RNA–Protein interactions for RNA: ENST00000551716.5

CACNB3-220, Transcript of calcium voltage-gated channel auxiliary subunit beta 3, humanhuman

TSL 3

Gene CACNB3, Length 544 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNB3-220ENST00000551716 NISCHQ9Y2I1 1504 aa38.99■■■■□ 3.83
CACNB3-220ENST00000551716 ABCC9O60706 1549 aa35.88■■■■□ 3.33
CACNB3-220ENST00000551716 CCDC180Q9P1Z9 1646 aa35.19■■■■□ 3.22
CACNB3-220ENST00000551716 DNAJC5BQ9UF47 199 aa34.3■■■■□ 3.08
CACNB3-220ENST00000551716 RB1CC1Q8TDY2 1594 aa33.9■■■■□ 3.02
CACNB3-220ENST00000551716 NACADO15069 1562 aa33.55■■■□□ 2.96
CACNB3-220ENST00000551716 PABPN1Q86U42 306 aaKnown RBP eCLIP33.38■■■□□ 2.93
CACNB3-220ENST00000551716 DCAF8L2P0C7V8 631 aa33.33■■■□□ 2.93
CACNB3-220ENST00000551716 MYO15BQ96JP2 1530 aa32.91■■■□□ 2.86
CACNB3-220ENST00000551716 UNC13AQ9UPW8 1703 aa32.88■■■□□ 2.85
CACNB3-220ENST00000551716 BICRAQ9NZM4 1560 aa32.83■■■□□ 2.85
CACNB3-220ENST00000551716 SHROOM4Q9ULL8 1493 aa32.51■■■□□ 2.79
CACNB3-220ENST00000551716 CECR2Q9BXF3 1484 aa32.45■■■□□ 2.79
CACNB3-220ENST00000551716 CC2D2AQ9P2K1 1620 aa32.34■■■□□ 2.77
CACNB3-220ENST00000551716 DCAF1Q9Y4B6 1507 aa32.21■■■□□ 2.75
CACNB3-220ENST00000551716 EIF4G1Q04637 1599 aaKnown RBP32.13■■■□□ 2.73
CACNB3-220ENST00000551716 ZCCHC6Q5VYS8 1495 aaKnown RBP32.13■■■□□ 2.73
CACNB3-220ENST00000551716 DNAJC5Q9H3Z4 198 aa32.11■■■□□ 2.73
CACNB3-220ENST00000551716 SCRIBQ14160 1630 aa31.98■■■□□ 2.71
CACNB3-220ENST00000551716 CUX2O14529 1486 aa31.28■■■□□ 2.6
CACNB3-220ENST00000551716 ERCC6Q03468 1493 aa31.1■■■□□ 2.57
CACNB3-220ENST00000551716 NCAPD3P42695 1498 aa31.02■■■□□ 2.56
CACNB3-220ENST00000551716 ATAD2BQ9ULI0 1458 aa30.77■■■□□ 2.52
CACNB3-220ENST00000551716 SMARCA2P51531 1590 aa30.66■■■□□ 2.5
CACNB3-220ENST00000551716 HMGXB3Q12766 1538 aa30.63■■■□□ 2.49
CACNB3-220ENST00000551716 NESP48681 1621 aa30.59■■■□□ 2.49
CACNB3-220ENST00000551716 SMARCA4P51532 1647 aa30.48■■■□□ 2.47
CACNB3-220ENST00000551716 BAZ1BQ9UIG0 1483 aaKnown RBP30.44■■■□□ 2.46
CACNB3-220ENST00000551716 THOC2Q8NI27 1593 aaKnown RBP30.37■■■□□ 2.45
CACNB3-220ENST00000551716 TRIM41Q8WV44 630 aa30.36■■■□□ 2.45
CACNB3-220ENST00000551716 LAMC3Q9Y6N6 1575 aa30.35■■■□□ 2.45
CACNB3-220ENST00000551716 BAZ1AQ9NRL2 1556 aaPredicted RBP30.32■■■□□ 2.44
CACNB3-220ENST00000551716 PDS5BQ9NTI5 1447 aa30.31■■■□□ 2.44
CACNB3-220ENST00000551716 PEG3Q9GZU2 1588 aa30.24■■■□□ 2.43
CACNB3-220ENST00000551716 KIF21AQ7Z4S6 1674 aa30.08■■■□□ 2.41
CACNB3-220ENST00000551716 CADPSQ9ULU8 1353 aa30.06■■■□□ 2.4
CACNB3-220ENST00000551716 MRC2Q9UBG0 1479 aa29.99■■■□□ 2.39
CACNB3-220ENST00000551716 MROH2BQ7Z745 1585 aa29.98■■■□□ 2.39
CACNB3-220ENST00000551716 WDR62O43379 1518 aa29.89■■■□□ 2.38
CACNB3-220ENST00000551716 OSCARQ8IYS5 282 aa29.87■■■□□ 2.37
CACNB3-220ENST00000551716 CEP164Q9UPV0 1460 aa29.74■■■□□ 2.35
CACNB3-220ENST00000551716 FANCD2Q9BXW9 1451 aa29.65■■■□□ 2.34
CACNB3-220ENST00000551716 CFTRP13569 1480 aa29.53■■■□□ 2.32
CACNB3-220ENST00000551716 WIZO95785 1651 aa29.52■■■□□ 2.32
CACNB3-220ENST00000551716 URB2Q14146 1524 aaKnown RBP29.39■■■□□ 2.3
CACNB3-220ENST00000551716 RIMBP3CA6NJZ7 1639 aa29.29■■■□□ 2.28
CACNB3-220ENST00000551716 RIMBP3BA6NNM3 1639 aa29.29■■■□□ 2.28
CACNB3-220ENST00000551716 RIMBP3Q9UFD9 1639 aa29.29■■■□□ 2.28
CACNB3-220ENST00000551716 IFT140Q96RY7 1462 aa29.21■■■□□ 2.27
CACNB3-220ENST00000551716 ARHGEF11O15085 1522 aa29.2■■■□□ 2.26
CACNB3-220ENST00000551716 RSF1Q96T23 1441 aaPredicted RBP29.2■■■□□ 2.26
CACNB3-220ENST00000551716 TOP2AP11388 1531 aaKnown RBP29.19■■■□□ 2.26
CACNB3-220ENST00000551716 CYB5RLQ6IPT4 315 aa29.16■■■□□ 2.26
CACNB3-220ENST00000551716 ZNF608Q9ULD9 1512 aaPredicted RBP29.13■■■□□ 2.25
CACNB3-220ENST00000551716 TRHP20396 242 aaPredicted RBP29.07■■■□□ 2.24
CACNB3-220ENST00000551716 ABCC8Q09428 1581 aa29.01■■■□□ 2.24
CACNB3-220ENST00000551716 TOPBP1Q92547 1522 aa28.98■■■□□ 2.23
CACNB3-220ENST00000551716 PRDM2Q13029 1718 aa28.96■■■□□ 2.23
CACNB3-220ENST00000551716 CCDC88BA6NC98 1476 aa28.91■■■□□ 2.22
CACNB3-220ENST00000551716 FBLN2P98095 1184 aa28.89■■■□□ 2.22
CACNB3-220ENST00000551716 EIF4G3O43432 1585 aaKnown RBP28.88■■■□□ 2.21
CACNB3-220ENST00000551716 AQRO60306 1485 aaKnown RBP eCLIP28.85■■■□□ 2.21
CACNB3-220ENST00000551716 ARAP1Q96P48 1450 aa28.85■■■□□ 2.21
CACNB3-220ENST00000551716 DNMBPQ6XZF7 1577 aa28.79■■■□□ 2.2
CACNB3-220ENST00000551716 AEBP2Q6ZN18 517 aaPredicted RBP28.76■■■□□ 2.19
CACNB3-220ENST00000551716 CHD1O14646 1710 aa28.72■■■□□ 2.19
CACNB3-220ENST00000551716 TARBP1Q13395 1621 aaKnown RBP28.72■■■□□ 2.19
CACNB3-220ENST00000551716 POLA1P09884 1462 aaPredicted RBP28.65■■■□□ 2.18
CACNB3-220ENST00000551716 CHMP7Q8WUX9 453 aaPredicted RBP28.61■■■□□ 2.17
CACNB3-220ENST00000551716 SOGA1O94964 1423 aa28.6■■■□□ 2.17
CACNB3-220ENST00000551716 TDRD9Q8NDG6 1382 aaKnown RBP28.59■■■□□ 2.17
CACNB3-220ENST00000551716 RAD54L2Q9Y4B4 1467 aa28.53■■■□□ 2.16
CACNB3-220ENST00000551716 CLASP1Q7Z460 1538 aa28.48■■■□□ 2.15
CACNB3-220ENST00000551716 SNAPC4Q5SXM2 1469 aa28.48■■■□□ 2.15
CACNB3-220ENST00000551716 WDR97A6NE52 1622 aa28.47■■■□□ 2.15
CACNB3-220ENST00000551716 SYNJ1O43426 1573 aa28.47■■■□□ 2.15
CACNB3-220ENST00000551716 MAGI1Q96QZ7 1491 aaPredicted RBP28.46■■■□□ 2.15
CACNB3-220ENST00000551716 GRIN2BQ13224 1484 aa28.4■■■□□ 2.14
CACNB3-220ENST00000551716 SYNJ2O15056 1496 aa28.37■■■□□ 2.13
CACNB3-220ENST00000551716 FGD5Q6ZNL6 1462 aa28.36■■■□□ 2.13
CACNB3-220ENST00000551716 GAPVD1Q14C86 1478 aa28.32■■■□□ 2.12
CACNB3-220ENST00000551716 CUX1P39880 1505 aa28.2■■■□□ 2.1
CACNB3-220ENST00000551716 ABCA10Q8WWZ4 1543 aa28.04■■■□□ 2.08
CACNB3-220ENST00000551716 PBRM1Q86U86 1689 aa28.03■■■□□ 2.08
CACNB3-220ENST00000551716 GRIN2AQ12879 1464 aa27.99■■■□□ 2.07
CACNB3-220ENST00000551716 ABCA5Q8WWZ7 1642 aa27.96■■■□□ 2.07
CACNB3-220ENST00000551716 NUP160Q12769 1436 aa27.93■■■□□ 2.06
CACNB3-220ENST00000551716 ERCC6L2Q5T890 1561 aa27.93■■■□□ 2.06
CACNB3-220ENST00000551716 CEP170Q5SW79 1584 aa27.9■■■□□ 2.06
CACNB3-220ENST00000551716 WRNQ14191 1432 aaPredicted RBP eCLIP27.88■■■□□ 2.05
CACNB3-220ENST00000551716 FHAD1B1AJZ9 1412 aa27.84■■■□□ 2.05
CACNB3-220ENST00000551716 SHROOM2Q13796 1616 aa27.8■■■□□ 2.04
CACNB3-220ENST00000551716 ADAMTS12P58397 1594 aa27.79■■■□□ 2.04
CACNB3-220ENST00000551716 NPM1P06748 294 aaKnown RBP eCLIP27.79■■■□□ 2.04
CACNB3-220ENST00000551716 JPH4Q96JJ6 628 aa27.77■■■□□ 2.04
CACNB3-220ENST00000551716 FAM69CQ0P6D2 419 aa27.76■■■□□ 2.03
CACNB3-220ENST00000551716 PRG4Q92954 1404 aaPredicted RBP27.75■■■□□ 2.03
CACNB3-220ENST00000551716 KIF13AQ9H1H9 1805 aa27.7■■■□□ 2.02
CACNB3-220ENST00000551716 ABCC10Q5T3U5 1492 aa27.69■■■□□ 2.02
CACNB3-220ENST00000551716 ERICH3Q5RHP9 1530 aa27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms