RNA–Protein interactions for RNA: ENST00000552608.6

LINC00661-206, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best)

Gene LINC00661, Length 1,130 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-206ENST00000552608 NISCHQ9Y2I1 1504 aa25.12■■□□□ 1.61
LINC00661-206ENST00000552608 CCDC180Q9P1Z9 1646 aa22.12■■□□□ 1.13
LINC00661-206ENST00000552608 ZCCHC6Q5VYS8 1495 aaKnown RBP21.07■□□□□ 0.96
LINC00661-206ENST00000552608 ABCC9O60706 1549 aa20.88■□□□□ 0.93
LINC00661-206ENST00000552608 DCAF1Q9Y4B6 1507 aa20.83■□□□□ 0.93
LINC00661-206ENST00000552608 DCAF8L2P0C7V8 631 aa20.71■□□□□ 0.91
LINC00661-206ENST00000552608 MYO15BQ96JP2 1530 aa20.67■□□□□ 0.9
LINC00661-206ENST00000552608 NACADO15069 1562 aa20.59■□□□□ 0.89
LINC00661-206ENST00000552608 RB1CC1Q8TDY2 1594 aa20.46■□□□□ 0.87
LINC00661-206ENST00000552608 SHROOM4Q9ULL8 1493 aa20.24■□□□□ 0.83
LINC00661-206ENST00000552608 SCRIBQ14160 1630 aa20.18■□□□□ 0.82
LINC00661-206ENST00000552608 UNC13AQ9UPW8 1703 aa20.02■□□□□ 0.8
LINC00661-206ENST00000552608 BICRAQ9NZM4 1560 aa19.73■□□□□ 0.75
LINC00661-206ENST00000552608 PABPN1Q86U42 306 aaKnown RBP eCLIP19.58■□□□□ 0.72
LINC00661-206ENST00000552608 BAZ1AQ9NRL2 1556 aaPredicted RBP19.47■□□□□ 0.71
LINC00661-206ENST00000552608 CECR2Q9BXF3 1484 aa19.43■□□□□ 0.7
LINC00661-206ENST00000552608 SUPT5HO00267 1087 aaKnown RBP19.42■□□□□ 0.7
LINC00661-206ENST00000552608 SMARCA4P51532 1647 aa19.37■□□□□ 0.69
LINC00661-206ENST00000552608 RSF1Q96T23 1441 aaPredicted RBP19.35■□□□□ 0.69
LINC00661-206ENST00000552608 MROH2BQ7Z745 1585 aa19.34■□□□□ 0.69
LINC00661-206ENST00000552608 WIZO95785 1651 aa19.21■□□□□ 0.67
LINC00661-206ENST00000552608 EIF4G1Q04637 1599 aaKnown RBP19.19■□□□□ 0.66
LINC00661-206ENST00000552608 PEG3Q9GZU2 1588 aa19.15■□□□□ 0.66
LINC00661-206ENST00000552608 SMARCA2P51531 1590 aa19.12■□□□□ 0.65
LINC00661-206ENST00000552608 TOP2AP11388 1531 aaKnown RBP19.07■□□□□ 0.64
LINC00661-206ENST00000552608 ATAD2BQ9ULI0 1458 aa19.04■□□□□ 0.64
LINC00661-206ENST00000552608 BAZ1BQ9UIG0 1483 aaKnown RBP18.97■□□□□ 0.63
LINC00661-206ENST00000552608 CC2D2AQ9P2K1 1620 aa18.96■□□□□ 0.63
LINC00661-206ENST00000552608 HMGXB3Q12766 1538 aa18.95■□□□□ 0.62
LINC00661-206ENST00000552608 NCAPD3P42695 1498 aa18.93■□□□□ 0.62
LINC00661-206ENST00000552608 CCDC88BA6NC98 1476 aa18.78■□□□□ 0.6
LINC00661-206ENST00000552608 PRDM2Q13029 1718 aa18.53■□□□□ 0.56
LINC00661-206ENST00000552608 CHIC1Q5VXU3 224 aa18.5■□□□□ 0.55
LINC00661-206ENST00000552608 CFTRP13569 1480 aa18.46■□□□□ 0.54
LINC00661-206ENST00000552608 CADPSQ9ULU8 1353 aa18.42■□□□□ 0.54
LINC00661-206ENST00000552608 DNAJC5BQ9UF47 199 aa18.41■□□□□ 0.54
LINC00661-206ENST00000552608 LAMC3Q9Y6N6 1575 aa18.39■□□□□ 0.53
LINC00661-206ENST00000552608 TRIM41Q8WV44 630 aa18.34■□□□□ 0.53
LINC00661-206ENST00000552608 ABCC8Q09428 1581 aa18.33■□□□□ 0.52
LINC00661-206ENST00000552608 WRNQ14191 1432 aaPredicted RBP eCLIP18.28■□□□□ 0.52
LINC00661-206ENST00000552608 NESP48681 1621 aa18.24■□□□□ 0.51
LINC00661-206ENST00000552608 FANCD2Q9BXW9 1451 aa18.23■□□□□ 0.51
LINC00661-206ENST00000552608 PDS5BQ9NTI5 1447 aa18.22■□□□□ 0.51
LINC00661-206ENST00000552608 BIVM-ERCC5R4GMW8 1640 aa18.21■□□□□ 0.51
LINC00661-206ENST00000552608 SYNJ1O43426 1573 aa18.19■□□□□ 0.5
LINC00661-206ENST00000552608 TOP2BQ02880 1626 aa18.19■□□□□ 0.5
LINC00661-206ENST00000552608 CEP164Q9UPV0 1460 aa18.17■□□□□ 0.5
LINC00661-206ENST00000552608 KIF21AQ7Z4S6 1674 aa18.15■□□□□ 0.5
LINC00661-206ENST00000552608 CUX1P39880 1505 aa18.11■□□□□ 0.49
LINC00661-206ENST00000552608 DNMBPQ6XZF7 1577 aa18.09■□□□□ 0.49
LINC00661-206ENST00000552608 TOPBP1Q92547 1522 aa18.02■□□□□ 0.47
LINC00661-206ENST00000552608 EEA1Q15075 1411 aa18.01■□□□□ 0.47
LINC00661-206ENST00000552608 ERCC6Q03468 1493 aa18.01■□□□□ 0.47
LINC00661-206ENST00000552608 MRC2Q9UBG0 1479 aa17.99■□□□□ 0.47
LINC00661-206ENST00000552608 FGD5Q6ZNL6 1462 aa17.97■□□□□ 0.47
LINC00661-206ENST00000552608 URB2Q14146 1524 aaKnown RBP17.97■□□□□ 0.47
LINC00661-206ENST00000552608 SOGA1O94964 1423 aa17.91■□□□□ 0.46
LINC00661-206ENST00000552608 FAM9AQ8IZU1 332 aaPredicted RBP17.91■□□□□ 0.46
LINC00661-206ENST00000552608 POLA1P09884 1462 aaPredicted RBP17.9■□□□□ 0.46
LINC00661-206ENST00000552608 WDR62O43379 1518 aa17.9■□□□□ 0.46
LINC00661-206ENST00000552608 THOC2Q8NI27 1593 aaKnown RBP17.88■□□□□ 0.45
LINC00661-206ENST00000552608 KIF27Q86VH2 1401 aa17.86■□□□□ 0.45
LINC00661-206ENST00000552608 WDR97A6NE52 1622 aa17.83■□□□□ 0.45
LINC00661-206ENST00000552608 RUSC2Q8N2Y8 1516 aa17.83■□□□□ 0.45
LINC00661-206ENST00000552608 ABCA10Q8WWZ4 1543 aa17.82■□□□□ 0.44
LINC00661-206ENST00000552608 CSRNP3Q8WYN3 585 aa17.82■□□□□ 0.44
LINC00661-206ENST00000552608 CUX2O14529 1486 aa17.82■□□□□ 0.44
LINC00661-206ENST00000552608 RAD54L2Q9Y4B4 1467 aa17.79■□□□□ 0.44
LINC00661-206ENST00000552608 KIF21BO75037 1637 aa17.77■□□□□ 0.44
LINC00661-206ENST00000552608 TARBP1Q13395 1621 aaKnown RBP17.77■□□□□ 0.44
LINC00661-206ENST00000552608 IFT140Q96RY7 1462 aa17.75■□□□□ 0.43
LINC00661-206ENST00000552608 GOLGA3Q08378 1498 aa17.72■□□□□ 0.43
LINC00661-206ENST00000552608 ABCA5Q8WWZ7 1642 aa17.72■□□□□ 0.43
LINC00661-206ENST00000552608 LOC105371045A0A1W2PR82 267 aa17.71■□□□□ 0.43
LINC00661-206ENST00000552608 ERICH3Q5RHP9 1530 aa17.68■□□□□ 0.42
LINC00661-206ENST00000552608 CUL7Q14999 1698 aa17.68■□□□□ 0.42
LINC00661-206ENST00000552608 PBRM1Q86U86 1689 aa17.67■□□□□ 0.42
LINC00661-206ENST00000552608 GAPVD1Q14C86 1478 aa17.66■□□□□ 0.42
LINC00661-206ENST00000552608 PRXQ9BXM0 1461 aa17.64■□□□□ 0.41
LINC00661-206ENST00000552608 IGF1RP08069 1367 aa17.63■□□□□ 0.41
LINC00661-206ENST00000552608 TDRD9Q8NDG6 1382 aaKnown RBP17.62■□□□□ 0.41
LINC00661-206ENST00000552608 EHMT2Q96KQ7 1210 aa17.61■□□□□ 0.41
LINC00661-206ENST00000552608 EIF4G3O43432 1585 aaKnown RBP17.59■□□□□ 0.41
LINC00661-206ENST00000552608 TNIKQ9UKE5 1360 aa17.59■□□□□ 0.41
LINC00661-206ENST00000552608 UBTFP17480 764 aaKnown RBP17.59■□□□□ 0.41
LINC00661-206ENST00000552608 RAPGEF2Q9Y4G8 1499 aa17.58■□□□□ 0.41
LINC00661-206ENST00000552608 CARMIL1Q5VZK9 1371 aa17.58■□□□□ 0.4
LINC00661-206ENST00000552608 GRIN2BQ13224 1484 aa17.57■□□□□ 0.4
LINC00661-206ENST00000552608 AQRO60306 1485 aaKnown RBP eCLIP17.55■□□□□ 0.4
LINC00661-206ENST00000552608 ZNF608Q9ULD9 1512 aaPredicted RBP17.54■□□□□ 0.4
LINC00661-206ENST00000552608 ADAMTS12P58397 1594 aa17.5■□□□□ 0.39
LINC00661-206ENST00000552608 FHAD1B1AJZ9 1412 aa17.48■□□□□ 0.39
LINC00661-206ENST00000552608 CTTNBP2Q8WZ74 1663 aa17.48■□□□□ 0.39
LINC00661-206ENST00000552608 MAGI1Q96QZ7 1491 aaPredicted RBP17.46■□□□□ 0.39
LINC00661-206ENST00000552608 CEP162Q5TB80 1403 aa17.46■□□□□ 0.39
LINC00661-206ENST00000552608 SNAPC4Q5SXM2 1469 aa17.44■□□□□ 0.38
LINC00661-206ENST00000552608 CLIP1P30622 1438 aa17.38■□□□□ 0.37
LINC00661-206ENST00000552608 SYNJ2O15056 1496 aa17.37■□□□□ 0.37
LINC00661-206ENST00000552608 GRIN2AQ12879 1464 aa17.34■□□□□ 0.37
LINC00661-206ENST00000552608 CHMP7Q8WUX9 453 aaPredicted RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms