RNA–Protein interactions for RNA: ENST00000551269.1

PRPF40B-213, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 923 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-213ENST00000551269 NISCHQ9Y2I1 1504 aa27.82■■■□□ 2.04
PRPF40B-213ENST00000551269 CCDC180Q9P1Z9 1646 aa24.78■■□□□ 1.56
PRPF40B-213ENST00000551269 ABCC9O60706 1549 aa23.69■■□□□ 1.38
PRPF40B-213ENST00000551269 ZCCHC6Q5VYS8 1495 aaKnown RBP23.3■■□□□ 1.32
PRPF40B-213ENST00000551269 NACADO15069 1562 aa23.08■■□□□ 1.29
PRPF40B-213ENST00000551269 DCAF1Q9Y4B6 1507 aa23.07■■□□□ 1.28
PRPF40B-213ENST00000551269 RB1CC1Q8TDY2 1594 aa23.06■■□□□ 1.28
PRPF40B-213ENST00000551269 MYO15BQ96JP2 1530 aa23.02■■□□□ 1.28
PRPF40B-213ENST00000551269 DCAF8L2P0C7V8 631 aa22.99■■□□□ 1.27
PRPF40B-213ENST00000551269 UNC13AQ9UPW8 1703 aa22.68■■□□□ 1.22
PRPF40B-213ENST00000551269 SCRIBQ14160 1630 aa22.58■■□□□ 1.21
PRPF40B-213ENST00000551269 BICRAQ9NZM4 1560 aa22.27■■□□□ 1.16
PRPF40B-213ENST00000551269 SHROOM4Q9ULL8 1493 aa22.17■■□□□ 1.14
PRPF40B-213ENST00000551269 PABPN1Q86U42 306 aaKnown RBP eCLIP22.08■■□□□ 1.13
PRPF40B-213ENST00000551269 EIF4G1Q04637 1599 aaKnown RBP21.7■■□□□ 1.06
PRPF40B-213ENST00000551269 BAZ1AQ9NRL2 1556 aaPredicted RBP21.62■■□□□ 1.05
PRPF40B-213ENST00000551269 SMARCA4P51532 1647 aa21.62■■□□□ 1.05
PRPF40B-213ENST00000551269 CECR2Q9BXF3 1484 aa21.58■■□□□ 1.04
PRPF40B-213ENST00000551269 CC2D2AQ9P2K1 1620 aa21.52■■□□□ 1.04
PRPF40B-213ENST00000551269 MROH2BQ7Z745 1585 aa21.44■■□□□ 1.02
PRPF40B-213ENST00000551269 SMARCA2P51531 1590 aa21.37■■□□□ 1.01
PRPF40B-213ENST00000551269 PEG3Q9GZU2 1588 aa21.35■■□□□ 1.01
PRPF40B-213ENST00000551269 WIZO95785 1651 aa21.33■■□□□ 1
PRPF40B-213ENST00000551269 ATAD2BQ9ULI0 1458 aa21.27■■□□□ 1
PRPF40B-213ENST00000551269 RSF1Q96T23 1441 aaPredicted RBP21.27■■□□□ 1
PRPF40B-213ENST00000551269 HMGXB3Q12766 1538 aa21.24■□□□□ 0.99
PRPF40B-213ENST00000551269 BAZ1BQ9UIG0 1483 aaKnown RBP21.2■□□□□ 0.98
PRPF40B-213ENST00000551269 DNAJC5BQ9UF47 199 aa21.18■□□□□ 0.98
PRPF40B-213ENST00000551269 NCAPD3P42695 1498 aa21.17■□□□□ 0.98
PRPF40B-213ENST00000551269 TOP2AP11388 1531 aaKnown RBP21.11■□□□□ 0.97
PRPF40B-213ENST00000551269 SUPT5HO00267 1087 aaKnown RBP20.99■□□□□ 0.95
PRPF40B-213ENST00000551269 PRDM2Q13029 1718 aa20.78■□□□□ 0.92
PRPF40B-213ENST00000551269 CCDC88BA6NC98 1476 aa20.75■□□□□ 0.91
PRPF40B-213ENST00000551269 LAMC3Q9Y6N6 1575 aa20.72■□□□□ 0.91
PRPF40B-213ENST00000551269 NESP48681 1621 aa20.6■□□□□ 0.89
PRPF40B-213ENST00000551269 CADPSQ9ULU8 1353 aa20.57■□□□□ 0.88
PRPF40B-213ENST00000551269 CFTRP13569 1480 aa20.56■□□□□ 0.88
PRPF40B-213ENST00000551269 KIF21AQ7Z4S6 1674 aa20.56■□□□□ 0.88
PRPF40B-213ENST00000551269 PDS5BQ9NTI5 1447 aa20.46■□□□□ 0.87
PRPF40B-213ENST00000551269 ERCC6Q03468 1493 aa20.46■□□□□ 0.87
PRPF40B-213ENST00000551269 FANCD2Q9BXW9 1451 aa20.42■□□□□ 0.86
PRPF40B-213ENST00000551269 CEP164Q9UPV0 1460 aa20.41■□□□□ 0.86
PRPF40B-213ENST00000551269 THOC2Q8NI27 1593 aaKnown RBP20.34■□□□□ 0.85
PRPF40B-213ENST00000551269 MRC2Q9UBG0 1479 aa20.27■□□□□ 0.84
PRPF40B-213ENST00000551269 WDR62O43379 1518 aa20.22■□□□□ 0.83
PRPF40B-213ENST00000551269 DNMBPQ6XZF7 1577 aa20.21■□□□□ 0.83
PRPF40B-213ENST00000551269 ABCC8Q09428 1581 aa20.2■□□□□ 0.82
PRPF40B-213ENST00000551269 URB2Q14146 1524 aaKnown RBP20.17■□□□□ 0.82
PRPF40B-213ENST00000551269 BIVM-ERCC5R4GMW8 1640 aa20.16■□□□□ 0.82
PRPF40B-213ENST00000551269 TOPBP1Q92547 1522 aa20.13■□□□□ 0.81
PRPF40B-213ENST00000551269 SYNJ1O43426 1573 aa20.12■□□□□ 0.81
PRPF40B-213ENST00000551269 CUX1P39880 1505 aa20.12■□□□□ 0.81
PRPF40B-213ENST00000551269 WRNQ14191 1432 aaPredicted RBP eCLIP20.11■□□□□ 0.81
PRPF40B-213ENST00000551269 TOP2BQ02880 1626 aa20.11■□□□□ 0.81
PRPF40B-213ENST00000551269 CUX2O14529 1486 aa20.08■□□□□ 0.81
PRPF40B-213ENST00000551269 FGD5Q6ZNL6 1462 aa20.01■□□□□ 0.79
PRPF40B-213ENST00000551269 POLA1P09884 1462 aaPredicted RBP19.99■□□□□ 0.79
PRPF40B-213ENST00000551269 WDR97A6NE52 1622 aa19.98■□□□□ 0.79
PRPF40B-213ENST00000551269 TARBP1Q13395 1621 aaKnown RBP19.93■□□□□ 0.78
PRPF40B-213ENST00000551269 IFT140Q96RY7 1462 aa19.92■□□□□ 0.78
PRPF40B-213ENST00000551269 EIF4G3O43432 1585 aaKnown RBP19.86■□□□□ 0.77
PRPF40B-213ENST00000551269 RAD54L2Q9Y4B4 1467 aa19.85■□□□□ 0.77
PRPF40B-213ENST00000551269 SOGA1O94964 1423 aa19.85■□□□□ 0.77
PRPF40B-213ENST00000551269 PBRM1Q86U86 1689 aa19.84■□□□□ 0.77
PRPF40B-213ENST00000551269 ABCA10Q8WWZ4 1543 aa19.81■□□□□ 0.76
PRPF40B-213ENST00000551269 TRIM41Q8WV44 630 aa19.81■□□□□ 0.76
PRPF40B-213ENST00000551269 ABCA5Q8WWZ7 1642 aa19.8■□□□□ 0.76
PRPF40B-213ENST00000551269 CHIC1Q5VXU3 224 aa19.75■□□□□ 0.75
PRPF40B-213ENST00000551269 ZNF608Q9ULD9 1512 aaPredicted RBP19.75■□□□□ 0.75
PRPF40B-213ENST00000551269 GAPVD1Q14C86 1478 aa19.68■□□□□ 0.74
PRPF40B-213ENST00000551269 KIF27Q86VH2 1401 aa19.67■□□□□ 0.74
PRPF40B-213ENST00000551269 TDRD9Q8NDG6 1382 aaKnown RBP19.66■□□□□ 0.74
PRPF40B-213ENST00000551269 AQRO60306 1485 aaKnown RBP eCLIP19.66■□□□□ 0.74
PRPF40B-213ENST00000551269 CUL7Q14999 1698 aa19.64■□□□□ 0.73
PRPF40B-213ENST00000551269 ERICH3Q5RHP9 1530 aa19.63■□□□□ 0.73
PRPF40B-213ENST00000551269 GRIN2BQ13224 1484 aa19.63■□□□□ 0.73
PRPF40B-213ENST00000551269 CHD1O14646 1710 aa19.6■□□□□ 0.73
PRPF40B-213ENST00000551269 ADAMTS12P58397 1594 aa19.59■□□□□ 0.73
PRPF40B-213ENST00000551269 SNAPC4Q5SXM2 1469 aa19.59■□□□□ 0.73
PRPF40B-213ENST00000551269 MAGI1Q96QZ7 1491 aaPredicted RBP19.58■□□□□ 0.72
PRPF40B-213ENST00000551269 EEA1Q15075 1411 aa19.57■□□□□ 0.72
PRPF40B-213ENST00000551269 RUSC2Q8N2Y8 1516 aa19.54■□□□□ 0.72
PRPF40B-213ENST00000551269 SYNJ2O15056 1496 aa19.47■□□□□ 0.71
PRPF40B-213ENST00000551269 FHAD1B1AJZ9 1412 aa19.45■□□□□ 0.7
PRPF40B-213ENST00000551269 KIF21BO75037 1637 aa19.42■□□□□ 0.7
PRPF40B-213ENST00000551269 IGF1RP08069 1367 aa19.41■□□□□ 0.7
PRPF40B-213ENST00000551269 CTTNBP2Q8WZ74 1663 aa19.4■□□□□ 0.7
PRPF40B-213ENST00000551269 FAM9AQ8IZU1 332 aaPredicted RBP19.4■□□□□ 0.7
PRPF40B-213ENST00000551269 GRIN2AQ12879 1464 aa19.4■□□□□ 0.7
PRPF40B-213ENST00000551269 CARMIL1Q5VZK9 1371 aa19.37■□□□□ 0.69
PRPF40B-213ENST00000551269 RAPGEF2Q9Y4G8 1499 aa19.36■□□□□ 0.69
PRPF40B-213ENST00000551269 FBLN2P98095 1184 aa19.35■□□□□ 0.69
PRPF40B-213ENST00000551269 CHMP7Q8WUX9 453 aaPredicted RBP19.35■□□□□ 0.69
PRPF40B-213ENST00000551269 CSRNP3Q8WYN3 585 aa19.34■□□□□ 0.69
PRPF40B-213ENST00000551269 PRXQ9BXM0 1461 aa19.34■□□□□ 0.69
PRPF40B-213ENST00000551269 CEP170Q5SW79 1584 aa19.32■□□□□ 0.68
PRPF40B-213ENST00000551269 GOLGA3Q08378 1498 aa19.28■□□□□ 0.68
PRPF40B-213ENST00000551269 CLASP1Q7Z460 1538 aa19.25■□□□□ 0.67
PRPF40B-213ENST00000551269 NUP160Q12769 1436 aa19.25■□□□□ 0.67
PRPF40B-213ENST00000551269 IQGAP2Q13576 1575 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms