RNA–Protein interactions for RNA: ENST00000550929.5

LETMD1-228, Transcript of LETM1 domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LETMD1, Length 1,389 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-228ENST00000550929 AEBP2Q6ZN18 517 aaPredicted RBP24.27■■□□□ 1.48
LETMD1-228ENST00000550929 CHIC1Q5VXU3 224 aa23.07■■□□□ 1.28
LETMD1-228ENST00000550929 NISCHQ9Y2I1 1504 aa22.44■■□□□ 1.18
LETMD1-228ENST00000550929 SENP3Q9H4L4 574 aaPredicted RBP20.68■□□□□ 0.9
LETMD1-228ENST00000550929 PHF23Q9BUL5 403 aaPredicted RBP20.4■□□□□ 0.86
LETMD1-228ENST00000550929 ABCC9O60706 1549 aa20.16■□□□□ 0.82
LETMD1-228ENST00000550929 CCDC180Q9P1Z9 1646 aa20.01■□□□□ 0.79
LETMD1-228ENST00000550929 FOXD1Q16676 465 aa19.28■□□□□ 0.68
LETMD1-228ENST00000550929 DCAF8L2P0C7V8 631 aa19.13■□□□□ 0.65
LETMD1-228ENST00000550929 RB1CC1Q8TDY2 1594 aa19.09■□□□□ 0.65
LETMD1-228ENST00000550929 NACADO15069 1562 aa18.95■□□□□ 0.62
LETMD1-228ENST00000550929 DNAJC5BQ9UF47 199 aa18.91■□□□□ 0.62
LETMD1-228ENST00000550929 PABPN1Q86U42 306 aaKnown RBP eCLIP18.84■□□□□ 0.61
LETMD1-228ENST00000550929 MYO15BQ96JP2 1530 aa18.66■□□□□ 0.58
LETMD1-228ENST00000550929 UNC13AQ9UPW8 1703 aa18.62■□□□□ 0.57
LETMD1-228ENST00000550929 ZCCHC6Q5VYS8 1495 aaKnown RBP18.6■□□□□ 0.57
LETMD1-228ENST00000550929 BICRAQ9NZM4 1560 aa18.55■□□□□ 0.56
LETMD1-228ENST00000550929 DCAF1Q9Y4B6 1507 aa18.46■□□□□ 0.55
LETMD1-228ENST00000550929 PLPPR3Q6T4P5 718 aa18.42■□□□□ 0.54
LETMD1-228ENST00000550929 SCRIBQ14160 1630 aa18.38■□□□□ 0.53
LETMD1-228ENST00000550929 SHROOM4Q9ULL8 1493 aa18.2■□□□□ 0.5
LETMD1-228ENST00000550929 CC2D2AQ9P2K1 1620 aa18.13■□□□□ 0.49
LETMD1-228ENST00000550929 CECR2Q9BXF3 1484 aa18.11■□□□□ 0.49
LETMD1-228ENST00000550929 EIF4G1Q04637 1599 aaKnown RBP18.09■□□□□ 0.49
LETMD1-228ENST00000550929 PPP6R1Q9UPN7 881 aa18.04■□□□□ 0.48
LETMD1-228ENST00000550929 MSH5O43196 834 aa18.03■□□□□ 0.48
LETMD1-228ENST00000550929 PIAS4Q8N2W9 510 aaPredicted RBP17.99■□□□□ 0.47
LETMD1-228ENST00000550929 ADRA2BP18089 450 aa17.95■□□□□ 0.46
LETMD1-228ENST00000550929 POTEDQ86YR6 584 aa17.55■□□□□ 0.4
LETMD1-228ENST00000550929 NCAPD3P42695 1498 aa17.54■□□□□ 0.4
LETMD1-228ENST00000550929 ATAD2BQ9ULI0 1458 aa17.52■□□□□ 0.4
LETMD1-228ENST00000550929 SMARCA4P51532 1647 aa17.48■□□□□ 0.39
LETMD1-228ENST00000550929 SMARCA2P51531 1590 aa17.42■□□□□ 0.38
LETMD1-228ENST00000550929 BAZ1AQ9NRL2 1556 aaPredicted RBP17.39■□□□□ 0.37
LETMD1-228ENST00000550929 HMGXB3Q12766 1538 aa17.37■□□□□ 0.37
LETMD1-228ENST00000550929 ERCC6Q03468 1493 aa17.36■□□□□ 0.37
LETMD1-228ENST00000550929 BAZ1BQ9UIG0 1483 aaKnown RBP17.35■□□□□ 0.37
LETMD1-228ENST00000550929 MROH2BQ7Z745 1585 aa17.34■□□□□ 0.37
LETMD1-228ENST00000550929 NESP48681 1621 aa17.32■□□□□ 0.36
LETMD1-228ENST00000550929 DNAJC5Q9H3Z4 198 aa17.26■□□□□ 0.35
LETMD1-228ENST00000550929 PEG3Q9GZU2 1588 aa17.25■□□□□ 0.35
LETMD1-228ENST00000550929 CUX2O14529 1486 aa17.23■□□□□ 0.35
LETMD1-228ENST00000550929 WIZO95785 1651 aa17.12■□□□□ 0.33
LETMD1-228ENST00000550929 LAMC3Q9Y6N6 1575 aa17.1■□□□□ 0.33
LETMD1-228ENST00000550929 PDS5BQ9NTI5 1447 aa17.05■□□□□ 0.32
LETMD1-228ENST00000550929 CADPSQ9ULU8 1353 aa17.04■□□□□ 0.32
LETMD1-228ENST00000550929 THOC2Q8NI27 1593 aaKnown RBP17.03■□□□□ 0.32
LETMD1-228ENST00000550929 KIF21AQ7Z4S6 1674 aa17.01■□□□□ 0.31
LETMD1-228ENST00000550929 RSF1Q96T23 1441 aaPredicted RBP17■□□□□ 0.31
LETMD1-228ENST00000550929 MRC2Q9UBG0 1479 aa16.9■□□□□ 0.3
LETMD1-228ENST00000550929 TOP2AP11388 1531 aaKnown RBP16.87■□□□□ 0.29
LETMD1-228ENST00000550929 FANCD2Q9BXW9 1451 aa16.86■□□□□ 0.29
LETMD1-228ENST00000550929 CEP164Q9UPV0 1460 aa16.85■□□□□ 0.29
LETMD1-228ENST00000550929 CFTRP13569 1480 aa16.83■□□□□ 0.29
LETMD1-228ENST00000550929 WDR62O43379 1518 aa16.81■□□□□ 0.28
LETMD1-228ENST00000550929 CCDC88BA6NC98 1476 aa16.74■□□□□ 0.27
LETMD1-228ENST00000550929 URB2Q14146 1524 aaKnown RBP16.71■□□□□ 0.27
LETMD1-228ENST00000550929 TRIM41Q8WV44 630 aa16.63■□□□□ 0.25
LETMD1-228ENST00000550929 OSCARQ8IYS5 282 aa16.56■□□□□ 0.24
LETMD1-228ENST00000550929 PRDM2Q13029 1718 aa16.55■□□□□ 0.24
LETMD1-228ENST00000550929 TOPBP1Q92547 1522 aa16.53■□□□□ 0.24
LETMD1-228ENST00000550929 ZNF608Q9ULD9 1512 aaPredicted RBP16.52■□□□□ 0.24
LETMD1-228ENST00000550929 IFT140Q96RY7 1462 aa16.5■□□□□ 0.23
LETMD1-228ENST00000550929 MAPK8IP2Q13387 824 aaPredicted RBP16.48■□□□□ 0.23
LETMD1-228ENST00000550929 ABCC8Q09428 1581 aa16.45■□□□□ 0.22
LETMD1-228ENST00000550929 SUPT5HO00267 1087 aaKnown RBP16.44■□□□□ 0.22
LETMD1-228ENST00000550929 DNMBPQ6XZF7 1577 aa16.43■□□□□ 0.22
LETMD1-228ENST00000550929 SCAF1Q9H7N4 1312 aaKnown RBP16.43■□□□□ 0.22
LETMD1-228ENST00000550929 DMRT2Q9Y5R5 561 aa16.42■□□□□ 0.22
LETMD1-228ENST00000550929 AQRO60306 1485 aaKnown RBP eCLIP16.4■□□□□ 0.221e-6■■□□□ 12.7
LETMD1-228ENST00000550929 POLA1P09884 1462 aaPredicted RBP16.37■□□□□ 0.21
LETMD1-228ENST00000550929 RAD54L2Q9Y4B4 1467 aa16.37■□□□□ 0.21
LETMD1-228ENST00000550929 EIF4G3O43432 1585 aaKnown RBP16.36■□□□□ 0.21
LETMD1-228ENST00000550929 FBLN2P98095 1184 aa16.36■□□□□ 0.21
LETMD1-228ENST00000550929 TARBP1Q13395 1621 aaKnown RBP16.34■□□□□ 0.21
LETMD1-228ENST00000550929 SOGA1O94964 1423 aa16.34■□□□□ 0.21
LETMD1-228ENST00000550929 TDRD9Q8NDG6 1382 aaKnown RBP16.33■□□□□ 0.2
LETMD1-228ENST00000550929 FGD5Q6ZNL6 1462 aa16.29■□□□□ 0.2
LETMD1-228ENST00000550929 RIMBP3CA6NJZ7 1639 aa16.28■□□□□ 0.2
LETMD1-228ENST00000550929 RIMBP3BA6NNM3 1639 aa16.28■□□□□ 0.2
LETMD1-228ENST00000550929 RIMBP3Q9UFD9 1639 aa16.28■□□□□ 0.2
LETMD1-228ENST00000550929 CUX1P39880 1505 aa16.27■□□□□ 0.2
LETMD1-228ENST00000550929 ARHGEF11O15085 1522 aa16.24■□□□□ 0.19
LETMD1-228ENST00000550929 CYB5RLQ6IPT4 315 aa16.23■□□□□ 0.19
LETMD1-228ENST00000550929 CHD1O14646 1710 aa16.22■□□□□ 0.19
LETMD1-228ENST00000550929 SNAPC4Q5SXM2 1469 aa16.2■□□□□ 0.18
LETMD1-228ENST00000550929 CHMP7Q8WUX9 453 aaPredicted RBP16.19■□□□□ 0.18
LETMD1-228ENST00000550929 PPP4R3CPQ6ZMV5 832 aa16.14■□□□□ 0.17
LETMD1-228ENST00000550929 GRIN2BQ13224 1484 aa16.14■□□□□ 0.17
LETMD1-228ENST00000550929 GAPVD1Q14C86 1478 aa16.1■□□□□ 0.17
LETMD1-228ENST00000550929 ARAP1Q96P48 1450 aa16.1■□□□□ 0.17
LETMD1-228ENST00000550929 MAGI1Q96QZ7 1491 aaPredicted RBP16.1■□□□□ 0.17
LETMD1-228ENST00000550929 WDR97A6NE52 1622 aa16.09■□□□□ 0.17
LETMD1-228ENST00000550929 ABCA10Q8WWZ4 1543 aa16.07■□□□□ 0.16
LETMD1-228ENST00000550929 SYNJ2O15056 1496 aa16.06■□□□□ 0.16
LETMD1-228ENST00000550929 TRHP20396 242 aaPredicted RBP16.05■□□□□ 0.16
LETMD1-228ENST00000550929 SYNJ1O43426 1573 aa16.04■□□□□ 0.16
LETMD1-228ENST00000550929 CLASP1Q7Z460 1538 aa16.04■□□□□ 0.16
LETMD1-228ENST00000550929 WRNQ14191 1432 aaPredicted RBP eCLIP16.04■□□□□ 0.16
LETMD1-228ENST00000550929 PBRM1Q86U86 1689 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms