RNA–Protein interactions for RNA: ENST00000551111.1

PRPF40B-212, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 1,061 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-212ENST00000551111 NISCHQ9Y2I1 1504 aa29.15■■■□□ 2.26
PRPF40B-212ENST00000551111 ABCC9O60706 1549 aa26.19■■□□□ 1.78
PRPF40B-212ENST00000551111 CCDC180Q9P1Z9 1646 aa26.13■■□□□ 1.77
PRPF40B-212ENST00000551111 RB1CC1Q8TDY2 1594 aa24.84■■□□□ 1.57
PRPF40B-212ENST00000551111 NACADO15069 1562 aa24.67■■□□□ 1.54
PRPF40B-212ENST00000551111 DNAJC5BQ9UF47 199 aa24.66■■□□□ 1.54
PRPF40B-212ENST00000551111 DCAF8L2P0C7V8 631 aa24.63■■□□□ 1.53
PRPF40B-212ENST00000551111 UNC13AQ9UPW8 1703 aa24.49■■□□□ 1.51
PRPF40B-212ENST00000551111 PABPN1Q86U42 306 aaKnown RBP eCLIP24.41■■□□□ 1.5
PRPF40B-212ENST00000551111 MYO15BQ96JP2 1530 aa24.27■■□□□ 1.48
PRPF40B-212ENST00000551111 BICRAQ9NZM4 1560 aa24.25■■□□□ 1.47
PRPF40B-212ENST00000551111 ZCCHC6Q5VYS8 1495 aaKnown RBP24.13■■□□□ 1.45
PRPF40B-212ENST00000551111 DCAF1Q9Y4B6 1507 aa24■■□□□ 1.43
PRPF40B-212ENST00000551111 SCRIBQ14160 1630 aa23.88■■□□□ 1.41
PRPF40B-212ENST00000551111 SHROOM4Q9ULL8 1493 aa23.68■■□□□ 1.38
PRPF40B-212ENST00000551111 CC2D2AQ9P2K1 1620 aa23.66■■□□□ 1.38
PRPF40B-212ENST00000551111 EIF4G1Q04637 1599 aaKnown RBP23.58■■□□□ 1.37
PRPF40B-212ENST00000551111 CECR2Q9BXF3 1484 aa23.55■■□□□ 1.36
PRPF40B-212ENST00000551111 NCAPD3P42695 1498 aa22.79■■□□□ 1.24
PRPF40B-212ENST00000551111 SMARCA4P51532 1647 aa22.75■■□□□ 1.23
PRPF40B-212ENST00000551111 ATAD2BQ9ULI0 1458 aa22.75■■□□□ 1.23
PRPF40B-212ENST00000551111 SMARCA2P51531 1590 aa22.63■■□□□ 1.21
PRPF40B-212ENST00000551111 HMGXB3Q12766 1538 aa22.61■■□□□ 1.21
PRPF40B-212ENST00000551111 BAZ1AQ9NRL2 1556 aaPredicted RBP22.57■■□□□ 1.2
PRPF40B-212ENST00000551111 NESP48681 1621 aa22.55■■□□□ 1.2
PRPF40B-212ENST00000551111 ERCC6Q03468 1493 aa22.53■■□□□ 1.2
PRPF40B-212ENST00000551111 MROH2BQ7Z745 1585 aa22.51■■□□□ 1.19
PRPF40B-212ENST00000551111 DNAJC5Q9H3Z4 198 aa22.51■■□□□ 1.19
PRPF40B-212ENST00000551111 BAZ1BQ9UIG0 1483 aaKnown RBP22.5■■□□□ 1.19
PRPF40B-212ENST00000551111 PEG3Q9GZU2 1588 aa22.48■■□□□ 1.19
PRPF40B-212ENST00000551111 CUX2O14529 1486 aa22.46■■□□□ 1.19
PRPF40B-212ENST00000551111 WIZO95785 1651 aa22.29■■□□□ 1.16
PRPF40B-212ENST00000551111 THOC2Q8NI27 1593 aaKnown RBP22.28■■□□□ 1.16
PRPF40B-212ENST00000551111 KIF21AQ7Z4S6 1674 aa22.27■■□□□ 1.16
PRPF40B-212ENST00000551111 LAMC3Q9Y6N6 1575 aa22.27■■□□□ 1.16
PRPF40B-212ENST00000551111 PDS5BQ9NTI5 1447 aa22.1■■□□□ 1.13
PRPF40B-212ENST00000551111 CADPSQ9ULU8 1353 aa22.1■■□□□ 1.13
PRPF40B-212ENST00000551111 RSF1Q96T23 1441 aaPredicted RBP22■■□□□ 1.11
PRPF40B-212ENST00000551111 MRC2Q9UBG0 1479 aa21.95■■□□□ 1.1
PRPF40B-212ENST00000551111 WDR62O43379 1518 aa21.91■■□□□ 1.1
PRPF40B-212ENST00000551111 TOP2AP11388 1531 aaKnown RBP21.89■■□□□ 1.09
PRPF40B-212ENST00000551111 FANCD2Q9BXW9 1451 aa21.86■■□□□ 1.09
PRPF40B-212ENST00000551111 CEP164Q9UPV0 1460 aa21.86■■□□□ 1.09
PRPF40B-212ENST00000551111 CFTRP13569 1480 aa21.85■■□□□ 1.09
PRPF40B-212ENST00000551111 URB2Q14146 1524 aaKnown RBP21.74■■□□□ 1.07
PRPF40B-212ENST00000551111 PRDM2Q13029 1718 aa21.72■■□□□ 1.07
PRPF40B-212ENST00000551111 CCDC88BA6NC98 1476 aa21.69■■□□□ 1.06
PRPF40B-212ENST00000551111 TRIM41Q8WV44 630 aa21.57■■□□□ 1.04
PRPF40B-212ENST00000551111 ZNF608Q9ULD9 1512 aaPredicted RBP21.49■■□□□ 1.03
PRPF40B-212ENST00000551111 TOPBP1Q92547 1522 aa21.47■■□□□ 1.03
PRPF40B-212ENST00000551111 OSCARQ8IYS5 282 aa21.46■■□□□ 1.03
PRPF40B-212ENST00000551111 IFT140Q96RY7 1462 aa21.39■■□□□ 1.02
PRPF40B-212ENST00000551111 DNMBPQ6XZF7 1577 aa21.37■■□□□ 1.01
PRPF40B-212ENST00000551111 EIF4G3O43432 1585 aaKnown RBP21.33■■□□□ 1.01
PRPF40B-212ENST00000551111 TARBP1Q13395 1621 aaKnown RBP21.32■■□□□ 1
PRPF40B-212ENST00000551111 ABCC8Q09428 1581 aa21.31■■□□□ 1
PRPF40B-212ENST00000551111 AQRO60306 1485 aaKnown RBP eCLIP21.28■■□□□ 1
PRPF40B-212ENST00000551111 RIMBP3CA6NJZ7 1639 aa21.28■■□□□ 1
PRPF40B-212ENST00000551111 RIMBP3BA6NNM3 1639 aa21.28■■□□□ 1
PRPF40B-212ENST00000551111 RIMBP3Q9UFD9 1639 aa21.28■■□□□ 1
PRPF40B-212ENST00000551111 POLA1P09884 1462 aaPredicted RBP21.26■□□□□ 0.99
PRPF40B-212ENST00000551111 CHD1O14646 1710 aa21.25■□□□□ 0.99
PRPF40B-212ENST00000551111 RAD54L2Q9Y4B4 1467 aa21.22■□□□□ 0.99
PRPF40B-212ENST00000551111 ARHGEF11O15085 1522 aa21.17■□□□□ 0.98
PRPF40B-212ENST00000551111 CUX1P39880 1505 aa21.14■□□□□ 0.98
PRPF40B-212ENST00000551111 SOGA1O94964 1423 aa21.13■□□□□ 0.97
PRPF40B-212ENST00000551111 TDRD9Q8NDG6 1382 aaKnown RBP21.13■□□□□ 0.97
PRPF40B-212ENST00000551111 FGD5Q6ZNL6 1462 aa21.12■□□□□ 0.97
PRPF40B-212ENST00000551111 FBLN2P98095 1184 aa21.1■□□□□ 0.97
PRPF40B-212ENST00000551111 SUPT5HO00267 1087 aaKnown RBP21.06■□□□□ 0.96
PRPF40B-212ENST00000551111 CYB5RLQ6IPT4 315 aa21.03■□□□□ 0.96
PRPF40B-212ENST00000551111 SNAPC4Q5SXM2 1469 aa21.02■□□□□ 0.96
PRPF40B-212ENST00000551111 WDR97A6NE52 1622 aa21.02■□□□□ 0.96
PRPF40B-212ENST00000551111 ARAP1Q96P48 1450 aa20.98■□□□□ 0.95
PRPF40B-212ENST00000551111 PBRM1Q86U86 1689 aa20.95■□□□□ 0.94
PRPF40B-212ENST00000551111 GRIN2BQ13224 1484 aa20.92■□□□□ 0.94
PRPF40B-212ENST00000551111 CLASP1Q7Z460 1538 aa20.92■□□□□ 0.94
PRPF40B-212ENST00000551111 MAGI1Q96QZ7 1491 aaPredicted RBP20.9■□□□□ 0.94
PRPF40B-212ENST00000551111 CHMP7Q8WUX9 453 aaPredicted RBP20.89■□□□□ 0.93
PRPF40B-212ENST00000551111 GAPVD1Q14C86 1478 aa20.88■□□□□ 0.93
PRPF40B-212ENST00000551111 ABCA5Q8WWZ7 1642 aa20.86■□□□□ 0.93
PRPF40B-212ENST00000551111 SYNJ1O43426 1573 aa20.85■□□□□ 0.93
PRPF40B-212ENST00000551111 ABCA10Q8WWZ4 1543 aa20.85■□□□□ 0.93
PRPF40B-212ENST00000551111 SYNJ2O15056 1496 aa20.85■□□□□ 0.93
PRPF40B-212ENST00000551111 BIVM-ERCC5R4GMW8 1640 aa20.78■□□□□ 0.92
PRPF40B-212ENST00000551111 TOP2BQ02880 1626 aa20.76■□□□□ 0.91
PRPF40B-212ENST00000551111 TRHP20396 242 aaPredicted RBP20.75■□□□□ 0.91
PRPF40B-212ENST00000551111 WRNQ14191 1432 aaPredicted RBP eCLIP20.73■□□□□ 0.91
PRPF40B-212ENST00000551111 ERCC6L2Q5T890 1561 aa20.7■□□□□ 0.9
PRPF40B-212ENST00000551111 ADAMTS12P58397 1594 aa20.69■□□□□ 0.9
PRPF40B-212ENST00000551111 GRIN2AQ12879 1464 aa20.68■□□□□ 0.9
PRPF40B-212ENST00000551111 CEP170Q5SW79 1584 aa20.67■□□□□ 0.9
PRPF40B-212ENST00000551111 NUP160Q12769 1436 aa20.61■□□□□ 0.89
PRPF40B-212ENST00000551111 FHAD1B1AJZ9 1412 aa20.57■□□□□ 0.88
PRPF40B-212ENST00000551111 ERICH3Q5RHP9 1530 aa20.57■□□□□ 0.88
PRPF40B-212ENST00000551111 SHROOM2Q13796 1616 aa20.56■□□□□ 0.88
PRPF40B-212ENST00000551111 PRG4Q92954 1404 aaPredicted RBP20.42■□□□□ 0.86
PRPF40B-212ENST00000551111 RUSC2Q8N2Y8 1516 aa20.4■□□□□ 0.86
PRPF40B-212ENST00000551111 JPH4Q96JJ6 628 aa20.4■□□□□ 0.86
PRPF40B-212ENST00000551111 KIF13AQ9H1H9 1805 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms