RNA–Protein interactions for RNA: ENST00000551966.5

SMARCD1-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 5

Gene SMARCD1, Length 881 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-212ENST00000551966 NISCHQ9Y2I1 1504 aa54.92■■■■■ 6.38
SMARCD1-212ENST00000551966 ABCC9O60706 1549 aa49.83■■■■■ 5.57
SMARCD1-212ENST00000551966 CCDC180Q9P1Z9 1646 aa49.32■■■■■ 5.49
SMARCD1-212ENST00000551966 DNAJC5BQ9UF47 199 aa47.27■■■■■ 5.16
SMARCD1-212ENST00000551966 RB1CC1Q8TDY2 1594 aa47.17■■■■■ 5.14
SMARCD1-212ENST00000551966 NACADO15069 1562 aa46.77■■■■■ 5.08
SMARCD1-212ENST00000551966 DCAF8L2P0C7V8 631 aa46.61■■■■■ 5.05
SMARCD1-212ENST00000551966 PABPN1Q86U42 306 aaKnown RBP eCLIP46.43■■■■■ 5.02
SMARCD1-212ENST00000551966 UNC13AQ9UPW8 1703 aa46.13■■■■■ 4.98
SMARCD1-212ENST00000551966 MYO15BQ96JP2 1530 aa46.02■■■■■ 4.96
SMARCD1-212ENST00000551966 BICRAQ9NZM4 1560 aa45.92■■■■■ 4.94
SMARCD1-212ENST00000551966 ZCCHC6Q5VYS8 1495 aaKnown RBP45.4■■■■■ 4.86
SMARCD1-212ENST00000551966 DCAF1Q9Y4B6 1507 aa45.29■■■■■ 4.84
SMARCD1-212ENST00000551966 SHROOM4Q9ULL8 1493 aa45.11■■■■■ 4.81
SMARCD1-212ENST00000551966 SCRIBQ14160 1630 aa44.98■■■■■ 4.79
SMARCD1-212ENST00000551966 CC2D2AQ9P2K1 1620 aa44.96■■■■■ 4.79
SMARCD1-212ENST00000551966 CECR2Q9BXF3 1484 aa44.91■■■■■ 4.78
SMARCD1-212ENST00000551966 EIF4G1Q04637 1599 aaKnown RBP44.77■■■■■ 4.76
SMARCD1-212ENST00000551966 DNAJC5Q9H3Z4 198 aa43.6■■■■■ 4.57
SMARCD1-212ENST00000551966 NCAPD3P42695 1498 aa43.26■■■■■ 4.52
SMARCD1-212ENST00000551966 ATAD2BQ9ULI0 1458 aa43.07■■■■■ 4.49
SMARCD1-212ENST00000551966 CUX2O14529 1486 aa43.03■■■■■ 4.48
SMARCD1-212ENST00000551966 ERCC6Q03468 1493 aa42.98■■■■■ 4.47
SMARCD1-212ENST00000551966 SMARCA4P51532 1647 aa42.87■■■■■ 4.45
SMARCD1-212ENST00000551966 SMARCA2P51531 1590 aa42.85■■■■■ 4.45
SMARCD1-212ENST00000551966 HMGXB3Q12766 1538 aa42.81■■■■■ 4.44
SMARCD1-212ENST00000551966 NESP48681 1621 aa42.73■■■■■ 4.43
SMARCD1-212ENST00000551966 BAZ1AQ9NRL2 1556 aaPredicted RBP42.59■■■■■ 4.41
SMARCD1-212ENST00000551966 BAZ1BQ9UIG0 1483 aaKnown RBP42.58■■■■■ 4.41
SMARCD1-212ENST00000551966 PEG3Q9GZU2 1588 aa42.47■■■■■ 4.39
SMARCD1-212ENST00000551966 MROH2BQ7Z745 1585 aa42.35■■■■■ 4.37
SMARCD1-212ENST00000551966 THOC2Q8NI27 1593 aaKnown RBP42.27■■■■■ 4.36
SMARCD1-212ENST00000551966 LAMC3Q9Y6N6 1575 aa42.27■■■■■ 4.36
SMARCD1-212ENST00000551966 KIF21AQ7Z4S6 1674 aa42.07■■■■■ 4.33
SMARCD1-212ENST00000551966 PDS5BQ9NTI5 1447 aa42.07■■■■■ 4.33
SMARCD1-212ENST00000551966 CADPSQ9ULU8 1353 aa41.94■■■■■ 4.3
SMARCD1-212ENST00000551966 WIZO95785 1651 aa41.79■■■■■ 4.28
SMARCD1-212ENST00000551966 MRC2Q9UBG0 1479 aa41.72■■■■■ 4.27
SMARCD1-212ENST00000551966 WDR62O43379 1518 aa41.62■■■■■ 4.25
SMARCD1-212ENST00000551966 TRIM41Q8WV44 630 aa41.48■■■■■ 4.23
SMARCD1-212ENST00000551966 CEP164Q9UPV0 1460 aa41.46■■■■■ 4.23
SMARCD1-212ENST00000551966 FANCD2Q9BXW9 1451 aa41.42■■■■■ 4.22
SMARCD1-212ENST00000551966 CFTRP13569 1480 aa41.36■■■■■ 4.21
SMARCD1-212ENST00000551966 RSF1Q96T23 1441 aaPredicted RBP41.35■■■■■ 4.21
SMARCD1-212ENST00000551966 TOP2AP11388 1531 aaKnown RBP41.18■■■■■ 4.18
SMARCD1-212ENST00000551966 URB2Q14146 1524 aaKnown RBP41.14■■■■■ 4.18
SMARCD1-212ENST00000551966 OSCARQ8IYS5 282 aa41.12■■■■■ 4.17
SMARCD1-212ENST00000551966 CCDC88BA6NC98 1476 aa40.82■■■■■ 4.12
SMARCD1-212ENST00000551966 PRDM2Q13029 1718 aa40.76■■■■■ 4.12
SMARCD1-212ENST00000551966 ZNF608Q9ULD9 1512 aaPredicted RBP40.72■■■■■ 4.11
SMARCD1-212ENST00000551966 IFT140Q96RY7 1462 aa40.67■■■■■ 4.1
SMARCD1-212ENST00000551966 TOPBP1Q92547 1522 aa40.61■■■■■ 4.09
SMARCD1-212ENST00000551966 RIMBP3CA6NJZ7 1639 aa40.54■■■■■ 4.08
SMARCD1-212ENST00000551966 RIMBP3BA6NNM3 1639 aa40.54■■■■■ 4.08
SMARCD1-212ENST00000551966 RIMBP3Q9UFD9 1639 aa40.54■■■■■ 4.08
SMARCD1-212ENST00000551966 ABCC8Q09428 1581 aa40.44■■■■■ 4.06
SMARCD1-212ENST00000551966 ARHGEF11O15085 1522 aa40.38■■■■■ 4.06
SMARCD1-212ENST00000551966 DNMBPQ6XZF7 1577 aa40.37■■■■■ 4.05
SMARCD1-212ENST00000551966 EIF4G3O43432 1585 aaKnown RBP40.36■■■■■ 4.05
SMARCD1-212ENST00000551966 AQRO60306 1485 aaKnown RBP eCLIP40.32■■■■■ 4.044e-6■■■■□ 23.7
SMARCD1-212ENST00000551966 TARBP1Q13395 1621 aaKnown RBP40.27■■■■■ 4.04
SMARCD1-212ENST00000551966 CYB5RLQ6IPT4 315 aa40.21■■■■■ 4.03
SMARCD1-212ENST00000551966 POLA1P09884 1462 aaPredicted RBP40.17■■■■■ 4.02
SMARCD1-212ENST00000551966 CHD1O14646 1710 aa40.13■■■■■ 4.02
SMARCD1-212ENST00000551966 FBLN2P98095 1184 aa40.12■■■■■ 4.01
SMARCD1-212ENST00000551966 RAD54L2Q9Y4B4 1467 aa40.08■■■■■ 4.01
SMARCD1-212ENST00000551966 TDRD9Q8NDG6 1382 aaKnown RBP40.02■■■■■ 4
SMARCD1-212ENST00000551966 SOGA1O94964 1423 aa40.01■■■■■ 4
SMARCD1-212ENST00000551966 ARAP1Q96P48 1450 aa39.98■■■■□ 3.99
SMARCD1-212ENST00000551966 FGD5Q6ZNL6 1462 aa39.86■■■■□ 3.97
SMARCD1-212ENST00000551966 TRHP20396 242 aaPredicted RBP39.84■■■■□ 3.97
SMARCD1-212ENST00000551966 SNAPC4Q5SXM2 1469 aa39.81■■■■□ 3.96
SMARCD1-212ENST00000551966 CUX1P39880 1505 aa39.78■■■■□ 3.96
SMARCD1-212ENST00000551966 CHMP7Q8WUX9 453 aaPredicted RBP39.75■■■■□ 3.95
SMARCD1-212ENST00000551966 WDR97A6NE52 1622 aa39.73■■■■□ 3.95
SMARCD1-212ENST00000551966 CLASP1Q7Z460 1538 aa39.7■■■■□ 3.95
SMARCD1-212ENST00000551966 MAGI1Q96QZ7 1491 aaPredicted RBP39.67■■■■□ 3.94
SMARCD1-212ENST00000551966 GRIN2BQ13224 1484 aa39.66■■■■□ 3.94
SMARCD1-212ENST00000551966 SYNJ1O43426 1573 aa39.59■■■■□ 3.93
SMARCD1-212ENST00000551966 SYNJ2O15056 1496 aa39.56■■■■□ 3.92
SMARCD1-212ENST00000551966 GAPVD1Q14C86 1478 aa39.48■■■■□ 3.91
SMARCD1-212ENST00000551966 PBRM1Q86U86 1689 aa39.41■■■■□ 3.9
SMARCD1-212ENST00000551966 ABCA10Q8WWZ4 1543 aa39.38■■■■□ 3.89
SMARCD1-212ENST00000551966 ABCA5Q8WWZ7 1642 aa39.32■■■■□ 3.88
SMARCD1-212ENST00000551966 SUPT5HO00267 1087 aaKnown RBP39.27■■■■□ 3.88
SMARCD1-212ENST00000551966 WRNQ14191 1432 aaPredicted RBP eCLIP39.14■■■■□ 3.86
SMARCD1-212ENST00000551966 GRIN2AQ12879 1464 aa39.14■■■■□ 3.86
SMARCD1-212ENST00000551966 ERCC6L2Q5T890 1561 aa39.13■■■■□ 3.85
SMARCD1-212ENST00000551966 NUP160Q12769 1436 aa39.06■■■■□ 3.84
SMARCD1-212ENST00000551966 CEP170Q5SW79 1584 aa39.04■■■■□ 3.84
SMARCD1-212ENST00000551966 ADAMTS12P58397 1594 aa39.03■■■■□ 3.84
SMARCD1-212ENST00000551966 TOP2BQ02880 1626 aa39■■■■□ 3.83
SMARCD1-212ENST00000551966 BIVM-ERCC5R4GMW8 1640 aa38.98■■■■□ 3.83
SMARCD1-212ENST00000551966 FHAD1B1AJZ9 1412 aa38.97■■■■□ 3.83
SMARCD1-212ENST00000551966 AEBP2Q6ZN18 517 aaPredicted RBP38.91■■■■□ 3.82
SMARCD1-212ENST00000551966 SHROOM2Q13796 1616 aa38.89■■■■□ 3.82
SMARCD1-212ENST00000551966 ERICH3Q5RHP9 1530 aa38.84■■■■□ 3.81
SMARCD1-212ENST00000551966 JPH4Q96JJ6 628 aa38.73■■■■□ 3.79
SMARCD1-212ENST00000551966 PRG4Q92954 1404 aaPredicted RBP38.72■■■■□ 3.79
SMARCD1-212ENST00000551966 KIF13AQ9H1H9 1805 aa38.56■■■■□ 3.76
Retrieved 100 of 20,778 RNA–protein pairs in 182 ms