY2 1594 aa25.61■■□□□ 1.69
SUPT16H-202ENST00000552829 NACADO15069 1562 aa25.34■■□□□ 1.65
SUPT16H-202ENST00000552829 PABPN1Q86U42 306 aaKnown RBP eCLIP25.18■■□□□ 1.62
SUPT16H-202ENST00000552829 UNC13AQ9UPW8 1703 aa25.09■■□□□ 1.61
SUPT16H-202ENST00000552829 BICRAQ9NZM4 1560 aa24.97■■□□□ 1.59
SUPT16H-202ENST00000552829 DCAF8L2P0C7V8 631 aa24.95■■□□□ 1.58
SUPT16H-202ENST00000552829 MYO15BQ96JP2 1530 aa24.86■■□□□ 1.57
SUPT16H-202ENST00000552829 SHROOM4Q9ULL8 1493 aa24.54■■□□□ 1.52
SUPT16H-202ENST00000552829 CC2D2AQ9P2K1 1620 aa24.53■■□□□ 1.52
SUPT16H-202ENST00000552829 CECR2Q9BXF3 1484 aa24.52■■□□□ 1.52
SUPT16H-202ENST00000552829 EIF4G1Q04637 1599 aaKnown RBP24.33■■□□□ 1.49
SUPT16H-202ENST00000552829 DCAF1Q9Y4B6 1507 aa24.33■■□□□ 1.49
SUPT16H-202ENST00000552829 DNAJC5Q9H3Z4 198 aa24.32■■□□□ 1.48
SUPT16H-202ENST00000552829 ZCCHC6Q5VYS8 1495 aaKnown RBP24.28■■□□□ 1.48
SUPT16H-202ENST00000552829 SCRIBQ14160 1630 aa24.19■■□□□ 1.46
SUPT16H-202ENST00000552829 CUX2O14529 1486 aa23.66■■□□□ 1.38
SUPT16H-202ENST00000552829 CHIC1Q5VXU3 224 aa23.52■■□□□ 1.36
SUPT16H-202ENST00000552829 NCAPD3P42695 1498 aa23.43■■□□□ 1.34
SUPT16H-202ENST00000552829 ERCC6Q03468 1493 aa23.43■■□□□ 1.34
SUPT16H-202ENST00000552829 AEBP2Q6ZN18 517 aaPredicted RBP23.4■■□□□ 1.34
SUPT16H-202ENST00000552829 ATAD2BQ9ULI0 1458 aa23.25■■□□□ 1.31
SUPT16H-202ENST00000552829 NESP48681 1621 aa23.19■■□□□ 1.3
SUPT16H-202ENST00000552829 HMGXB3Q12766 1538 aa23.18■■□□□ 1.3
SUPT16H-202ENST00000552829 SMARCA2P51531 1590 aa23.13■■□□□ 1.29
SUPT16H-202ENST00000552829 THOC2Q8NI27 1593 aaKnown RBP23.08■■□□□ 1.29
SUPT16H-202ENST00000552829 SMARCA4P51532 1647 aa23.08■■□□□ 1.28
SUPT16H-202ENST00000552829 LAMC3Q9Y6N6 1575 aa22.94■■□□□ 1.26
SUPT16H-202ENST00000552829 BAZ1BQ9UIG0 1483 aaKnown RBP22.94■■□□□ 1.26
SUPT16H-202ENST00000552829 PEG3Q9GZU2 1588 aa22.9■■□□□ 1.26
SUPT16H-202ENST00000552829 TRIM41Q8WV44 630 aa22.89■■□□□ 1.25
SUPT16H-202ENST00000552829 KIF21AQ7Z4S6 1674 aa22.87■■□□□ 1.25
SUPT16H-202ENST00000552829 BAZ1AQ9NRL2 1556 aaPredicted RBP22.86■■□□□ 1.25
SUPT16H-202ENST00000552829 PDS5BQ9NTI5 1447 aa22.81■■□□□ 1.24
SUPT16H-202ENST00000552829 MROH2BQ7Z745 1585 aa22.67■■□□□ 1.22
SUPT16H-202ENST00000552829 CADPSQ9ULU8 1353 aa22.66■■□□□ 1.22
SUPT16H-202ENST00000552829 MRC2Q9UBG0 1479 aa22.66■■□□□ 1.22
SUPT16H-202ENST00000552829 WDR62O43379 1518 aa22.63■■□□□ 1.21
SUPT16H-202ENST00000552829 OSCARQ8IYS5 282 aa22.47■■□□□ 1.19
SUPT16H-202ENST00000552829 CEP164Q9UPV0 1460 aa22.42■■□□□ 1.18
SUPT16H-202ENST00000552829 FANCD2Q9BXW9 1451 aa22.37■■□□□ 1.17
SUPT16H-202ENST00000552829 WIZO95785 1651 aa22.36■■□□□ 1.17
SUPT16H-202ENST00000552829 CFTRP13569 1480 aa22.29■■□□□ 1.16
SUPT16H-202ENST00000552829 URB2Q14146 1524 aaKnown RBP22.26■■□□□ 1.15
SUPT16H-202ENST00000552829 RIMBP3CA6NJZ7 1639 aa22.24■■□□□ 1.15
SUPT16H-202ENST00000552829 RIMBP3BA6NNM3 1639 aa22.24■■□□□ 1.15
SUPT16H-202ENST00000552829 RIMBP3Q9UFD9 1639 aa22.24■■□□□ 1.15
SUPT16H-202ENST00000552829 ARHGEF11O15085 1522 aa22.11■■□□□ 1.13
SUPT16H-202ENST00000552829 ZNF608Q9ULD9 1512 aaPredicted RBP22.06■■□□□ 1.12
SUPT16H-202ENST00000552829 TOP2AP11388 1531 aaKnown RBP22.04■■□□□ 1.12
SUPT16H-202ENST00000552829 IFT140Q96RY7 1462 aa22.03■■□□□ 1.12
SUPT16H-202ENST00000552829 RSF1Q96T23 1441 aaPredicted RBP22.02■■□□□ 1.12
SUPT16H-202ENST00000552829 PRDM2Q13029 1718 aa22.02■■□□□ 1.12
SUPT16H-202ENST00000552829 CYB5RLQ6IPT4 315 aa21.95■■□□□ 1.1
SUPT16H-202ENST00000552829 TOPBP1Q92547 1522 aa21.9■■□□□ 1.1
SUPT16H-202ENST00000552829 EIF4G3O43432 1585 aaKnown RBP21.88■■□□□ 1.09
SUPT16H-202ENST00000552829 ARAP1Q96P48 1450 aa21.88■■□□□ 1.09
SUPT16H-202ENST00000552829 CHD1O14646 1710 aa21.84■■□□□ 1.09
SUPT16H-202ENST00000552829 TRHP20396 242 aaPredicted RBP21.83■■□□□ 1.09
SUPT16H-202ENST00000552829 ABCC8Q09428 1581 aa21.82■■□□□ 1.08
SUPT16H-202ENST00000552829 CCDC88BA6NC98 1476 aa21.81■■□□□ 1.08
SUPT16H-202ENST00000552829 TARBP1Q13395 1621 aaKnown RBP21.78■■□□□ 1.08
SUPT16H-202ENST00000552829 AQRO60306 1485 aaKnown RBP eCLIP21.77■■□□□ 1.08
SUPT16H-202ENST00000552829 DNMBPQ6XZF7 1577 aa21.77■■□□□ 1.08
SUPT16H-202ENST00000552829 FBLN2P98095 1184 aa21.65■■□□□ 1.06
SUPT16H-202ENST00000552829 POLA1P09884 1462 aaPredicted RBP21.64■■□□□ 1.06
SUPT16H-202ENST00000552829 CLASP1Q7Z460 1538 aa21.61■■□□□ 1.05
SUPT16H-202ENST00000552829 RAD54L2Q9Y4B4 1467 aa21.57■■□□□ 1.04
SUPT16H-202ENST00000552829 TDRD9Q8NDG6 1382 aaKnown RBP21.55■■□□□ 1.04
SUPT16H-202ENST00000552829 SOGA1O94964 1423 aa21.52■■□□□ 1.04
SUPT16H-202ENST00000552829 SNAPC4Q5SXM2 1469 aa21.52■■□□□ 1.03
SUPT16H-202ENST00000552829 WDR97A6NE52 1622 aa21.51■■□□□ 1.03
SUPT16H-202ENST00000552829 SYNJ1O43426 1573 aa21.48■■□□□ 1.03
SUPT16H-202ENST00000552829 MAGI1Q96QZ7 1491 aaPredicted RBP21.46■■□□□ 1.03
SUPT16H-202ENST00000552829 CHMP7Q8WUX9 453 aaPredicted RBP21.45■■□□□ 1.02
SUPT16H-202ENST00000552829 FGD5Q6ZNL6 1462 aa21.41■■□□□ 1.02
SUPT16H-202ENST00000552829 GRIN2BQ13224 1484 aa21.4■■□□□ 1.02
SUPT16H-202ENST00000552829 SYNJ2O15056 1496 aa21.39■■□□□ 1.02
SUPT16H-202ENST00000552829 GAPVD1Q14C86 1478 aa21.38■■□□□ 1.01
SUPT16H-202ENST00000552829 CUX1P39880 1505 aa21.34■■□□□ 1.01
SUPT16H-202ENST00000552829 PBRM1Q86U86 1689 aa21.27■■□□□ 1
SUPT16H-202ENST00000552829 ERCC6L2Q5T890 1561 aa21.22■□□□□ 0.99
SUPT16H-202ENST00000552829 ABCA5Q8WWZ7 1642 aa21.18■□□□□ 0.98
SUPT16H-202ENST00000552829 ABCA10Q8WWZ4 1543 aa21.17■□□□□ 0.98
SUPT16H-202ENST00000552829 CEP170Q5SW79 1584 aa21.13■□□□□ 0.97
SUPT16H-202ENST00000552829 GRIN2AQ12879 1464 aa21.13■□□□□ 0.97
SUPT16H-202ENST00000552829 KIF13AQ9H1H9 1805 aa21.12■□□□□ 0.97
SUPT16H-202ENST00000552829 NUP160Q12769 1436 aa21.12■□□□□ 0.97
SUPT16H-202ENST00000552829 SHROOM2Q13796 1616 aa21.09■□□□□ 0.97
SUPT16H-202ENST00000552829 ADAMTS12P58397 1594 aa21.04■□□□□ 0.96
SUPT16H-202ENST00000552829 FHAD1B1AJZ9 1412 aa20.96■□□□□ 0.95
SUPT16H-202ENST00000552829 WRNQ14191 1432 aaPredicted RBP eCLIP20.95■□□□□ 0.94
SUPT16H-202ENST00000552829 ABCC10Q5T3U5 1492 aa20.91■□□□□ 0.94
SUPT16H-202ENST00000552829 PRG4Q92954 1404 aaPredicted RBP20.91■□□□□ 0.94
SUPT16H-202ENST00000552829 ERICH3Q5RHP9 1530 aa20.88■□□□□ 0.93
SUPT16H-202ENST00000552829 KDM4FA0A1W2PPD8 638 aa20.88■□□□□ 0.93
SUPT16H-202ENST00000552829 FAM69CQ0P6D2 419 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms