RNA–Protein interactions for RNA: ENST00000551352.1

SMARCD1-210, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-210ENST00000551352 NISCHQ9Y2I1 1504 aa18.21■□□□□ 0.51
SMARCD1-210ENST00000551352 CCDC180Q9P1Z9 1646 aa16.42■□□□□ 0.22
SMARCD1-210ENST00000551352 ABCC9O60706 1549 aa16.37■□□□□ 0.21
SMARCD1-210ENST00000551352 RB1CC1Q8TDY2 1594 aa15.55■□□□□ 0.08
SMARCD1-210ENST00000551352 UNC13AQ9UPW8 1703 aa15.46■□□□□ 0.06
SMARCD1-210ENST00000551352 NACADO15069 1562 aa15.44■□□□□ 0.06
SMARCD1-210ENST00000551352 DNAJC5BQ9UF47 199 aa15.42■□□□□ 0.06
SMARCD1-210ENST00000551352 BICRAQ9NZM4 1560 aa15.24■□□□□ 0.03
SMARCD1-210ENST00000551352 MYO15BQ96JP2 1530 aa15.22■□□□□ 0.03
SMARCD1-210ENST00000551352 DCAF8L2P0C7V8 631 aa15.17■□□□□ 0.02
SMARCD1-210ENST00000551352 PABPN1Q86U42 306 aaKnown RBP eCLIP15.17■□□□□ 0.02
SMARCD1-210ENST00000551352 ZCCHC6Q5VYS8 1495 aaKnown RBP15.11■□□□□ 0.01
SMARCD1-210ENST00000551352 DCAF1Q9Y4B6 1507 aa15.03■□□□□ -0
SMARCD1-210ENST00000551352 SCRIBQ14160 1630 aa14.95□□□□□ -0.02
SMARCD1-210ENST00000551352 SHROOM4Q9ULL8 1493 aa14.86□□□□□ -0.03
SMARCD1-210ENST00000551352 CC2D2AQ9P2K1 1620 aa14.84□□□□□ -0.03
SMARCD1-210ENST00000551352 EIF4G1Q04637 1599 aaKnown RBP14.79□□□□□ -0.04
SMARCD1-210ENST00000551352 CECR2Q9BXF3 1484 aa14.71□□□□□ -0.05
SMARCD1-210ENST00000551352 SMARCA4P51532 1647 aa14.26□□□□□ -0.13
SMARCD1-210ENST00000551352 NCAPD3P42695 1498 aa14.24□□□□□ -0.13
SMARCD1-210ENST00000551352 ATAD2BQ9ULI0 1458 aa14.22□□□□□ -0.13
SMARCD1-210ENST00000551352 HMGXB3Q12766 1538 aa14.18□□□□□ -0.14
SMARCD1-210ENST00000551352 SMARCA2P51531 1590 aa14.14□□□□□ -0.15
SMARCD1-210ENST00000551352 PEG3Q9GZU2 1588 aa14.12□□□□□ -0.15
SMARCD1-210ENST00000551352 NESP48681 1621 aa14.11□□□□□ -0.15
SMARCD1-210ENST00000551352 BAZ1AQ9NRL2 1556 aaPredicted RBP14.1□□□□□ -0.15
SMARCD1-210ENST00000551352 CUX2O14529 1486 aa14.07□□□□□ -0.16
SMARCD1-210ENST00000551352 MROH2BQ7Z745 1585 aa14.07□□□□□ -0.16
SMARCD1-210ENST00000551352 DNAJC5Q9H3Z4 198 aa14.06□□□□□ -0.16
SMARCD1-210ENST00000551352 BAZ1BQ9UIG0 1483 aaKnown RBP14.04□□□□□ -0.16
SMARCD1-210ENST00000551352 ERCC6Q03468 1493 aa14.03□□□□□ -0.16
SMARCD1-210ENST00000551352 THOC2Q8NI27 1593 aaKnown RBP14.03□□□□□ -0.16
SMARCD1-210ENST00000551352 KIF21AQ7Z4S6 1674 aa14.01□□□□□ -0.17
SMARCD1-210ENST00000551352 LAMC3Q9Y6N6 1575 aa13.96□□□□□ -0.18
SMARCD1-210ENST00000551352 WIZO95785 1651 aa13.95□□□□□ -0.18
SMARCD1-210ENST00000551352 PDS5BQ9NTI5 1447 aa13.76□□□□□ -0.21
SMARCD1-210ENST00000551352 CADPSQ9ULU8 1353 aa13.76□□□□□ -0.21
SMARCD1-210ENST00000551352 WDR62O43379 1518 aa13.75□□□□□ -0.21
SMARCD1-210ENST00000551352 MRC2Q9UBG0 1479 aa13.73□□□□□ -0.21
SMARCD1-210ENST00000551352 RSF1Q96T23 1441 aaPredicted RBP13.71□□□□□ -0.22
SMARCD1-210ENST00000551352 PRDM2Q13029 1718 aa13.7□□□□□ -0.22
SMARCD1-210ENST00000551352 TOP2AP11388 1531 aaKnown RBP13.69□□□□□ -0.22
SMARCD1-210ENST00000551352 CFTRP13569 1480 aa13.65□□□□□ -0.22
SMARCD1-210ENST00000551352 FANCD2Q9BXW9 1451 aa13.65□□□□□ -0.22
SMARCD1-210ENST00000551352 CEP164Q9UPV0 1460 aa13.65□□□□□ -0.22
SMARCD1-210ENST00000551352 URB2Q14146 1524 aaKnown RBP13.61□□□□□ -0.23
SMARCD1-210ENST00000551352 CCDC88BA6NC98 1476 aa13.53□□□□□ -0.24
SMARCD1-210ENST00000551352 ZNF608Q9ULD9 1512 aaPredicted RBP13.44□□□□□ -0.26
SMARCD1-210ENST00000551352 TOPBP1Q92547 1522 aa13.43□□□□□ -0.26
SMARCD1-210ENST00000551352 EIF4G3O43432 1585 aaKnown RBP13.4□□□□□ -0.26
SMARCD1-210ENST00000551352 TRIM41Q8WV44 630 aa13.39□□□□□ -0.27
SMARCD1-210ENST00000551352 TARBP1Q13395 1621 aaKnown RBP13.39□□□□□ -0.27
SMARCD1-210ENST00000551352 DNMBPQ6XZF7 1577 aa13.38□□□□□ -0.27
SMARCD1-210ENST00000551352 RIMBP3CA6NJZ7 1639 aa13.37□□□□□ -0.27
SMARCD1-210ENST00000551352 RIMBP3BA6NNM3 1639 aa13.37□□□□□ -0.27
SMARCD1-210ENST00000551352 RIMBP3Q9UFD9 1639 aa13.37□□□□□ -0.27
SMARCD1-210ENST00000551352 IFT140Q96RY7 1462 aa13.36□□□□□ -0.27
SMARCD1-210ENST00000551352 CHD1O14646 1710 aa13.36□□□□□ -0.27
SMARCD1-210ENST00000551352 OSCARQ8IYS5 282 aa13.31□□□□□ -0.28
SMARCD1-210ENST00000551352 POLA1P09884 1462 aaPredicted RBP13.29□□□□□ -0.28
SMARCD1-210ENST00000551352 ABCC8Q09428 1581 aa13.28□□□□□ -0.28
SMARCD1-210ENST00000551352 ARHGEF11O15085 1522 aa13.26□□□□□ -0.29
SMARCD1-210ENST00000551352 AQRO60306 1485 aaKnown RBP eCLIP13.26□□□□□ -0.294e-7■■■■■ 42.5
SMARCD1-210ENST00000551352 WDR97A6NE52 1622 aa13.25□□□□□ -0.29
SMARCD1-210ENST00000551352 RAD54L2Q9Y4B4 1467 aa13.24□□□□□ -0.29
SMARCD1-210ENST00000551352 CUX1P39880 1505 aa13.23□□□□□ -0.29
SMARCD1-210ENST00000551352 FGD5Q6ZNL6 1462 aa13.19□□□□□ -0.3
SMARCD1-210ENST00000551352 PBRM1Q86U86 1689 aa13.17□□□□□ -0.3
SMARCD1-210ENST00000551352 ARAP1Q96P48 1450 aa13.16□□□□□ -0.3
SMARCD1-210ENST00000551352 CLASP1Q7Z460 1538 aa13.15□□□□□ -0.3
SMARCD1-210ENST00000551352 TDRD9Q8NDG6 1382 aaKnown RBP13.14□□□□□ -0.31
SMARCD1-210ENST00000551352 SNAPC4Q5SXM2 1469 aa13.14□□□□□ -0.31
SMARCD1-210ENST00000551352 SOGA1O94964 1423 aa13.13□□□□□ -0.31
SMARCD1-210ENST00000551352 ABCA5Q8WWZ7 1642 aa13.1□□□□□ -0.31
SMARCD1-210ENST00000551352 MAGI1Q96QZ7 1491 aaPredicted RBP13.06□□□□□ -0.32
SMARCD1-210ENST00000551352 GRIN2BQ13224 1484 aa13.04□□□□□ -0.32
SMARCD1-210ENST00000551352 SYNJ1O43426 1573 aa13.04□□□□□ -0.32
SMARCD1-210ENST00000551352 BIVM-ERCC5R4GMW8 1640 aa13.04□□□□□ -0.32
SMARCD1-210ENST00000551352 ABCA10Q8WWZ4 1543 aa13.03□□□□□ -0.32
SMARCD1-210ENST00000551352 FBLN2P98095 1184 aa13.03□□□□□ -0.32
SMARCD1-210ENST00000551352 CYB5RLQ6IPT4 315 aa13.03□□□□□ -0.32
SMARCD1-210ENST00000551352 SYNJ2O15056 1496 aa13.02□□□□□ -0.33
SMARCD1-210ENST00000551352 GAPVD1Q14C86 1478 aa13.01□□□□□ -0.33
SMARCD1-210ENST00000551352 TOP2BQ02880 1626 aa12.99□□□□□ -0.33
SMARCD1-210ENST00000551352 ADAMTS12P58397 1594 aa12.98□□□□□ -0.33
SMARCD1-210ENST00000551352 ERCC6L2Q5T890 1561 aa12.98□□□□□ -0.33
SMARCD1-210ENST00000551352 SUPT5HO00267 1087 aaKnown RBP12.98□□□□□ -0.33
SMARCD1-210ENST00000551352 CEP170Q5SW79 1584 aa12.96□□□□□ -0.33
SMARCD1-210ENST00000551352 CHMP7Q8WUX9 453 aaPredicted RBP12.93□□□□□ -0.34
SMARCD1-210ENST00000551352 GRIN2AQ12879 1464 aa12.92□□□□□ -0.34
SMARCD1-210ENST00000551352 SHROOM2Q13796 1616 aa12.92□□□□□ -0.34
SMARCD1-210ENST00000551352 NUP160Q12769 1436 aa12.88□□□□□ -0.35
SMARCD1-210ENST00000551352 WRNQ14191 1432 aaPredicted RBP eCLIP12.88□□□□□ -0.35
SMARCD1-210ENST00000551352 ERICH3Q5RHP9 1530 aa12.86□□□□□ -0.35
SMARCD1-210ENST00000551352 TRHP20396 242 aaPredicted RBP12.84□□□□□ -0.35
SMARCD1-210ENST00000551352 KIF13AQ9H1H9 1805 aa12.83□□□□□ -0.35
SMARCD1-210ENST00000551352 FHAD1B1AJZ9 1412 aa12.82□□□□□ -0.36
SMARCD1-210ENST00000551352 RUSC2Q8N2Y8 1516 aa12.81□□□□□ -0.36
SMARCD1-210ENST00000551352 PRG4Q92954 1404 aaPredicted RBP12.71□□□□□ -0.37
SMARCD1-210ENST00000551352 CUL7Q14999 1698 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms