RNA–Protein interactions for RNA: ENST00000551063.5

PRPF40B-211, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 4

Gene PRPF40B, Length 531 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-211ENST00000551063 NISCHQ9Y2I1 1504 aa37.56■■■■□ 3.6
PRPF40B-211ENST00000551063 CCDC180Q9P1Z9 1646 aa33.4■■■□□ 2.94
PRPF40B-211ENST00000551063 ABCC9O60706 1549 aa32.92■■■□□ 2.86
PRPF40B-211ENST00000551063 RB1CC1Q8TDY2 1594 aa31.47■■■□□ 2.63
PRPF40B-211ENST00000551063 NACADO15069 1562 aa31.44■■■□□ 2.62
PRPF40B-211ENST00000551063 ZCCHC6Q5VYS8 1495 aaKnown RBP31.32■■■□□ 2.6
PRPF40B-211ENST00000551063 MYO15BQ96JP2 1530 aa31.3■■■□□ 2.6
PRPF40B-211ENST00000551063 DCAF8L2P0C7V8 631 aa31.29■■■□□ 2.6
PRPF40B-211ENST00000551063 DCAF1Q9Y4B6 1507 aa31.14■■■□□ 2.57
PRPF40B-211ENST00000551063 DNAJC5BQ9UF47 199 aa30.83■■■□□ 2.53
PRPF40B-211ENST00000551063 PABPN1Q86U42 306 aaKnown RBP eCLIP30.7■■■□□ 2.51
PRPF40B-211ENST00000551063 UNC13AQ9UPW8 1703 aa30.61■■■□□ 2.49
PRPF40B-211ENST00000551063 BICRAQ9NZM4 1560 aa30.49■■■□□ 2.47
PRPF40B-211ENST00000551063 SCRIBQ14160 1630 aa30.43■■■□□ 2.46
PRPF40B-211ENST00000551063 SHROOM4Q9ULL8 1493 aa30.31■■■□□ 2.44
PRPF40B-211ENST00000551063 CC2D2AQ9P2K1 1620 aa29.73■■■□□ 2.35
PRPF40B-211ENST00000551063 EIF4G1Q04637 1599 aaKnown RBP29.71■■■□□ 2.35
PRPF40B-211ENST00000551063 CECR2Q9BXF3 1484 aa29.68■■■□□ 2.34
PRPF40B-211ENST00000551063 BAZ1AQ9NRL2 1556 aaPredicted RBP29.13■■■□□ 2.25
PRPF40B-211ENST00000551063 SMARCA4P51532 1647 aa29.13■■■□□ 2.25
PRPF40B-211ENST00000551063 NCAPD3P42695 1498 aa29.04■■■□□ 2.24
PRPF40B-211ENST00000551063 ATAD2BQ9ULI0 1458 aa29.03■■■□□ 2.24
PRPF40B-211ENST00000551063 SMARCA2P51531 1590 aa28.99■■■□□ 2.23
PRPF40B-211ENST00000551063 MROH2BQ7Z745 1585 aa28.92■■■□□ 2.22
PRPF40B-211ENST00000551063 PEG3Q9GZU2 1588 aa28.9■■■□□ 2.22
PRPF40B-211ENST00000551063 HMGXB3Q12766 1538 aa28.89■■■□□ 2.21
PRPF40B-211ENST00000551063 BAZ1BQ9UIG0 1483 aaKnown RBP28.78■■■□□ 2.2
PRPF40B-211ENST00000551063 RSF1Q96T23 1441 aaPredicted RBP28.6■■■□□ 2.17
PRPF40B-211ENST00000551063 WIZO95785 1651 aa28.55■■■□□ 2.16
PRPF40B-211ENST00000551063 ERCC6Q03468 1493 aa28.46■■■□□ 2.15
PRPF40B-211ENST00000551063 CUX2O14529 1486 aa28.39■■■□□ 2.13
PRPF40B-211ENST00000551063 TOP2AP11388 1531 aaKnown RBP28.34■■■□□ 2.13
PRPF40B-211ENST00000551063 DNAJC5Q9H3Z4 198 aa28.33■■■□□ 2.13
PRPF40B-211ENST00000551063 NESP48681 1621 aa28.28■■■□□ 2.12
PRPF40B-211ENST00000551063 LAMC3Q9Y6N6 1575 aa28.24■■■□□ 2.11
PRPF40B-211ENST00000551063 CADPSQ9ULU8 1353 aa28.17■■■□□ 2.1
PRPF40B-211ENST00000551063 PDS5BQ9NTI5 1447 aa28.09■■■□□ 2.09
PRPF40B-211ENST00000551063 CFTRP13569 1480 aa28.01■■■□□ 2.07
PRPF40B-211ENST00000551063 CCDC88BA6NC98 1476 aa27.97■■■□□ 2.07
PRPF40B-211ENST00000551063 THOC2Q8NI27 1593 aaKnown RBP27.95■■■□□ 2.07
PRPF40B-211ENST00000551063 KIF21AQ7Z4S6 1674 aa27.88■■■□□ 2.05
PRPF40B-211ENST00000551063 FANCD2Q9BXW9 1451 aa27.83■■■□□ 2.05
PRPF40B-211ENST00000551063 CEP164Q9UPV0 1460 aa27.81■■■□□ 2.04
PRPF40B-211ENST00000551063 MRC2Q9UBG0 1479 aa27.79■■■□□ 2.04
PRPF40B-211ENST00000551063 SUPT5HO00267 1087 aaKnown RBP27.77■■■□□ 2.04
PRPF40B-211ENST00000551063 WDR62O43379 1518 aa27.7■■■□□ 2.02
PRPF40B-211ENST00000551063 PRDM2Q13029 1718 aa27.67■■■□□ 2.02
PRPF40B-211ENST00000551063 URB2Q14146 1524 aaKnown RBP27.54■■■□□ 2
PRPF40B-211ENST00000551063 ABCC8Q09428 1581 aa27.4■■□□□ 1.98
PRPF40B-211ENST00000551063 TOPBP1Q92547 1522 aa27.37■■□□□ 1.97
PRPF40B-211ENST00000551063 DNMBPQ6XZF7 1577 aa27.35■■□□□ 1.97
PRPF40B-211ENST00000551063 IFT140Q96RY7 1462 aa27.25■■□□□ 1.95
PRPF40B-211ENST00000551063 OSCARQ8IYS5 282 aa27.17■■□□□ 1.94
PRPF40B-211ENST00000551063 POLA1P09884 1462 aaPredicted RBP27.15■■□□□ 1.94
PRPF40B-211ENST00000551063 CUX1P39880 1505 aa27.14■■□□□ 1.94
PRPF40B-211ENST00000551063 TRIM41Q8WV44 630 aa27.1■■□□□ 1.93
PRPF40B-211ENST00000551063 FGD5Q6ZNL6 1462 aa27.07■■□□□ 1.92
PRPF40B-211ENST00000551063 ZNF608Q9ULD9 1512 aaPredicted RBP27.07■■□□□ 1.92
PRPF40B-211ENST00000551063 TARBP1Q13395 1621 aaKnown RBP27.05■■□□□ 1.92
PRPF40B-211ENST00000551063 SOGA1O94964 1423 aa27.02■■□□□ 1.92
PRPF40B-211ENST00000551063 RAD54L2Q9Y4B4 1467 aa27■■□□□ 1.91
PRPF40B-211ENST00000551063 WRNQ14191 1432 aaPredicted RBP eCLIP26.99■■□□□ 1.91
PRPF40B-211ENST00000551063 EIF4G3O43432 1585 aaKnown RBP26.97■■□□□ 1.91
PRPF40B-211ENST00000551063 WDR97A6NE52 1622 aa26.92■■□□□ 1.9
PRPF40B-211ENST00000551063 AQRO60306 1485 aaKnown RBP eCLIP26.91■■□□□ 1.9
PRPF40B-211ENST00000551063 TOP2BQ02880 1626 aa26.9■■□□□ 1.9
PRPF40B-211ENST00000551063 BIVM-ERCC5R4GMW8 1640 aa26.88■■□□□ 1.89
PRPF40B-211ENST00000551063 SYNJ1O43426 1573 aa26.87■■□□□ 1.89
PRPF40B-211ENST00000551063 TDRD9Q8NDG6 1382 aaKnown RBP26.85■■□□□ 1.89
PRPF40B-211ENST00000551063 ABCA10Q8WWZ4 1543 aa26.84■■□□□ 1.89
PRPF40B-211ENST00000551063 GRIN2BQ13224 1484 aa26.74■■□□□ 1.87
PRPF40B-211ENST00000551063 GAPVD1Q14C86 1478 aa26.72■■□□□ 1.87
PRPF40B-211ENST00000551063 ABCA5Q8WWZ7 1642 aa26.7■■□□□ 1.86
PRPF40B-211ENST00000551063 SNAPC4Q5SXM2 1469 aa26.69■■□□□ 1.86
PRPF40B-211ENST00000551063 MAGI1Q96QZ7 1491 aaPredicted RBP26.69■■□□□ 1.86
PRPF40B-211ENST00000551063 RIMBP3CA6NJZ7 1639 aa26.68■■□□□ 1.86
PRPF40B-211ENST00000551063 RIMBP3BA6NNM3 1639 aa26.68■■□□□ 1.86
PRPF40B-211ENST00000551063 RIMBP3Q9UFD9 1639 aa26.68■■□□□ 1.86
PRPF40B-211ENST00000551063 FBLN2P98095 1184 aa26.67■■□□□ 1.86
PRPF40B-211ENST00000551063 ARHGEF11O15085 1522 aa26.64■■□□□ 1.85
PRPF40B-211ENST00000551063 CHD1O14646 1710 aa26.59■■□□□ 1.85
PRPF40B-211ENST00000551063 PBRM1Q86U86 1689 aa26.58■■□□□ 1.85
PRPF40B-211ENST00000551063 SYNJ2O15056 1496 aa26.58■■□□□ 1.85
PRPF40B-211ENST00000551063 CHMP7Q8WUX9 453 aaPredicted RBP26.54■■□□□ 1.84
PRPF40B-211ENST00000551063 ERICH3Q5RHP9 1530 aa26.5■■□□□ 1.83
PRPF40B-211ENST00000551063 CYB5RLQ6IPT4 315 aa26.5■■□□□ 1.83
PRPF40B-211ENST00000551063 ADAMTS12P58397 1594 aa26.46■■□□□ 1.83
PRPF40B-211ENST00000551063 FHAD1B1AJZ9 1412 aa26.44■■□□□ 1.82
PRPF40B-211ENST00000551063 KIF27Q86VH2 1401 aa26.44■■□□□ 1.82
PRPF40B-211ENST00000551063 GRIN2AQ12879 1464 aa26.39■■□□□ 1.82
PRPF40B-211ENST00000551063 CLASP1Q7Z460 1538 aa26.38■■□□□ 1.81
PRPF40B-211ENST00000551063 ARAP1Q96P48 1450 aa26.36■■□□□ 1.81
PRPF40B-211ENST00000551063 IGF1RP08069 1367 aa26.31■■□□□ 1.8
PRPF40B-211ENST00000551063 NUP160Q12769 1436 aa26.31■■□□□ 1.8
PRPF40B-211ENST00000551063 CUL7Q14999 1698 aa26.23■■□□□ 1.79
PRPF40B-211ENST00000551063 CEP170Q5SW79 1584 aa26.23■■□□□ 1.79
PRPF40B-211ENST00000551063 TRHP20396 242 aaPredicted RBP26.21■■□□□ 1.79
PRPF40B-211ENST00000551063 CARMIL1Q5VZK9 1371 aa26.15■■□□□ 1.78
PRPF40B-211ENST00000551063 RUSC2Q8N2Y8 1516 aa26.09■■□□□ 1.77
PRPF40B-211ENST00000551063 SHROOM2Q13796 1616 aa26.06■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms