RNA–Protein interactions for RNA: ENST00000552465.1

CACNB3-222, Transcript of calcium voltage-gated channel auxiliary subunit beta 3, human

TSL 3

Gene CACNB3, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNB3-222	ENST00000552465	NISCH	Q9Y2I1	1504 aa		42.88	■■■■■ 4.46
CACNB3-222	ENST00000552465	ABCC9	O60706	1549 aa		39.04	■■■■□ 3.84
CACNB3-222	ENST00000552465	CCDC180	Q9P1Z9	1646 aa		38.55	■■■■□ 3.76
CACNB3-222	ENST00000552465	DNAJC5B	Q9UF47	199 aa		37.06	■■■■□ 3.52
CACNB3-222	ENST00000552465	RB1CC1	Q8TDY2	1594 aa		36.94	■■■■□ 3.5
CACNB3-222	ENST00000552465	NACAD	O15069	1562 aa		36.61	■■■■□ 3.45
CACNB3-222	ENST00000552465	DCAF8L2	P0C7V8	631 aa		36.45	■■■■□ 3.43
CACNB3-222	ENST00000552465	PABPN1	Q86U42	306 aa	Known RBP eCLIP	36.35	■■■■□ 3.41
CACNB3-222	ENST00000552465	MYO15B	Q96JP2	1530 aa		36	■■■■□ 3.35
CACNB3-222	ENST00000552465	UNC13A	Q9UPW8	1703 aa		35.99	■■■■□ 3.35
CACNB3-222	ENST00000552465	BICRA	Q9NZM4	1560 aa		35.89	■■■■□ 3.34
CACNB3-222	ENST00000552465	ZCCHC6	Q5VYS8	1495 aa	Known RBP	35.43	■■■■□ 3.26
CACNB3-222	ENST00000552465	DCAF1	Q9Y4B6	1507 aa		35.38	■■■■□ 3.25
CACNB3-222	ENST00000552465	SHROOM4	Q9ULL8	1493 aa		35.36	■■■■□ 3.25
CACNB3-222	ENST00000552465	CECR2	Q9BXF3	1484 aa		35.21	■■■■□ 3.23
CACNB3-222	ENST00000552465	CC2D2A	Q9P2K1	1620 aa		35.2	■■■■□ 3.23
CACNB3-222	ENST00000552465	SCRIB	Q14160	1630 aa		35.14	■■■■□ 3.22
CACNB3-222	ENST00000552465	EIF4G1	Q04637	1599 aa	Known RBP	35.04	■■■■□ 3.2
CACNB3-222	ENST00000552465	DNAJC5	Q9H3Z4	198 aa		34.31	■■■■□ 3.08
CACNB3-222	ENST00000552465	NCAPD3	P42695	1498 aa		33.86	■■■■□ 3.01
CACNB3-222	ENST00000552465	CUX2	O14529	1486 aa		33.79	■■■■□ 3
CACNB3-222	ENST00000552465	ERCC6	Q03468	1493 aa		33.72	■■■□□ 2.99
CACNB3-222	ENST00000552465	ATAD2B	Q9ULI0	1458 aa		33.69	■■■□□ 2.98
CACNB3-222	ENST00000552465	SMARCA2	P51531	1590 aa		33.53	■■■□□ 2.96
CACNB3-222	ENST00000552465	HMGXB3	Q12766	1538 aa		33.5	■■■□□ 2.95
CACNB3-222	ENST00000552465	SMARCA4	P51532	1647 aa		33.48	■■■□□ 2.95
CACNB3-222	ENST00000552465	NES	P48681	1621 aa		33.42	■■■□□ 2.94
CACNB3-222	ENST00000552465	BAZ1B	Q9UIG0	1483 aa	Known RBP	33.31	■■■□□ 2.92
CACNB3-222	ENST00000552465	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	33.28	■■■□□ 2.92
CACNB3-222	ENST00000552465	PEG3	Q9GZU2	1588 aa		33.18	■■■□□ 2.9
CACNB3-222	ENST00000552465	THOC2	Q8NI27	1593 aa	Known RBP	33.09	■■■□□ 2.89
CACNB3-222	ENST00000552465	LAMC3	Q9Y6N6	1575 aa		33.09	■■■□□ 2.89
CACNB3-222	ENST00000552465	MROH2B	Q7Z745	1585 aa		33.04	■■■□□ 2.88
CACNB3-222	ENST00000552465	PDS5B	Q9NTI5	1447 aa		32.97	■■■□□ 2.87
CACNB3-222	ENST00000552465	KIF21A	Q7Z4S6	1674 aa		32.87	■■■□□ 2.85
CACNB3-222	ENST00000552465	CADPS	Q9ULU8	1353 aa		32.83	■■■□□ 2.85
CACNB3-222	ENST00000552465	MRC2	Q9UBG0	1479 aa		32.68	■■■□□ 2.82
CACNB3-222	ENST00000552465	TRIM41	Q8WV44	630 aa		32.61	■■■□□ 2.81
CACNB3-222	ENST00000552465	WDR62	O43379	1518 aa		32.59	■■■□□ 2.81
CACNB3-222	ENST00000552465	WIZ	O95785	1651 aa		32.57	■■■□□ 2.8
CACNB3-222	ENST00000552465	CEP164	Q9UPV0	1460 aa		32.46	■■■□□ 2.79
CACNB3-222	ENST00000552465	FANCD2	Q9BXW9	1451 aa		32.41	■■■□□ 2.78
CACNB3-222	ENST00000552465	CFTR	P13569	1480 aa		32.35	■■■□□ 2.77
CACNB3-222	ENST00000552465	OSCAR	Q8IYS5	282 aa		32.27	■■■□□ 2.76
CACNB3-222	ENST00000552465	RSF1	Q96T23	1441 aa	Predicted RBP	32.25	■■■□□ 2.75
CACNB3-222	ENST00000552465	URB2	Q14146	1524 aa	Known RBP	32.16	■■■□□ 2.74
CACNB3-222	ENST00000552465	TOP2A	P11388	1531 aa	Known RBP	32.16	■■■□□ 2.74
CACNB3-222	ENST00000552465	CCDC88B	A6NC98	1476 aa		31.85	■■■□□ 2.69
CACNB3-222	ENST00000552465	IFT140	Q96RY7	1462 aa		31.85	■■■□□ 2.69
CACNB3-222	ENST00000552465	ZNF608	Q9ULD9	1512 aa	Predicted RBP	31.85	■■■□□ 2.69
CACNB3-222	ENST00000552465	PRDM2	Q13029	1718 aa		31.8	■■■□□ 2.68
CACNB3-222	ENST00000552465	RIMBP3C	A6NJZ7	1639 aa		31.77	■■■□□ 2.68
CACNB3-222	ENST00000552465	RIMBP3B	A6NNM3	1639 aa		31.77	■■■□□ 2.68
CACNB3-222	ENST00000552465	RIMBP3	Q9UFD9	1639 aa		31.77	■■■□□ 2.68
CACNB3-222	ENST00000552465	TOPBP1	Q92547	1522 aa		31.75	■■■□□ 2.67
CACNB3-222	ENST00000552465	ABCC8	Q09428	1581 aa		31.66	■■■□□ 2.66
CACNB3-222	ENST00000552465	ARHGEF11	O15085	1522 aa		31.65	■■■□□ 2.66
CACNB3-222	ENST00000552465	EIF4G3	O43432	1585 aa	Known RBP	31.56	■■■□□ 2.64
CACNB3-222	ENST00000552465	DNMBP	Q6XZF7	1577 aa		31.56	■■■□□ 2.64
CACNB3-222	ENST00000552465	CYB5RL	Q6IPT4	315 aa		31.54	■■■□□ 2.64
CACNB3-222	ENST00000552465	AQR	O60306	1485 aa	Known RBP eCLIP	31.53	■■■□□ 2.64
CACNB3-222	ENST00000552465	TARBP1	Q13395	1621 aa	Known RBP	31.46	■■■□□ 2.63
CACNB3-222	ENST00000552465	FBLN2	P98095	1184 aa		31.43	■■■□□ 2.62
CACNB3-222	ENST00000552465	POLA1	P09884	1462 aa	Predicted RBP	31.4	■■■□□ 2.62
CACNB3-222	ENST00000552465	CHD1	O14646	1710 aa		31.37	■■■□□ 2.61
CACNB3-222	ENST00000552465	ARAP1	Q96P48	1450 aa		31.33	■■■□□ 2.61
CACNB3-222	ENST00000552465	RAD54L2	Q9Y4B4	1467 aa		31.32	■■■□□ 2.6
CACNB3-222	ENST00000552465	TRH	P20396	242 aa	Predicted RBP	31.3	■■■□□ 2.6
CACNB3-222	ENST00000552465	SOGA1	O94964	1423 aa		31.3	■■■□□ 2.6
CACNB3-222	ENST00000552465	TDRD9	Q8NDG6	1382 aa	Known RBP	31.3	■■■□□ 2.6
CACNB3-222	ENST00000552465	SNAPC4	Q5SXM2	1469 aa		31.15	■■■□□ 2.58
CACNB3-222	ENST00000552465	FGD5	Q6ZNL6	1462 aa		31.14	■■■□□ 2.58
CACNB3-222	ENST00000552465	CHMP7	Q8WUX9	453 aa	Predicted RBP	31.14	■■■□□ 2.58
CACNB3-222	ENST00000552465	WDR97	A6NE52	1622 aa		31.09	■■■□□ 2.57
CACNB3-222	ENST00000552465	CLASP1	Q7Z460	1538 aa		31.08	■■■□□ 2.57
CACNB3-222	ENST00000552465	MAGI1	Q96QZ7	1491 aa	Predicted RBP	31.06	■■■□□ 2.56
CACNB3-222	ENST00000552465	CUX1	P39880	1505 aa		31.05	■■■□□ 2.56
CACNB3-222	ENST00000552465	GRIN2B	Q13224	1484 aa		31.03	■■■□□ 2.56
CACNB3-222	ENST00000552465	SYNJ1	O43426	1573 aa		31.01	■■■□□ 2.56
CACNB3-222	ENST00000552465	SYNJ2	O15056	1496 aa		30.97	■■■□□ 2.55
CACNB3-222	ENST00000552465	GAPVD1	Q14C86	1478 aa		30.88	■■■□□ 2.53
CACNB3-222	ENST00000552465	ABCA10	Q8WWZ4	1543 aa		30.78	■■■□□ 2.52
CACNB3-222	ENST00000552465	PBRM1	Q86U86	1689 aa		30.76	■■■□□ 2.51
CACNB3-222	ENST00000552465	ABCA5	Q8WWZ7	1642 aa		30.71	■■■□□ 2.51
CACNB3-222	ENST00000552465	AEBP2	Q6ZN18	517 aa	Predicted RBP	30.66	■■■□□ 2.5
CACNB3-222	ENST00000552465	GRIN2A	Q12879	1464 aa		30.62	■■■□□ 2.49
CACNB3-222	ENST00000552465	WRN	Q14191	1432 aa	Predicted RBP eCLIP	30.6	■■■□□ 2.49
CACNB3-222	ENST00000552465	ERCC6L2	Q5T890	1561 aa		30.58	■■■□□ 2.49
CACNB3-222	ENST00000552465	SUPT5H	O00267	1087 aa	Known RBP	30.57	■■■□□ 2.48
CACNB3-222	ENST00000552465	NUP160	Q12769	1436 aa		30.56	■■■□□ 2.48
CACNB3-222	ENST00000552465	ADAMTS12	P58397	1594 aa		30.51	■■■□□ 2.47
CACNB3-222	ENST00000552465	CEP170	Q5SW79	1584 aa		30.5	■■■□□ 2.47
CACNB3-222	ENST00000552465	FHAD1	B1AJZ9	1412 aa		30.48	■■■□□ 2.47
CACNB3-222	ENST00000552465	TOP2B	Q02880	1626 aa		30.42	■■■□□ 2.46
CACNB3-222	ENST00000552465	SHROOM2	Q13796	1616 aa		30.4	■■■□□ 2.46
CACNB3-222	ENST00000552465	BIVM-ERCC5	R4GMW8	1640 aa		30.4	■■■□□ 2.46
CACNB3-222	ENST00000552465	ERICH3	Q5RHP9	1530 aa		30.36	■■■□□ 2.45
CACNB3-222	ENST00000552465	PRG4	Q92954	1404 aa	Predicted RBP	30.31	■■■□□ 2.44
CACNB3-222	ENST00000552465	JPH4	Q96JJ6	628 aa		30.3	■■■□□ 2.44
CACNB3-222	ENST00000552465	KIF13A	Q9H1H9	1805 aa		30.15	■■■□□ 2.42

Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms