RNA–Protein interactions for RNA: ENST00000551418.5

PRPF40B-215, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-215ENST00000551418 NISCHQ9Y2I1 1504 aa45.08■■■■■ 4.81
PRPF40B-215ENST00000551418 ABCC9O60706 1549 aa40.62■■■■■ 4.09
PRPF40B-215ENST00000551418 CCDC180Q9P1Z9 1646 aa40.39■■■■■ 4.06
PRPF40B-215ENST00000551418 RB1CC1Q8TDY2 1594 aa38.5■■■■□ 3.75
PRPF40B-215ENST00000551418 DNAJC5BQ9UF47 199 aa38.3■■■■□ 3.72
PRPF40B-215ENST00000551418 NACADO15069 1562 aa38.22■■■■□ 3.71
PRPF40B-215ENST00000551418 DCAF8L2P0C7V8 631 aa38.19■■■■□ 3.7
PRPF40B-215ENST00000551418 PABPN1Q86U42 306 aaKnown RBP eCLIP37.87■■■■□ 3.65
PRPF40B-215ENST00000551418 UNC13AQ9UPW8 1703 aa37.76■■■■□ 3.64
PRPF40B-215ENST00000551418 MYO15BQ96JP2 1530 aa37.62■■■■□ 3.61
PRPF40B-215ENST00000551418 BICRAQ9NZM4 1560 aa37.51■■■■□ 3.59
PRPF40B-215ENST00000551418 ZCCHC6Q5VYS8 1495 aaKnown RBP37.33■■■■□ 3.57
PRPF40B-215ENST00000551418 DCAF1Q9Y4B6 1507 aa37.14■■■■□ 3.54
PRPF40B-215ENST00000551418 SCRIBQ14160 1630 aa36.93■■■■□ 3.5
PRPF40B-215ENST00000551418 SHROOM4Q9ULL8 1493 aa36.75■■■■□ 3.47
PRPF40B-215ENST00000551418 CC2D2AQ9P2K1 1620 aa36.65■■■■□ 3.46
PRPF40B-215ENST00000551418 CECR2Q9BXF3 1484 aa36.55■■■■□ 3.44
PRPF40B-215ENST00000551418 EIF4G1Q04637 1599 aaKnown RBP36.53■■■■□ 3.44
PRPF40B-215ENST00000551418 NCAPD3P42695 1498 aa35.33■■■■□ 3.25
PRPF40B-215ENST00000551418 ATAD2BQ9ULI0 1458 aa35.24■■■■□ 3.23
PRPF40B-215ENST00000551418 SMARCA4P51532 1647 aa35.17■■■■□ 3.22
PRPF40B-215ENST00000551418 DNAJC5Q9H3Z4 198 aa35.08■■■■□ 3.21
PRPF40B-215ENST00000551418 SMARCA2P51531 1590 aa35.06■■■■□ 3.2
PRPF40B-215ENST00000551418 HMGXB3Q12766 1538 aa35.01■■■■□ 3.19
PRPF40B-215ENST00000551418 ERCC6Q03468 1493 aa34.98■■■■□ 3.19
PRPF40B-215ENST00000551418 BAZ1AQ9NRL2 1556 aaPredicted RBP34.94■■■■□ 3.18
PRPF40B-215ENST00000551418 NESP48681 1621 aa34.92■■■■□ 3.18
PRPF40B-215ENST00000551418 CUX2O14529 1486 aa34.9■■■■□ 3.18
PRPF40B-215ENST00000551418 BAZ1BQ9UIG0 1483 aaKnown RBP34.86■■■■□ 3.17
PRPF40B-215ENST00000551418 MROH2BQ7Z745 1585 aa34.8■■■■□ 3.16
PRPF40B-215ENST00000551418 PEG3Q9GZU2 1588 aa34.79■■■■□ 3.16
PRPF40B-215ENST00000551418 LAMC3Q9Y6N6 1575 aa34.49■■■■□ 3.11
PRPF40B-215ENST00000551418 THOC2Q8NI27 1593 aaKnown RBP34.48■■■■□ 3.11
PRPF40B-215ENST00000551418 KIF21AQ7Z4S6 1674 aa34.41■■■■□ 3.1
PRPF40B-215ENST00000551418 WIZO95785 1651 aa34.39■■■■□ 3.1
PRPF40B-215ENST00000551418 PDS5BQ9NTI5 1447 aa34.3■■■■□ 3.08
PRPF40B-215ENST00000551418 CADPSQ9ULU8 1353 aa34.26■■■■□ 3.08
PRPF40B-215ENST00000551418 MRC2Q9UBG0 1479 aa34.04■■■■□ 3.04
PRPF40B-215ENST00000551418 RSF1Q96T23 1441 aaPredicted RBP34.04■■■■□ 3.04
PRPF40B-215ENST00000551418 WDR62O43379 1518 aa33.96■■■■□ 3.03
PRPF40B-215ENST00000551418 FANCD2Q9BXW9 1451 aa33.88■■■■□ 3.01
PRPF40B-215ENST00000551418 CEP164Q9UPV0 1460 aa33.88■■■■□ 3.01
PRPF40B-215ENST00000551418 TOP2AP11388 1531 aaKnown RBP33.85■■■■□ 3.01
PRPF40B-215ENST00000551418 CFTRP13569 1480 aa33.85■■■■□ 3.01
PRPF40B-215ENST00000551418 URB2Q14146 1524 aaKnown RBP33.66■■■□□ 2.98
PRPF40B-215ENST00000551418 TRIM41Q8WV44 630 aa33.56■■■□□ 2.96
PRPF40B-215ENST00000551418 CCDC88BA6NC98 1476 aa33.55■■■□□ 2.96
PRPF40B-215ENST00000551418 PRDM2Q13029 1718 aa33.47■■■□□ 2.95
PRPF40B-215ENST00000551418 OSCARQ8IYS5 282 aa33.38■■■□□ 2.93
PRPF40B-215ENST00000551418 ZNF608Q9ULD9 1512 aaPredicted RBP33.28■■■□□ 2.92
PRPF40B-215ENST00000551418 TOPBP1Q92547 1522 aa33.25■■■□□ 2.91
PRPF40B-215ENST00000551418 IFT140Q96RY7 1462 aa33.21■■■□□ 2.91
PRPF40B-215ENST00000551418 DNMBPQ6XZF7 1577 aa33.08■■■□□ 2.89
PRPF40B-215ENST00000551418 ABCC8Q09428 1581 aa33.05■■■□□ 2.88
PRPF40B-215ENST00000551418 EIF4G3O43432 1585 aaKnown RBP33.01■■■□□ 2.88
PRPF40B-215ENST00000551418 RIMBP3CA6NJZ7 1639 aa32.97■■■□□ 2.87
PRPF40B-215ENST00000551418 RIMBP3BA6NNM3 1639 aa32.97■■■□□ 2.87
PRPF40B-215ENST00000551418 RIMBP3Q9UFD9 1639 aa32.97■■■□□ 2.87
PRPF40B-215ENST00000551418 AQRO60306 1485 aaKnown RBP eCLIP32.97■■■□□ 2.87
PRPF40B-215ENST00000551418 TARBP1Q13395 1621 aaKnown RBP32.96■■■□□ 2.87
PRPF40B-215ENST00000551418 POLA1P09884 1462 aaPredicted RBP32.9■■■□□ 2.86
PRPF40B-215ENST00000551418 RAD54L2Q9Y4B4 1467 aa32.86■■■□□ 2.85
PRPF40B-215ENST00000551418 ARHGEF11O15085 1522 aa32.83■■■□□ 2.85
PRPF40B-215ENST00000551418 CHD1O14646 1710 aa32.82■■■□□ 2.85
PRPF40B-215ENST00000551418 TDRD9Q8NDG6 1382 aaKnown RBP32.76■■■□□ 2.83
PRPF40B-215ENST00000551418 SOGA1O94964 1423 aa32.76■■■□□ 2.83
PRPF40B-215ENST00000551418 FBLN2P98095 1184 aa32.75■■■□□ 2.83
PRPF40B-215ENST00000551418 FGD5Q6ZNL6 1462 aa32.69■■■□□ 2.82
PRPF40B-215ENST00000551418 CUX1P39880 1505 aa32.68■■■□□ 2.82
PRPF40B-215ENST00000551418 CYB5RLQ6IPT4 315 aa32.67■■■□□ 2.82
PRPF40B-215ENST00000551418 SNAPC4Q5SXM2 1469 aa32.57■■■□□ 2.8
PRPF40B-215ENST00000551418 SUPT5HO00267 1087 aaKnown RBP32.56■■■□□ 2.8
PRPF40B-215ENST00000551418 ARAP1Q96P48 1450 aa32.54■■■□□ 2.8
PRPF40B-215ENST00000551418 WDR97A6NE52 1622 aa32.47■■■□□ 2.79
PRPF40B-215ENST00000551418 CHMP7Q8WUX9 453 aaPredicted RBP32.45■■■□□ 2.79
PRPF40B-215ENST00000551418 GRIN2BQ13224 1484 aa32.43■■■□□ 2.78
PRPF40B-215ENST00000551418 MAGI1Q96QZ7 1491 aaPredicted RBP32.42■■■□□ 2.78
PRPF40B-215ENST00000551418 CLASP1Q7Z460 1538 aa32.41■■■□□ 2.78
PRPF40B-215ENST00000551418 GAPVD1Q14C86 1478 aa32.34■■■□□ 2.77
PRPF40B-215ENST00000551418 SYNJ2O15056 1496 aa32.33■■■□□ 2.77
PRPF40B-215ENST00000551418 PBRM1Q86U86 1689 aa32.33■■■□□ 2.77
PRPF40B-215ENST00000551418 SYNJ1O43426 1573 aa32.32■■■□□ 2.77
PRPF40B-215ENST00000551418 TRHP20396 242 aaPredicted RBP32.29■■■□□ 2.76
PRPF40B-215ENST00000551418 ABCA10Q8WWZ4 1543 aa32.28■■■□□ 2.76
PRPF40B-215ENST00000551418 ABCA5Q8WWZ7 1642 aa32.26■■■□□ 2.75
PRPF40B-215ENST00000551418 WRNQ14191 1432 aaPredicted RBP eCLIP32.12■■■□□ 2.73
PRPF40B-215ENST00000551418 BIVM-ERCC5R4GMW8 1640 aa32.08■■■□□ 2.73
PRPF40B-215ENST00000551418 TOP2BQ02880 1626 aa32.08■■■□□ 2.73
PRPF40B-215ENST00000551418 GRIN2AQ12879 1464 aa32.03■■■□□ 2.72
PRPF40B-215ENST00000551418 ERCC6L2Q5T890 1561 aa32.02■■■□□ 2.72
PRPF40B-215ENST00000551418 ADAMTS12P58397 1594 aa32■■■□□ 2.71
PRPF40B-215ENST00000551418 CEP170Q5SW79 1584 aa31.97■■■□□ 2.71
PRPF40B-215ENST00000551418 NUP160Q12769 1436 aa31.93■■■□□ 2.7
PRPF40B-215ENST00000551418 FHAD1B1AJZ9 1412 aa31.91■■■□□ 2.7
PRPF40B-215ENST00000551418 ERICH3Q5RHP9 1530 aa31.84■■■□□ 2.69
PRPF40B-215ENST00000551418 SHROOM2Q13796 1616 aa31.8■■■□□ 2.68
PRPF40B-215ENST00000551418 PRG4Q92954 1404 aaPredicted RBP31.66■■■□□ 2.66
PRPF40B-215ENST00000551418 JPH4Q96JJ6 628 aa31.66■■■□□ 2.66
PRPF40B-215ENST00000551418 RUSC2Q8N2Y8 1516 aa31.55■■■□□ 2.64
PRPF40B-215ENST00000551418 IGF1RP08069 1367 aa31.52■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms