RNA–Protein interactions for RNA: ENST00000550974.1

GPN3-208, Transcript of GPN-loop GTPase 3, humanhuman

TSL 5

Gene GPN3, Length 564 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPN3-208ENST00000550974 NISCHQ9Y2I1 1504 aa29.56■■■□□ 2.32
GPN3-208ENST00000550974 ABCC9O60706 1549 aa28.18■■■□□ 2.1
GPN3-208ENST00000550974 DNAJC5BQ9UF47 199 aa27.47■■□□□ 1.99
GPN3-208ENST00000550974 CCDC180Q9P1Z9 1646 aa26.92■■□□□ 1.9
GPN3-208ENST00000550974 RB1CC1Q8TDY2 1594 aa26.24■■□□□ 1.79
GPN3-208ENST00000550974 PABPN1Q86U42 306 aaKnown RBP eCLIP26.13■■□□□ 1.77
GPN3-208ENST00000550974 DNAJC5Q9H3Z4 198 aa26.01■■□□□ 1.75
GPN3-208ENST00000550974 NACADO15069 1562 aa25.78■■□□□ 1.72
GPN3-208ENST00000550974 DCAF8L2P0C7V8 631 aa25.64■■□□□ 1.7
GPN3-208ENST00000550974 UNC13AQ9UPW8 1703 aa25.59■■□□□ 1.69
GPN3-208ENST00000550974 BICRAQ9NZM4 1560 aa25.52■■□□□ 1.68
GPN3-208ENST00000550974 CECR2Q9BXF3 1484 aa25.48■■□□□ 1.67
GPN3-208ENST00000550974 CC2D2AQ9P2K1 1620 aa25.34■■□□□ 1.65
GPN3-208ENST00000550974 EIF4G1Q04637 1599 aaKnown RBP25■■□□□ 1.59
GPN3-208ENST00000550974 MYO15BQ96JP2 1530 aa24.99■■□□□ 1.59
GPN3-208ENST00000550974 SHROOM4Q9ULL8 1493 aa24.98■■□□□ 1.59
GPN3-208ENST00000550974 CUX2O14529 1486 aa24.67■■□□□ 1.54
GPN3-208ENST00000550974 SCRIBQ14160 1630 aa24.57■■□□□ 1.52
GPN3-208ENST00000550974 TRIM41Q8WV44 630 aa24.51■■□□□ 1.51
GPN3-208ENST00000550974 ERCC6Q03468 1493 aa24.41■■□□□ 1.5
GPN3-208ENST00000550974 DCAF1Q9Y4B6 1507 aa24.28■■□□□ 1.48
GPN3-208ENST00000550974 ZCCHC6Q5VYS8 1495 aaKnown RBP24.24■■□□□ 1.47
GPN3-208ENST00000550974 NESP48681 1621 aa23.88■■□□□ 1.41
GPN3-208ENST00000550974 NCAPD3P42695 1498 aa23.84■■□□□ 1.41
GPN3-208ENST00000550974 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
GPN3-208ENST00000550974 ATAD2BQ9ULI0 1458 aa23.62■■□□□ 1.37
GPN3-208ENST00000550974 SMARCA2P51531 1590 aa23.62■■□□□ 1.37
GPN3-208ENST00000550974 HMGXB3Q12766 1538 aa23.51■■□□□ 1.35
GPN3-208ENST00000550974 KIF21AQ7Z4S6 1674 aa23.45■■□□□ 1.34
GPN3-208ENST00000550974 LAMC3Q9Y6N6 1575 aa23.45■■□□□ 1.34
GPN3-208ENST00000550974 OSCARQ8IYS5 282 aa23.45■■□□□ 1.34
GPN3-208ENST00000550974 BAZ1AQ9NRL2 1556 aaPredicted RBP23.41■■□□□ 1.34
GPN3-208ENST00000550974 PDS5BQ9NTI5 1447 aa23.41■■□□□ 1.34
GPN3-208ENST00000550974 BAZ1BQ9UIG0 1483 aaKnown RBP23.34■■□□□ 1.33
GPN3-208ENST00000550974 AEBP2Q6ZN18 517 aaPredicted RBP23.32■■□□□ 1.32
GPN3-208ENST00000550974 SMARCA4P51532 1647 aa23.28■■□□□ 1.32
GPN3-208ENST00000550974 MRC2Q9UBG0 1479 aa23.26■■□□□ 1.31
GPN3-208ENST00000550974 WDR62O43379 1518 aa23.21■■□□□ 1.31
GPN3-208ENST00000550974 RIMBP3CA6NJZ7 1639 aa23.2■■□□□ 1.3
GPN3-208ENST00000550974 RIMBP3BA6NNM3 1639 aa23.2■■□□□ 1.3
GPN3-208ENST00000550974 RIMBP3Q9UFD9 1639 aa23.2■■□□□ 1.3
GPN3-208ENST00000550974 TRHP20396 242 aaPredicted RBP23.17■■□□□ 1.3
GPN3-208ENST00000550974 CADPSQ9ULU8 1353 aa23.09■■□□□ 1.29
GPN3-208ENST00000550974 CYB5RLQ6IPT4 315 aa23.03■■□□□ 1.28
GPN3-208ENST00000550974 ARHGEF11O15085 1522 aa23.02■■□□□ 1.28
GPN3-208ENST00000550974 PEG3Q9GZU2 1588 aa23.01■■□□□ 1.27
GPN3-208ENST00000550974 CEP164Q9UPV0 1460 aa22.95■■□□□ 1.26
GPN3-208ENST00000550974 FANCD2Q9BXW9 1451 aa22.84■■□□□ 1.25
GPN3-208ENST00000550974 MROH2BQ7Z745 1585 aa22.8■■□□□ 1.24
GPN3-208ENST00000550974 ARAP1Q96P48 1450 aa22.73■■□□□ 1.23
GPN3-208ENST00000550974 URB2Q14146 1524 aaKnown RBP22.71■■□□□ 1.23
GPN3-208ENST00000550974 ZNF608Q9ULD9 1512 aaPredicted RBP22.64■■□□□ 1.21
GPN3-208ENST00000550974 CFTRP13569 1480 aa22.56■■□□□ 1.2
GPN3-208ENST00000550974 IFT140Q96RY7 1462 aa22.53■■□□□ 1.2
GPN3-208ENST00000550974 RSF1Q96T23 1441 aaPredicted RBP22.48■■□□□ 1.19
GPN3-208ENST00000550974 ILDR1Q86SU0 546 aaPredicted RBP22.48■■□□□ 1.19
GPN3-208ENST00000550974 FBLN2P98095 1184 aa22.47■■□□□ 1.19
GPN3-208ENST00000550974 WIZO95785 1651 aa22.46■■□□□ 1.19
GPN3-208ENST00000550974 CHD1O14646 1710 aa22.43■■□□□ 1.18
GPN3-208ENST00000550974 EIF4G3O43432 1585 aaKnown RBP22.4■■□□□ 1.18
GPN3-208ENST00000550974 AQRO60306 1485 aaKnown RBP eCLIP22.31■■□□□ 1.16
GPN3-208ENST00000550974 TOPBP1Q92547 1522 aa22.26■■□□□ 1.15
GPN3-208ENST00000550974 CLASP1Q7Z460 1538 aa22.16■■□□□ 1.14
GPN3-208ENST00000550974 PRDM2Q13029 1718 aa22.13■■□□□ 1.13
GPN3-208ENST00000550974 TARBP1Q13395 1621 aaKnown RBP22.11■■□□□ 1.13
GPN3-208ENST00000550974 ABCC8Q09428 1581 aa22.11■■□□□ 1.13
GPN3-208ENST00000550974 CHMP7Q8WUX9 453 aaPredicted RBP22.07■■□□□ 1.12
GPN3-208ENST00000550974 GAPVD1Q14C86 1478 aa22.07■■□□□ 1.12
GPN3-208ENST00000550974 TOP2AP11388 1531 aaKnown RBP22.06■■□□□ 1.12
GPN3-208ENST00000550974 SYNJ1O43426 1573 aa22.05■■□□□ 1.12
GPN3-208ENST00000550974 DNMBPQ6XZF7 1577 aa22.04■■□□□ 1.12
GPN3-208ENST00000550974 SNAPC4Q5SXM2 1469 aa22.03■■□□□ 1.12
GPN3-208ENST00000550974 TDRD9Q8NDG6 1382 aaKnown RBP22.01■■□□□ 1.11
GPN3-208ENST00000550974 KDM4FA0A1W2PPD8 638 aa21.97■■□□□ 1.11
GPN3-208ENST00000550974 POLA1P09884 1462 aaPredicted RBP21.96■■□□□ 1.11
GPN3-208ENST00000550974 RAD54L2Q9Y4B4 1467 aa21.96■■□□□ 1.11
GPN3-208ENST00000550974 SOGA1O94964 1423 aa21.89■■□□□ 1.1
GPN3-208ENST00000550974 CCDC88BA6NC98 1476 aa21.88■■□□□ 1.09
GPN3-208ENST00000550974 MAGI1Q96QZ7 1491 aaPredicted RBP21.87■■□□□ 1.09
GPN3-208ENST00000550974 SYNJ2O15056 1496 aa21.83■■□□□ 1.09
GPN3-208ENST00000550974 KIF13AQ9H1H9 1805 aa21.79■■□□□ 1.08
GPN3-208ENST00000550974 ERCC6L2Q5T890 1561 aa21.78■■□□□ 1.08
GPN3-208ENST00000550974 GRIN2BQ13224 1484 aa21.78■■□□□ 1.08
GPN3-208ENST00000550974 WDR97A6NE52 1622 aa21.75■■□□□ 1.07
GPN3-208ENST00000550974 FAM69CQ0P6D2 419 aa21.71■■□□□ 1.07
GPN3-208ENST00000550974 FGD5Q6ZNL6 1462 aa21.68■■□□□ 1.06
GPN3-208ENST00000550974 KDM6BO15054 1643 aa21.62■■□□□ 1.05
GPN3-208ENST00000550974 CEP170Q5SW79 1584 aa21.61■■□□□ 1.05
GPN3-208ENST00000550974 ABCC10Q5T3U5 1492 aa21.59■■□□□ 1.05
GPN3-208ENST00000550974 PBRM1Q86U86 1689 aa21.57■■□□□ 1.04
GPN3-208ENST00000550974 HECW2Q9P2P5 1572 aa21.53■■□□□ 1.04
GPN3-208ENST00000550974 NPM1P06748 294 aaKnown RBP eCLIP21.52■■□□□ 1.04
GPN3-208ENST00000550974 FBXO41Q8TF61 875 aa21.51■■□□□ 1.03
GPN3-208ENST00000550974 GRIN2AQ12879 1464 aa21.51■■□□□ 1.03
GPN3-208ENST00000550974 ADGRL1O94910 1474 aa21.48■■□□□ 1.03
GPN3-208ENST00000550974 DIP2BQ9P265 1576 aa21.48■■□□□ 1.03
GPN3-208ENST00000550974 CUX1P39880 1505 aa21.46■■□□□ 1.03
GPN3-208ENST00000550974 NUP160Q12769 1436 aa21.46■■□□□ 1.03
GPN3-208ENST00000550974 SHROOM2Q13796 1616 aa21.44■■□□□ 1.02
GPN3-208ENST00000550974 MAPKBP1O60336 1514 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms