RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 NISCHQ9Y2I1 1504 aa29.88■■■□□ 2.37
CKAP4-202ENST00000552828 ABCC9O60706 1549 aa26.9■■□□□ 1.9
CKAP4-202ENST00000552828 CCDC180Q9P1Z9 1646 aa26.8■■□□□ 1.88
CKAP4-202ENST00000552828 RB1CC1Q8TDY2 1594 aa25.57■■□□□ 1.68
CKAP4-202ENST00000552828 NACADO15069 1562 aa25.41■■□□□ 1.66
CKAP4-202ENST00000552828 DNAJC5BQ9UF47 199 aa25.39■■□□□ 1.66
CKAP4-202ENST00000552828 DCAF8L2P0C7V8 631 aa25.2■■□□□ 1.62
CKAP4-202ENST00000552828 MYO15BQ96JP2 1530 aa25.09■■□□□ 1.61
CKAP4-202ENST00000552828 PABPN1Q86U42 306 aaKnown RBP eCLIP25.05■■□□□ 1.6
CKAP4-202ENST00000552828 UNC13AQ9UPW8 1703 aa24.9■■□□□ 1.58
CKAP4-202ENST00000552828 BICRAQ9NZM4 1560 aa24.85■■□□□ 1.57
CKAP4-202ENST00000552828 ZCCHC6Q5VYS8 1495 aaKnown RBP24.74■■□□□ 1.55
CKAP4-202ENST00000552828 DCAF1Q9Y4B6 1507 aa24.72■■□□□ 1.55
CKAP4-202ENST00000552828 SHROOM4Q9ULL8 1493 aa24.57■■□□□ 1.52
CKAP4-202ENST00000552828 SCRIBQ14160 1630 aa24.38■■□□□ 1.49
CKAP4-202ENST00000552828 CC2D2AQ9P2K1 1620 aa24.29■■□□□ 1.48
CKAP4-202ENST00000552828 CECR2Q9BXF3 1484 aa24.27■■□□□ 1.48
CKAP4-202ENST00000552828 EIF4G1Q04637 1599 aaKnown RBP24.24■■□□□ 1.47
CKAP4-202ENST00000552828 NCAPD3P42695 1498 aa23.5■■□□□ 1.35
CKAP4-202ENST00000552828 DNAJC5Q9H3Z4 198 aa23.41■■□□□ 1.34
CKAP4-202ENST00000552828 ATAD2BQ9ULI0 1458 aa23.39■■□□□ 1.34
CKAP4-202ENST00000552828 SMARCA2P51531 1590 aa23.29■■□□□ 1.32
CKAP4-202ENST00000552828 SMARCA4P51532 1647 aa23.29■■□□□ 1.32
CKAP4-202ENST00000552828 HMGXB3Q12766 1538 aa23.28■■□□□ 1.32
CKAP4-202ENST00000552828 CUX2O14529 1486 aa23.27■■□□□ 1.32
CKAP4-202ENST00000552828 ERCC6Q03468 1493 aa23.23■■□□□ 1.31
CKAP4-202ENST00000552828 BAZ1AQ9NRL2 1556 aaPredicted RBP23.18■■□□□ 1.3
CKAP4-202ENST00000552828 PEG3Q9GZU2 1588 aa23.12■■□□□ 1.29
CKAP4-202ENST00000552828 BAZ1BQ9UIG0 1483 aaKnown RBP23.11■■□□□ 1.29
CKAP4-202ENST00000552828 NESP48681 1621 aa23.08■■□□□ 1.29
CKAP4-202ENST00000552828 MROH2BQ7Z745 1585 aa23■■□□□ 1.27
CKAP4-202ENST00000552828 LAMC3Q9Y6N6 1575 aa22.93■■□□□ 1.26
CKAP4-202ENST00000552828 THOC2Q8NI27 1593 aaKnown RBP22.86■■□□□ 1.25
CKAP4-202ENST00000552828 PDS5BQ9NTI5 1447 aa22.83■■□□□ 1.25
CKAP4-202ENST00000552828 CADPSQ9ULU8 1353 aa22.77■■□□□ 1.24
CKAP4-202ENST00000552828 KIF21AQ7Z4S6 1674 aa22.71■■□□□ 1.23
CKAP4-202ENST00000552828 WIZO95785 1651 aa22.67■■□□□ 1.22
CKAP4-202ENST00000552828 MRC2Q9UBG0 1479 aa22.61■■□□□ 1.21
CKAP4-202ENST00000552828 WDR62O43379 1518 aa22.57■■□□□ 1.2
CKAP4-202ENST00000552828 RSF1Q96T23 1441 aaPredicted RBP22.52■■□□□ 1.2
CKAP4-202ENST00000552828 CFTRP13569 1480 aa22.49■■□□□ 1.19
CKAP4-202ENST00000552828 CEP164Q9UPV0 1460 aa22.48■■□□□ 1.19
CKAP4-202ENST00000552828 FANCD2Q9BXW9 1451 aa22.47■■□□□ 1.19
CKAP4-202ENST00000552828 TOP2AP11388 1531 aaKnown RBP22.42■■□□□ 1.18
CKAP4-202ENST00000552828 URB2Q14146 1524 aaKnown RBP22.29■■□□□ 1.16
CKAP4-202ENST00000552828 TRIM41Q8WV44 630 aa22.24■■□□□ 1.15
CKAP4-202ENST00000552828 OSCARQ8IYS5 282 aa22.21■■□□□ 1.15
CKAP4-202ENST00000552828 CCDC88BA6NC98 1476 aa22.2■■□□□ 1.14
CKAP4-202ENST00000552828 PRDM2Q13029 1718 aa22.11■■□□□ 1.13
CKAP4-202ENST00000552828 IFT140Q96RY7 1462 aa22.08■■□□□ 1.12
CKAP4-202ENST00000552828 TOPBP1Q92547 1522 aa22.03■■□□□ 1.12
CKAP4-202ENST00000552828 ZNF608Q9ULD9 1512 aaPredicted RBP22.02■■□□□ 1.12
CKAP4-202ENST00000552828 ABCC8Q09428 1581 aa22.01■■□□□ 1.11
CKAP4-202ENST00000552828 DNMBPQ6XZF7 1577 aa21.93■■□□□ 1.1
CKAP4-202ENST00000552828 EIF4G3O43432 1585 aaKnown RBP21.86■■□□□ 1.09
CKAP4-202ENST00000552828 RIMBP3CA6NJZ7 1639 aa21.85■■□□□ 1.09
CKAP4-202ENST00000552828 RIMBP3BA6NNM3 1639 aa21.85■■□□□ 1.09
CKAP4-202ENST00000552828 RIMBP3Q9UFD9 1639 aa21.85■■□□□ 1.09
CKAP4-202ENST00000552828 TARBP1Q13395 1621 aaKnown RBP21.84■■□□□ 1.09
CKAP4-202ENST00000552828 AQRO60306 1485 aaKnown RBP eCLIP21.83■■□□□ 1.08
CKAP4-202ENST00000552828 POLA1P09884 1462 aaPredicted RBP21.81■■□□□ 1.08
CKAP4-202ENST00000552828 ARHGEF11O15085 1522 aa21.8■■□□□ 1.08
CKAP4-202ENST00000552828 SOGA1O94964 1423 aa21.72■■□□□ 1.07
CKAP4-202ENST00000552828 RAD54L2Q9Y4B4 1467 aa21.71■■□□□ 1.07
CKAP4-202ENST00000552828 TDRD9Q8NDG6 1382 aaKnown RBP21.68■■□□□ 1.06
CKAP4-202ENST00000552828 CHD1O14646 1710 aa21.66■■□□□ 1.06
CKAP4-202ENST00000552828 FBLN2P98095 1184 aa21.66■■□□□ 1.06
CKAP4-202ENST00000552828 CYB5RLQ6IPT4 315 aa21.66■■□□□ 1.06
CKAP4-202ENST00000552828 FGD5Q6ZNL6 1462 aa21.64■■□□□ 1.05
CKAP4-202ENST00000552828 WDR97A6NE52 1622 aa21.63■■□□□ 1.05
CKAP4-202ENST00000552828 CUX1P39880 1505 aa21.61■■□□□ 1.05
CKAP4-202ENST00000552828 ARAP1Q96P48 1450 aa21.59■■□□□ 1.05
CKAP4-202ENST00000552828 SNAPC4Q5SXM2 1469 aa21.58■■□□□ 1.04
CKAP4-202ENST00000552828 MAGI1Q96QZ7 1491 aaPredicted RBP21.55■■□□□ 1.04
CKAP4-202ENST00000552828 GRIN2BQ13224 1484 aa21.53■■□□□ 1.04
CKAP4-202ENST00000552828 CHMP7Q8WUX9 453 aaPredicted RBP21.53■■□□□ 1.04
CKAP4-202ENST00000552828 CLASP1Q7Z460 1538 aa21.51■■□□□ 1.03
CKAP4-202ENST00000552828 SYNJ2O15056 1496 aa21.48■■□□□ 1.03
CKAP4-202ENST00000552828 SYNJ1O43426 1573 aa21.46■■□□□ 1.03
CKAP4-202ENST00000552828 GAPVD1Q14C86 1478 aa21.44■■□□□ 1.02
CKAP4-202ENST00000552828 ABCA10Q8WWZ4 1543 aa21.43■■□□□ 1.02
CKAP4-202ENST00000552828 TRHP20396 242 aaPredicted RBP21.42■■□□□ 1.02
CKAP4-202ENST00000552828 SUPT5HO00267 1087 aaKnown RBP21.39■■□□□ 1.01
CKAP4-202ENST00000552828 ABCA5Q8WWZ7 1642 aa21.36■■□□□ 1.01
CKAP4-202ENST00000552828 PBRM1Q86U86 1689 aa21.34■■□□□ 1.01
CKAP4-202ENST00000552828 WRNQ14191 1432 aaPredicted RBP eCLIP21.32■■□□□ 1
CKAP4-202ENST00000552828 GRIN2AQ12879 1464 aa21.25■□□□□ 0.99
CKAP4-202ENST00000552828 TOP2BQ02880 1626 aa21.23■□□□□ 0.99
CKAP4-202ENST00000552828 NUP160Q12769 1436 aa21.21■□□□□ 0.99
CKAP4-202ENST00000552828 BIVM-ERCC5R4GMW8 1640 aa21.21■□□□□ 0.99
CKAP4-202ENST00000552828 ADAMTS12P58397 1594 aa21.19■□□□□ 0.98
CKAP4-202ENST00000552828 FHAD1B1AJZ9 1412 aa21.18■□□□□ 0.98
CKAP4-202ENST00000552828 CEP170Q5SW79 1584 aa21.15■□□□□ 0.98
CKAP4-202ENST00000552828 ERICH3Q5RHP9 1530 aa21.14■□□□□ 0.98
CKAP4-202ENST00000552828 ERCC6L2Q5T890 1561 aa21.14■□□□□ 0.97
CKAP4-202ENST00000552828 SHROOM2Q13796 1616 aa21.09■□□□□ 0.97
CKAP4-202ENST00000552828 JPH4Q96JJ6 628 aa21■□□□□ 0.95
CKAP4-202ENST00000552828 PRG4Q92954 1404 aaPredicted RBP20.99■□□□□ 0.95
CKAP4-202ENST00000552828 RUSC2Q8N2Y8 1516 aa20.89■□□□□ 0.94
CKAP4-202ENST00000552828 IGF1RP08069 1367 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms