RNA–Protein interactions for RNA: ENST00000551216.2

SCN8A-207, Transcript of sodium voltage-gated channel alpha subunit 8, humanhuman

TSL 1 (best)

Gene SCN8A, Length 1,627 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN8A-207ENST00000551216 NISCHQ9Y2I1 1504 aa32.09■■■□□ 2.73
SCN8A-207ENST00000551216 CCDC180Q9P1Z9 1646 aa27.93■■■□□ 2.06
SCN8A-207ENST00000551216 ZCCHC6Q5VYS8 1495 aaKnown RBP27.04■■□□□ 1.92
SCN8A-207ENST00000551216 DCAF1Q9Y4B6 1507 aa26.67■■□□□ 1.86
SCN8A-207ENST00000551216 MYO15BQ96JP2 1530 aa26.27■■□□□ 1.8
SCN8A-207ENST00000551216 DCAF8L2P0C7V8 631 aa26.16■■□□□ 1.78
SCN8A-207ENST00000551216 SHROOM4Q9ULL8 1493 aa26.15■■□□□ 1.78
SCN8A-207ENST00000551216 NACADO15069 1562 aa25.91■■□□□ 1.74
SCN8A-207ENST00000551216 ABCC9O60706 1549 aa25.86■■□□□ 1.73
SCN8A-207ENST00000551216 RB1CC1Q8TDY2 1594 aa25.57■■□□□ 1.68
SCN8A-207ENST00000551216 SCRIBQ14160 1630 aa25.53■■□□□ 1.68
SCN8A-207ENST00000551216 SUPT5HO00267 1087 aaKnown RBP25.38■■□□□ 1.65
SCN8A-207ENST00000551216 UNC13AQ9UPW8 1703 aa25.01■■□□□ 1.59
SCN8A-207ENST00000551216 RSF1Q96T23 1441 aaPredicted RBP24.99■■□□□ 1.59
SCN8A-207ENST00000551216 BAZ1AQ9NRL2 1556 aaPredicted RBP24.8■■□□□ 1.56
SCN8A-207ENST00000551216 CECR2Q9BXF3 1484 aa24.79■■□□□ 1.56
SCN8A-207ENST00000551216 MROH2BQ7Z745 1585 aa24.73■■□□□ 1.55
SCN8A-207ENST00000551216 BICRAQ9NZM4 1560 aa24.73■■□□□ 1.55
SCN8A-207ENST00000551216 SMARCA4P51532 1647 aa24.59■■□□□ 1.53
SCN8A-207ENST00000551216 CHIC1Q5VXU3 224 aa24.57■■□□□ 1.52
SCN8A-207ENST00000551216 WIZO95785 1651 aa24.54■■□□□ 1.52
SCN8A-207ENST00000551216 PABPN1Q86U42 306 aaKnown RBP eCLIP24.39■■□□□ 1.5
SCN8A-207ENST00000551216 TOP2AP11388 1531 aaKnown RBP24.38■■□□□ 1.49
SCN8A-207ENST00000551216 PEG3Q9GZU2 1588 aa24.38■■□□□ 1.49
SCN8A-207ENST00000551216 SMARCA2P51531 1590 aa24.16■■□□□ 1.46
SCN8A-207ENST00000551216 EIF4G1Q04637 1599 aaKnown RBP24.09■■□□□ 1.45
SCN8A-207ENST00000551216 ATAD2BQ9ULI0 1458 aa24.08■■□□□ 1.45
SCN8A-207ENST00000551216 CCDC88BA6NC98 1476 aa24.08■■□□□ 1.44
SCN8A-207ENST00000551216 BAZ1BQ9UIG0 1483 aaKnown RBP23.97■■□□□ 1.43
SCN8A-207ENST00000551216 TRIM41Q8WV44 630 aa23.95■■□□□ 1.43
SCN8A-207ENST00000551216 HMGXB3Q12766 1538 aa23.9■■□□□ 1.42
SCN8A-207ENST00000551216 NCAPD3P42695 1498 aa23.89■■□□□ 1.41
SCN8A-207ENST00000551216 ABCC8Q09428 1581 aa23.61■■□□□ 1.37
SCN8A-207ENST00000551216 LOC105371045A0A1W2PR82 267 aa23.53■■□□□ 1.36
SCN8A-207ENST00000551216 WRNQ14191 1432 aaPredicted RBP eCLIP23.52■■□□□ 1.36
SCN8A-207ENST00000551216 CC2D2AQ9P2K1 1620 aa23.5■■□□□ 1.35
SCN8A-207ENST00000551216 EEA1Q15075 1411 aa23.5■■□□□ 1.35
SCN8A-207ENST00000551216 CFTRP13569 1480 aa23.43■■□□□ 1.34
SCN8A-207ENST00000551216 PRDM2Q13029 1718 aa23.41■■□□□ 1.34
SCN8A-207ENST00000551216 SYNJ1O43426 1573 aa23.37■■□□□ 1.33
SCN8A-207ENST00000551216 FAM9AQ8IZU1 332 aaPredicted RBP23.36■■□□□ 1.33
SCN8A-207ENST00000551216 TOP2BQ02880 1626 aa23.34■■□□□ 1.33
SCN8A-207ENST00000551216 BIVM-ERCC5R4GMW8 1640 aa23.32■■□□□ 1.32
SCN8A-207ENST00000551216 CADPSQ9ULU8 1353 aa23.25■■□□□ 1.31
SCN8A-207ENST00000551216 SOGA1O94964 1423 aa23.24■■□□□ 1.31
SCN8A-207ENST00000551216 CSRNP3Q8WYN3 585 aa23.19■■□□□ 1.3
SCN8A-207ENST00000551216 CUX1P39880 1505 aa23.12■■□□□ 1.29
SCN8A-207ENST00000551216 KIF21BO75037 1637 aa23.12■■□□□ 1.29
SCN8A-207ENST00000551216 RUSC2Q8N2Y8 1516 aa23.1■■□□□ 1.29
SCN8A-207ENST00000551216 TNIKQ9UKE5 1360 aa23.09■■□□□ 1.29
SCN8A-207ENST00000551216 GOLGA3Q08378 1498 aa23.08■■□□□ 1.29
SCN8A-207ENST00000551216 CEP164Q9UPV0 1460 aa23.07■■□□□ 1.28
SCN8A-207ENST00000551216 LAMC3Q9Y6N6 1575 aa23.03■■□□□ 1.28
SCN8A-207ENST00000551216 FANCD2Q9BXW9 1451 aa22.96■■□□□ 1.27
SCN8A-207ENST00000551216 KIF27Q86VH2 1401 aa22.94■■□□□ 1.26
SCN8A-207ENST00000551216 CEP162Q5TB80 1403 aa22.93■■□□□ 1.26
SCN8A-207ENST00000551216 ERICH3Q5RHP9 1530 aa22.92■■□□□ 1.26
SCN8A-207ENST00000551216 TRIM26Q12899 539 aaPredicted RBP22.92■■□□□ 1.26
SCN8A-207ENST00000551216 EHMT2Q96KQ7 1210 aa22.9■■□□□ 1.26
SCN8A-207ENST00000551216 DNMBPQ6XZF7 1577 aa22.87■■□□□ 1.25
SCN8A-207ENST00000551216 PRXQ9BXM0 1461 aa22.86■■□□□ 1.25
SCN8A-207ENST00000551216 UBTFP17480 764 aaKnown RBP22.86■■□□□ 1.25
SCN8A-207ENST00000551216 PCGF6Q9BYE7 350 aa22.85■■□□□ 1.25
SCN8A-207ENST00000551216 PDS5BQ9NTI5 1447 aa22.82■■□□□ 1.24
SCN8A-207ENST00000551216 FGD5Q6ZNL6 1462 aa22.82■■□□□ 1.24
SCN8A-207ENST00000551216 NESP48681 1621 aa22.8■■□□□ 1.24
SCN8A-207ENST00000551216 RAPGEF2Q9Y4G8 1499 aa22.8■■□□□ 1.24
SCN8A-207ENST00000551216 TOPBP1Q92547 1522 aa22.76■■□□□ 1.23
SCN8A-207ENST00000551216 CUX2O14529 1486 aa22.72■■□□□ 1.23
SCN8A-207ENST00000551216 ABCA10Q8WWZ4 1543 aa22.7■■□□□ 1.22
SCN8A-207ENST00000551216 CLIP1P30622 1438 aa22.69■■□□□ 1.22
SCN8A-207ENST00000551216 POLA1P09884 1462 aaPredicted RBP22.67■■□□□ 1.22
SCN8A-207ENST00000551216 IGF1RP08069 1367 aa22.64■■□□□ 1.22
SCN8A-207ENST00000551216 URB2Q14146 1524 aaKnown RBP22.64■■□□□ 1.21
SCN8A-207ENST00000551216 KIF21AQ7Z4S6 1674 aa22.61■■□□□ 1.21
SCN8A-207ENST00000551216 WDR97A6NE52 1622 aa22.58■■□□□ 1.21
SCN8A-207ENST00000551216 VPS8Q8N3P4 1428 aa22.58■■□□□ 1.2
SCN8A-207ENST00000551216 HRCP23327 699 aa22.57■■□□□ 1.2
SCN8A-207ENST00000551216 DNAJC5BQ9UF47 199 aa22.57■■□□□ 1.2
SCN8A-207ENST00000551216 CARMIL1Q5VZK9 1371 aa22.55■■□□□ 1.2
SCN8A-207ENST00000551216 CUL7Q14999 1698 aa22.55■■□□□ 1.2
SCN8A-207ENST00000551216 RAD54L2Q9Y4B4 1467 aa22.52■■□□□ 1.2
SCN8A-207ENST00000551216 ABCA5Q8WWZ7 1642 aa22.47■■□□□ 1.19
SCN8A-207ENST00000551216 MRC2Q9UBG0 1479 aa22.47■■□□□ 1.19
SCN8A-207ENST00000551216 TARBP1Q13395 1621 aaKnown RBP22.41■■□□□ 1.18
SCN8A-207ENST00000551216 ARAP1Q96P48 1450 aa22.4■■□□□ 1.18
SCN8A-207ENST00000551216 GAPVD1Q14C86 1478 aa22.37■■□□□ 1.17
SCN8A-207ENST00000551216 WDR62O43379 1518 aa22.36■■□□□ 1.17
SCN8A-207ENST00000551216 ARHGAP35Q9NRY4 1499 aa22.35■■□□□ 1.17
SCN8A-207ENST00000551216 APLP2Q06481 763 aa22.34■■□□□ 1.17
SCN8A-207ENST00000551216 CTTNBP2Q8WZ74 1663 aa22.31■■□□□ 1.16
SCN8A-207ENST00000551216 PPARGC1BQ86YN6 1023 aaKnown RBP22.29■■□□□ 1.16
SCN8A-207ENST00000551216 ZEB1P37275 1124 aaPredicted RBP22.28■■□□□ 1.16
SCN8A-207ENST00000551216 IFT140Q96RY7 1462 aa22.28■■□□□ 1.16
SCN8A-207ENST00000551216 EFCAB5A4FU69 1503 aa22.28■■□□□ 1.16
SCN8A-207ENST00000551216 TDRD9Q8NDG6 1382 aaKnown RBP22.27■■□□□ 1.16
SCN8A-207ENST00000551216 MAP3K1Q13233 1512 aa22.24■■□□□ 1.15
SCN8A-207ENST00000551216 PBRM1Q86U86 1689 aa22.24■■□□□ 1.15
SCN8A-207ENST00000551216 FHAD1B1AJZ9 1412 aa22.21■■□□□ 1.15
SCN8A-207ENST00000551216 RANGAP1P46060 587 aaPredicted RBP22.2■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms