RNA–Protein interactions for RNA: ENST00000550798.1

PPFIA2-221, Transcript of PTPRF interacting protein alpha 2, humanhuman

TSL 3

Gene PPFIA2, Length 582 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA2-221ENST00000550798 NISCHQ9Y2I1 1504 aa29.2■■■□□ 2.27
PPFIA2-221ENST00000550798 CCDC180Q9P1Z9 1646 aa26.24■■□□□ 1.79
PPFIA2-221ENST00000550798 ABCC9O60706 1549 aa26.12■■□□□ 1.77
PPFIA2-221ENST00000550798 RB1CC1Q8TDY2 1594 aa24.93■■□□□ 1.58
PPFIA2-221ENST00000550798 NACADO15069 1562 aa24.77■■□□□ 1.56
PPFIA2-221ENST00000550798 DCAF8L2P0C7V8 631 aa24.63■■□□□ 1.53
PPFIA2-221ENST00000550798 MYO15BQ96JP2 1530 aa24.44■■□□□ 1.5
PPFIA2-221ENST00000550798 DNAJC5BQ9UF47 199 aa24.39■■□□□ 1.49
PPFIA2-221ENST00000550798 UNC13AQ9UPW8 1703 aa24.38■■□□□ 1.49
PPFIA2-221ENST00000550798 PABPN1Q86U42 306 aaKnown RBP eCLIP24.3■■□□□ 1.48
PPFIA2-221ENST00000550798 ZCCHC6Q5VYS8 1495 aaKnown RBP24.22■■□□□ 1.47
PPFIA2-221ENST00000550798 BICRAQ9NZM4 1560 aa24.16■■□□□ 1.46
PPFIA2-221ENST00000550798 DCAF1Q9Y4B6 1507 aa24.15■■□□□ 1.46
PPFIA2-221ENST00000550798 SHROOM4Q9ULL8 1493 aa23.89■■□□□ 1.42
PPFIA2-221ENST00000550798 SCRIBQ14160 1630 aa23.86■■□□□ 1.41
PPFIA2-221ENST00000550798 CC2D2AQ9P2K1 1620 aa23.62■■□□□ 1.37
PPFIA2-221ENST00000550798 EIF4G1Q04637 1599 aaKnown RBP23.58■■□□□ 1.37
PPFIA2-221ENST00000550798 CECR2Q9BXF3 1484 aa23.53■■□□□ 1.36
PPFIA2-221ENST00000550798 NCAPD3P42695 1498 aa22.84■■□□□ 1.25
PPFIA2-221ENST00000550798 SMARCA4P51532 1647 aa22.79■■□□□ 1.24
PPFIA2-221ENST00000550798 ATAD2BQ9ULI0 1458 aa22.78■■□□□ 1.24
PPFIA2-221ENST00000550798 SMARCA2P51531 1590 aa22.75■■□□□ 1.23
PPFIA2-221ENST00000550798 HMGXB3Q12766 1538 aa22.7■■□□□ 1.22
PPFIA2-221ENST00000550798 BAZ1AQ9NRL2 1556 aaPredicted RBP22.69■■□□□ 1.22
PPFIA2-221ENST00000550798 ERCC6Q03468 1493 aa22.58■■□□□ 1.2
PPFIA2-221ENST00000550798 BAZ1BQ9UIG0 1483 aaKnown RBP22.58■■□□□ 1.2
PPFIA2-221ENST00000550798 PEG3Q9GZU2 1588 aa22.57■■□□□ 1.2
PPFIA2-221ENST00000550798 CUX2O14529 1486 aa22.52■■□□□ 1.2
PPFIA2-221ENST00000550798 MROH2BQ7Z745 1585 aa22.48■■□□□ 1.19
PPFIA2-221ENST00000550798 NESP48681 1621 aa22.44■■□□□ 1.18
PPFIA2-221ENST00000550798 DNAJC5Q9H3Z4 198 aa22.4■■□□□ 1.18
PPFIA2-221ENST00000550798 LAMC3Q9Y6N6 1575 aa22.35■■□□□ 1.17
PPFIA2-221ENST00000550798 WIZO95785 1651 aa22.25■■□□□ 1.15
PPFIA2-221ENST00000550798 THOC2Q8NI27 1593 aaKnown RBP22.23■■□□□ 1.15
PPFIA2-221ENST00000550798 PDS5BQ9NTI5 1447 aa22.21■■□□□ 1.15
PPFIA2-221ENST00000550798 KIF21AQ7Z4S6 1674 aa22.2■■□□□ 1.15
PPFIA2-221ENST00000550798 CADPSQ9ULU8 1353 aa22.14■■□□□ 1.14
PPFIA2-221ENST00000550798 RSF1Q96T23 1441 aaPredicted RBP22.04■■□□□ 1.12
PPFIA2-221ENST00000550798 MRC2Q9UBG0 1479 aa22■■□□□ 1.11
PPFIA2-221ENST00000550798 TOP2AP11388 1531 aaKnown RBP21.98■■□□□ 1.11
PPFIA2-221ENST00000550798 WDR62O43379 1518 aa21.95■■□□□ 1.1
PPFIA2-221ENST00000550798 CEP164Q9UPV0 1460 aa21.93■■□□□ 1.1
PPFIA2-221ENST00000550798 CFTRP13569 1480 aa21.9■■□□□ 1.1
PPFIA2-221ENST00000550798 FANCD2Q9BXW9 1451 aa21.9■■□□□ 1.1
PPFIA2-221ENST00000550798 PRDM2Q13029 1718 aa21.77■■□□□ 1.08
PPFIA2-221ENST00000550798 CCDC88BA6NC98 1476 aa21.71■■□□□ 1.07
PPFIA2-221ENST00000550798 URB2Q14146 1524 aaKnown RBP21.7■■□□□ 1.06
PPFIA2-221ENST00000550798 TOPBP1Q92547 1522 aa21.5■■□□□ 1.03
PPFIA2-221ENST00000550798 ABCC8Q09428 1581 aa21.49■■□□□ 1.03
PPFIA2-221ENST00000550798 OSCARQ8IYS5 282 aa21.49■■□□□ 1.03
PPFIA2-221ENST00000550798 IFT140Q96RY7 1462 aa21.49■■□□□ 1.03
PPFIA2-221ENST00000550798 TRIM41Q8WV44 630 aa21.45■■□□□ 1.02
PPFIA2-221ENST00000550798 DNMBPQ6XZF7 1577 aa21.44■■□□□ 1.02
PPFIA2-221ENST00000550798 ZNF608Q9ULD9 1512 aaPredicted RBP21.41■■□□□ 1.02
PPFIA2-221ENST00000550798 EIF4G3O43432 1585 aaKnown RBP21.34■■□□□ 1.01
PPFIA2-221ENST00000550798 TARBP1Q13395 1621 aaKnown RBP21.3■■□□□ 1
PPFIA2-221ENST00000550798 POLA1P09884 1462 aaPredicted RBP21.27■■□□□ 1
PPFIA2-221ENST00000550798 AQRO60306 1485 aaKnown RBP eCLIP21.23■□□□□ 0.99
PPFIA2-221ENST00000550798 RIMBP3CA6NJZ7 1639 aa21.21■□□□□ 0.99
PPFIA2-221ENST00000550798 RIMBP3BA6NNM3 1639 aa21.21■□□□□ 0.99
PPFIA2-221ENST00000550798 RIMBP3Q9UFD9 1639 aa21.21■□□□□ 0.99
PPFIA2-221ENST00000550798 CHD1O14646 1710 aa21.18■□□□□ 0.98
PPFIA2-221ENST00000550798 SOGA1O94964 1423 aa21.18■□□□□ 0.98
PPFIA2-221ENST00000550798 RAD54L2Q9Y4B4 1467 aa21.18■□□□□ 0.98
PPFIA2-221ENST00000550798 FGD5Q6ZNL6 1462 aa21.15■□□□□ 0.98
PPFIA2-221ENST00000550798 WDR97A6NE52 1622 aa21.14■□□□□ 0.97
PPFIA2-221ENST00000550798 ARHGEF11O15085 1522 aa21.14■□□□□ 0.97
PPFIA2-221ENST00000550798 CUX1P39880 1505 aa21.13■□□□□ 0.97
PPFIA2-221ENST00000550798 SUPT5HO00267 1087 aaKnown RBP21.12■□□□□ 0.97
PPFIA2-221ENST00000550798 TDRD9Q8NDG6 1382 aaKnown RBP21.11■□□□□ 0.97
PPFIA2-221ENST00000550798 FBLN2P98095 1184 aa21.1■□□□□ 0.97
PPFIA2-221ENST00000550798 SNAPC4Q5SXM2 1469 aa21.03■□□□□ 0.96
PPFIA2-221ENST00000550798 GRIN2BQ13224 1484 aa21■□□□□ 0.95
PPFIA2-221ENST00000550798 MAGI1Q96QZ7 1491 aaPredicted RBP21■□□□□ 0.95
PPFIA2-221ENST00000550798 CYB5RLQ6IPT4 315 aa20.97■□□□□ 0.95
PPFIA2-221ENST00000550798 CHMP7Q8WUX9 453 aaPredicted RBP20.97■□□□□ 0.95
PPFIA2-221ENST00000550798 PBRM1Q86U86 1689 aa20.96■□□□□ 0.95
PPFIA2-221ENST00000550798 SYNJ1O43426 1573 aa20.94■□□□□ 0.94
PPFIA2-221ENST00000550798 SYNJ2O15056 1496 aa20.93■□□□□ 0.94
PPFIA2-221ENST00000550798 GAPVD1Q14C86 1478 aa20.93■□□□□ 0.94
PPFIA2-221ENST00000550798 ABCA10Q8WWZ4 1543 aa20.92■□□□□ 0.94
PPFIA2-221ENST00000550798 CLASP1Q7Z460 1538 aa20.91■□□□□ 0.94
PPFIA2-221ENST00000550798 ARAP1Q96P48 1450 aa20.91■□□□□ 0.94
PPFIA2-221ENST00000550798 ABCA5Q8WWZ7 1642 aa20.89■□□□□ 0.93
PPFIA2-221ENST00000550798 WRNQ14191 1432 aaPredicted RBP eCLIP20.85■□□□□ 0.93
PPFIA2-221ENST00000550798 BIVM-ERCC5R4GMW8 1640 aa20.85■□□□□ 0.93
PPFIA2-221ENST00000550798 TOP2BQ02880 1626 aa20.84■□□□□ 0.93
PPFIA2-221ENST00000550798 TRHP20396 242 aaPredicted RBP20.74■□□□□ 0.91
PPFIA2-221ENST00000550798 GRIN2AQ12879 1464 aa20.73■□□□□ 0.91
PPFIA2-221ENST00000550798 ADAMTS12P58397 1594 aa20.72■□□□□ 0.91
PPFIA2-221ENST00000550798 ERICH3Q5RHP9 1530 aa20.68■□□□□ 0.9
PPFIA2-221ENST00000550798 FHAD1B1AJZ9 1412 aa20.67■□□□□ 0.9
PPFIA2-221ENST00000550798 CEP170Q5SW79 1584 aa20.64■□□□□ 0.9
PPFIA2-221ENST00000550798 NUP160Q12769 1436 aa20.64■□□□□ 0.89
PPFIA2-221ENST00000550798 SHROOM2Q13796 1616 aa20.56■□□□□ 0.88
PPFIA2-221ENST00000550798 ERCC6L2Q5T890 1561 aa20.56■□□□□ 0.88
PPFIA2-221ENST00000550798 PRG4Q92954 1404 aaPredicted RBP20.44■□□□□ 0.86
PPFIA2-221ENST00000550798 KIF27Q86VH2 1401 aa20.44■□□□□ 0.86
PPFIA2-221ENST00000550798 RUSC2Q8N2Y8 1516 aa20.43■□□□□ 0.86
PPFIA2-221ENST00000550798 JPH4Q96JJ6 628 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms