RNA–Protein interactions for RNA: ENST00000551920.1

GCN1-209, Transcript of GCN1, eIF2 alpha kinase activator homolog, humanhuman

TSL 3

Gene GCN1, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCN1-209ENST00000551920 NISCHQ9Y2I1 1504 aa39.76■■■■□ 3.96
GCN1-209ENST00000551920 CCDC180Q9P1Z9 1646 aa35.27■■■■□ 3.24
GCN1-209ENST00000551920 ABCC9O60706 1549 aa34.4■■■■□ 3.1
GCN1-209ENST00000551920 ZCCHC6Q5VYS8 1495 aaKnown RBP33.19■■■□□ 2.9
GCN1-209ENST00000551920 NACADO15069 1562 aa33.1■■■□□ 2.89
GCN1-209ENST00000551920 RB1CC1Q8TDY2 1594 aa33.1■■■□□ 2.89
GCN1-209ENST00000551920 DCAF8L2P0C7V8 631 aa33.03■■■□□ 2.88
GCN1-209ENST00000551920 MYO15BQ96JP2 1530 aa32.97■■■□□ 2.87
GCN1-209ENST00000551920 DCAF1Q9Y4B6 1507 aa32.89■■■□□ 2.86
GCN1-209ENST00000551920 UNC13AQ9UPW8 1703 aa32.4■■■□□ 2.78
GCN1-209ENST00000551920 SCRIBQ14160 1630 aa32.24■■■□□ 2.75
GCN1-209ENST00000551920 BICRAQ9NZM4 1560 aa32.19■■■□□ 2.74
GCN1-209ENST00000551920 PABPN1Q86U42 306 aaKnown RBP eCLIP32.14■■■□□ 2.74
GCN1-209ENST00000551920 SHROOM4Q9ULL8 1493 aa31.78■■■□□ 2.68
GCN1-209ENST00000551920 DNAJC5BQ9UF47 199 aa31.45■■■□□ 2.63
GCN1-209ENST00000551920 EIF4G1Q04637 1599 aaKnown RBP31.29■■■□□ 2.6
GCN1-209ENST00000551920 CC2D2AQ9P2K1 1620 aa31.12■■■□□ 2.57
GCN1-209ENST00000551920 CECR2Q9BXF3 1484 aa31.01■■■□□ 2.55
GCN1-209ENST00000551920 SMARCA4P51532 1647 aa30.84■■■□□ 2.53
GCN1-209ENST00000551920 BAZ1AQ9NRL2 1556 aaPredicted RBP30.79■■■□□ 2.52
GCN1-209ENST00000551920 MROH2BQ7Z745 1585 aa30.68■■■□□ 2.5
GCN1-209ENST00000551920 ATAD2BQ9ULI0 1458 aa30.63■■■□□ 2.49
GCN1-209ENST00000551920 NCAPD3P42695 1498 aa30.56■■■□□ 2.48
GCN1-209ENST00000551920 SMARCA2P51531 1590 aa30.55■■■□□ 2.48
GCN1-209ENST00000551920 PEG3Q9GZU2 1588 aa30.54■■■□□ 2.48
GCN1-209ENST00000551920 HMGXB3Q12766 1538 aa30.45■■■□□ 2.47
GCN1-209ENST00000551920 RSF1Q96T23 1441 aaPredicted RBP30.37■■■□□ 2.45
GCN1-209ENST00000551920 BAZ1BQ9UIG0 1483 aaKnown RBP30.36■■■□□ 2.45
GCN1-209ENST00000551920 WIZO95785 1651 aa30.33■■■□□ 2.45
GCN1-209ENST00000551920 TOP2AP11388 1531 aaKnown RBP30.02■■■□□ 2.4
GCN1-209ENST00000551920 NESP48681 1621 aa29.84■■■□□ 2.37
GCN1-209ENST00000551920 LAMC3Q9Y6N6 1575 aa29.72■■■□□ 2.35
GCN1-209ENST00000551920 CCDC88BA6NC98 1476 aa29.66■■■□□ 2.34
GCN1-209ENST00000551920 CADPSQ9ULU8 1353 aa29.65■■■□□ 2.34
GCN1-209ENST00000551920 SUPT5HO00267 1087 aaKnown RBP29.61■■■□□ 2.33
GCN1-209ENST00000551920 ERCC6Q03468 1493 aa29.58■■■□□ 2.33
GCN1-209ENST00000551920 CFTRP13569 1480 aa29.55■■■□□ 2.32
GCN1-209ENST00000551920 PDS5BQ9NTI5 1447 aa29.47■■■□□ 2.31
GCN1-209ENST00000551920 KIF21AQ7Z4S6 1674 aa29.46■■■□□ 2.31
GCN1-209ENST00000551920 THOC2Q8NI27 1593 aaKnown RBP29.37■■■□□ 2.29
GCN1-209ENST00000551920 FANCD2Q9BXW9 1451 aa29.35■■■□□ 2.29
GCN1-209ENST00000551920 PRDM2Q13029 1718 aa29.3■■■□□ 2.28
GCN1-209ENST00000551920 CEP164Q9UPV0 1460 aa29.29■■■□□ 2.28
GCN1-209ENST00000551920 CUX2O14529 1486 aa29.23■■■□□ 2.27
GCN1-209ENST00000551920 MRC2Q9UBG0 1479 aa29.23■■■□□ 2.27
GCN1-209ENST00000551920 WDR62O43379 1518 aa29.15■■■□□ 2.26
GCN1-209ENST00000551920 URB2Q14146 1524 aaKnown RBP29.09■■■□□ 2.25
GCN1-209ENST00000551920 TOPBP1Q92547 1522 aa28.91■■■□□ 2.22
GCN1-209ENST00000551920 DNMBPQ6XZF7 1577 aa28.88■■■□□ 2.21
GCN1-209ENST00000551920 ABCC8Q09428 1581 aa28.81■■■□□ 2.2
GCN1-209ENST00000551920 CUX1P39880 1505 aa28.78■■■□□ 2.2
GCN1-209ENST00000551920 POLA1P09884 1462 aaPredicted RBP28.69■■■□□ 2.18
GCN1-209ENST00000551920 IFT140Q96RY7 1462 aa28.66■■■□□ 2.18
GCN1-209ENST00000551920 FGD5Q6ZNL6 1462 aa28.63■■■□□ 2.17
GCN1-209ENST00000551920 TARBP1Q13395 1621 aaKnown RBP28.61■■■□□ 2.17
GCN1-209ENST00000551920 WRNQ14191 1432 aaPredicted RBP eCLIP28.59■■■□□ 2.17
GCN1-209ENST00000551920 ZNF608Q9ULD9 1512 aaPredicted RBP28.59■■■□□ 2.17
GCN1-209ENST00000551920 SYNJ1O43426 1573 aa28.58■■■□□ 2.17
GCN1-209ENST00000551920 RAD54L2Q9Y4B4 1467 aa28.56■■■□□ 2.16
GCN1-209ENST00000551920 BIVM-ERCC5R4GMW8 1640 aa28.54■■■□□ 2.16
GCN1-209ENST00000551920 TOP2BQ02880 1626 aa28.53■■■□□ 2.16
GCN1-209ENST00000551920 SOGA1O94964 1423 aa28.5■■■□□ 2.15
GCN1-209ENST00000551920 EIF4G3O43432 1585 aaKnown RBP28.47■■■□□ 2.15
GCN1-209ENST00000551920 WDR97A6NE52 1622 aa28.42■■■□□ 2.14
GCN1-209ENST00000551920 AQRO60306 1485 aaKnown RBP eCLIP28.4■■■□□ 2.141e-7■■■■■ 28.6
GCN1-209ENST00000551920 TDRD9Q8NDG6 1382 aaKnown RBP28.36■■■□□ 2.13
GCN1-209ENST00000551920 ABCA10Q8WWZ4 1543 aa28.35■■■□□ 2.13
GCN1-209ENST00000551920 ABCA5Q8WWZ7 1642 aa28.26■■■□□ 2.11
GCN1-209ENST00000551920 GAPVD1Q14C86 1478 aa28.21■■■□□ 2.11
GCN1-209ENST00000551920 GRIN2BQ13224 1484 aa28.17■■■□□ 2.1
GCN1-209ENST00000551920 SNAPC4Q5SXM2 1469 aa28.16■■■□□ 2.1
GCN1-209ENST00000551920 PBRM1Q86U86 1689 aa28.15■■■□□ 2.1
GCN1-209ENST00000551920 DNAJC5Q9H3Z4 198 aa28.12■■■□□ 2.09
GCN1-209ENST00000551920 MAGI1Q96QZ7 1491 aaPredicted RBP28.09■■■□□ 2.09
GCN1-209ENST00000551920 CHD1O14646 1710 aa28.04■■■□□ 2.08
GCN1-209ENST00000551920 ERICH3Q5RHP9 1530 aa27.99■■■□□ 2.07
GCN1-209ENST00000551920 ADAMTS12P58397 1594 aa27.99■■■□□ 2.07
GCN1-209ENST00000551920 SYNJ2O15056 1496 aa27.98■■■□□ 2.07
GCN1-209ENST00000551920 OSCARQ8IYS5 282 aa27.96■■■□□ 2.07
GCN1-209ENST00000551920 KIF27Q86VH2 1401 aa27.95■■■□□ 2.07
GCN1-209ENST00000551920 FBLN2P98095 1184 aa27.93■■■□□ 2.06
GCN1-209ENST00000551920 TRIM41Q8WV44 630 aa27.92■■■□□ 2.06
GCN1-209ENST00000551920 FHAD1B1AJZ9 1412 aa27.87■■■□□ 2.05
GCN1-209ENST00000551920 CHMP7Q8WUX9 453 aaPredicted RBP27.87■■■□□ 2.05
GCN1-209ENST00000551920 IGF1RP08069 1367 aa27.85■■■□□ 2.05
GCN1-209ENST00000551920 GRIN2AQ12879 1464 aa27.84■■■□□ 2.05
GCN1-209ENST00000551920 RUSC2Q8N2Y8 1516 aa27.83■■■□□ 2.05
GCN1-209ENST00000551920 CLASP1Q7Z460 1538 aa27.79■■■□□ 2.04
GCN1-209ENST00000551920 CUL7Q14999 1698 aa27.76■■■□□ 2.03
GCN1-209ENST00000551920 CHIC1Q5VXU3 224 aa27.75■■■□□ 2.03
GCN1-209ENST00000551920 CEP170Q5SW79 1584 aa27.73■■■□□ 2.03
GCN1-209ENST00000551920 NUP160Q12769 1436 aa27.73■■■□□ 2.03
GCN1-209ENST00000551920 CARMIL1Q5VZK9 1371 aa27.66■■■□□ 2.02
GCN1-209ENST00000551920 ARHGEF11O15085 1522 aa27.63■■■□□ 2.01
GCN1-209ENST00000551920 RIMBP3CA6NJZ7 1639 aa27.61■■■□□ 2.01
GCN1-209ENST00000551920 RIMBP3BA6NNM3 1639 aa27.61■■■□□ 2.01
GCN1-209ENST00000551920 RIMBP3Q9UFD9 1639 aa27.61■■■□□ 2.01
GCN1-209ENST00000551920 RAPGEF2Q9Y4G8 1499 aa27.52■■■□□ 2
GCN1-209ENST00000551920 PRXQ9BXM0 1461 aa27.51■■■□□ 2
GCN1-209ENST00000551920 SHROOM2Q13796 1616 aa27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms