RNA–Protein interactions for RNA: ENST00000550519.5

SMARCC2-210, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, humanhuman

TSL 3

Gene SMARCC2, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC2-210ENST00000550519 NISCHQ9Y2I1 1504 aa54.49■■■■■ 6.31
SMARCC2-210ENST00000550519 ABCC9O60706 1549 aa48.9■■■■■ 5.42
SMARCC2-210ENST00000550519 CCDC180Q9P1Z9 1646 aa48.84■■■■■ 5.41
SMARCC2-210ENST00000550519 RB1CC1Q8TDY2 1594 aa46.53■■■■■ 5.04
SMARCC2-210ENST00000550519 NACADO15069 1562 aa46.23■■■■■ 4.99
SMARCC2-210ENST00000550519 DCAF8L2P0C7V8 631 aa45.99■■■■■ 4.95
SMARCC2-210ENST00000550519 DNAJC5BQ9UF47 199 aa45.97■■■■■ 4.95
SMARCC2-210ENST00000550519 MYO15BQ96JP2 1530 aa45.64■■■■■ 4.9
SMARCC2-210ENST00000550519 PABPN1Q86U42 306 aaKnown RBP eCLIP45.56■■■■■ 4.88
SMARCC2-210ENST00000550519 UNC13AQ9UPW8 1703 aa45.39■■■■■ 4.86
SMARCC2-210ENST00000550519 BICRAQ9NZM4 1560 aa45.2■■■■■ 4.83
SMARCC2-210ENST00000550519 ZCCHC6Q5VYS8 1495 aaKnown RBP45.16■■■■■ 4.82
SMARCC2-210ENST00000550519 DCAF1Q9Y4B6 1507 aa45.04■■■■■ 4.8
SMARCC2-210ENST00000550519 SHROOM4Q9ULL8 1493 aa44.62■■■■■ 4.73
SMARCC2-210ENST00000550519 SCRIBQ14160 1630 aa44.49■■■■■ 4.71
SMARCC2-210ENST00000550519 CC2D2AQ9P2K1 1620 aa44.16■■■■■ 4.66
SMARCC2-210ENST00000550519 EIF4G1Q04637 1599 aaKnown RBP44.08■■■■■ 4.65
SMARCC2-210ENST00000550519 CECR2Q9BXF3 1484 aa44.08■■■■■ 4.65
SMARCC2-210ENST00000550519 NCAPD3P42695 1498 aa42.74■■■■■ 4.43
SMARCC2-210ENST00000550519 ATAD2BQ9ULI0 1458 aa42.58■■■■■ 4.41
SMARCC2-210ENST00000550519 SMARCA4P51532 1647 aa42.47■■■■■ 4.39
SMARCC2-210ENST00000550519 SMARCA2P51531 1590 aa42.42■■■■■ 4.38
SMARCC2-210ENST00000550519 HMGXB3Q12766 1538 aa42.36■■■■■ 4.37
SMARCC2-210ENST00000550519 BAZ1AQ9NRL2 1556 aaPredicted RBP42.28■■■■■ 4.36
SMARCC2-210ENST00000550519 DNAJC5Q9H3Z4 198 aa42.23■■■■■ 4.35
SMARCC2-210ENST00000550519 ERCC6Q03468 1493 aa42.21■■■■■ 4.35
SMARCC2-210ENST00000550519 CUX2O14529 1486 aa42.18■■■■■ 4.34
SMARCC2-210ENST00000550519 BAZ1BQ9UIG0 1483 aaKnown RBP42.12■■■■■ 4.33
SMARCC2-210ENST00000550519 PEG3Q9GZU2 1588 aa42.1■■■■■ 4.33
SMARCC2-210ENST00000550519 NESP48681 1621 aa42.02■■■■■ 4.32
SMARCC2-210ENST00000550519 MROH2BQ7Z745 1585 aa41.98■■■■■ 4.31
SMARCC2-210ENST00000550519 LAMC3Q9Y6N6 1575 aa41.71■■■■■ 4.27
SMARCC2-210ENST00000550519 THOC2Q8NI27 1593 aaKnown RBP41.56■■■■■ 4.24
SMARCC2-210ENST00000550519 PDS5BQ9NTI5 1447 aa41.51■■■■■ 4.24
SMARCC2-210ENST00000550519 CADPSQ9ULU8 1353 aa41.43■■■■■ 4.22
SMARCC2-210ENST00000550519 WIZO95785 1651 aa41.42■■■■■ 4.22
SMARCC2-210ENST00000550519 KIF21AQ7Z4S6 1674 aa41.39■■■■■ 4.22
SMARCC2-210ENST00000550519 RSF1Q96T23 1441 aaPredicted RBP41.14■■■■■ 4.18
SMARCC2-210ENST00000550519 MRC2Q9UBG0 1479 aa41.13■■■■■ 4.17
SMARCC2-210ENST00000550519 WDR62O43379 1518 aa41.02■■■■■ 4.16
SMARCC2-210ENST00000550519 CFTRP13569 1480 aa40.95■■■■■ 4.15
SMARCC2-210ENST00000550519 CEP164Q9UPV0 1460 aa40.95■■■■■ 4.15
SMARCC2-210ENST00000550519 TOP2AP11388 1531 aaKnown RBP40.93■■■■■ 4.14
SMARCC2-210ENST00000550519 FANCD2Q9BXW9 1451 aa40.92■■■■■ 4.14
SMARCC2-210ENST00000550519 URB2Q14146 1524 aaKnown RBP40.58■■■■■ 4.09
SMARCC2-210ENST00000550519 CCDC88BA6NC98 1476 aa40.51■■■■■ 4.07
SMARCC2-210ENST00000550519 PRDM2Q13029 1718 aa40.37■■■■■ 4.05
SMARCC2-210ENST00000550519 TRIM41Q8WV44 630 aa40.3■■■■■ 4.04
SMARCC2-210ENST00000550519 OSCARQ8IYS5 282 aa40.28■■■■■ 4.04
SMARCC2-210ENST00000550519 IFT140Q96RY7 1462 aa40.15■■■■■ 4.02
SMARCC2-210ENST00000550519 TOPBP1Q92547 1522 aa40.14■■■■■ 4.02
SMARCC2-210ENST00000550519 ZNF608Q9ULD9 1512 aaPredicted RBP40.09■■■■■ 4.01
SMARCC2-210ENST00000550519 ABCC8Q09428 1581 aa40.06■■■■■ 4
SMARCC2-210ENST00000550519 DNMBPQ6XZF7 1577 aa39.97■■■■□ 3.99
SMARCC2-210ENST00000550519 EIF4G3O43432 1585 aaKnown RBP39.81■■■■□ 3.96
SMARCC2-210ENST00000550519 TARBP1Q13395 1621 aaKnown RBP39.77■■■■□ 3.96
SMARCC2-210ENST00000550519 AQRO60306 1485 aaKnown RBP eCLIP39.74■■■■□ 3.951e-6■■■■■ 28.4
SMARCC2-210ENST00000550519 POLA1P09884 1462 aaPredicted RBP39.74■■■■□ 3.95
SMARCC2-210ENST00000550519 RIMBP3CA6NJZ7 1639 aa39.68■■■■□ 3.94
SMARCC2-210ENST00000550519 RIMBP3BA6NNM3 1639 aa39.68■■■■□ 3.94
SMARCC2-210ENST00000550519 RIMBP3Q9UFD9 1639 aa39.68■■■■□ 3.94
SMARCC2-210ENST00000550519 RAD54L2Q9Y4B4 1467 aa39.59■■■■□ 3.93
SMARCC2-210ENST00000550519 ARHGEF11O15085 1522 aa39.59■■■■□ 3.93
SMARCC2-210ENST00000550519 SOGA1O94964 1423 aa39.57■■■■□ 3.92
SMARCC2-210ENST00000550519 TDRD9Q8NDG6 1382 aaKnown RBP39.49■■■■□ 3.91
SMARCC2-210ENST00000550519 CHD1O14646 1710 aa39.47■■■■□ 3.91
SMARCC2-210ENST00000550519 FGD5Q6ZNL6 1462 aa39.47■■■■□ 3.91
SMARCC2-210ENST00000550519 FBLN2P98095 1184 aa39.45■■■■□ 3.91
SMARCC2-210ENST00000550519 CUX1P39880 1505 aa39.44■■■■□ 3.9
SMARCC2-210ENST00000550519 WDR97A6NE52 1622 aa39.36■■■■□ 3.89
SMARCC2-210ENST00000550519 CYB5RLQ6IPT4 315 aa39.32■■■■□ 3.89
SMARCC2-210ENST00000550519 SNAPC4Q5SXM2 1469 aa39.3■■■■□ 3.88
SMARCC2-210ENST00000550519 SUPT5HO00267 1087 aaKnown RBP39.26■■■■□ 3.88
SMARCC2-210ENST00000550519 GRIN2BQ13224 1484 aa39.22■■■■□ 3.87
SMARCC2-210ENST00000550519 MAGI1Q96QZ7 1491 aaPredicted RBP39.22■■■■□ 3.87
SMARCC2-210ENST00000550519 ARAP1Q96P48 1450 aa39.21■■■■□ 3.87
SMARCC2-210ENST00000550519 CHMP7Q8WUX9 453 aaPredicted RBP39.19■■■■□ 3.86
SMARCC2-210ENST00000550519 CLASP1Q7Z460 1538 aa39.11■■■■□ 3.85
SMARCC2-210ENST00000550519 SYNJ2O15056 1496 aa39.09■■■■□ 3.85
SMARCC2-210ENST00000550519 GAPVD1Q14C86 1478 aa39.07■■■■□ 3.85
SMARCC2-210ENST00000550519 SYNJ1O43426 1573 aa39.06■■■■□ 3.84
SMARCC2-210ENST00000550519 ABCA10Q8WWZ4 1543 aa39.05■■■■□ 3.84
SMARCC2-210ENST00000550519 PBRM1Q86U86 1689 aa38.95■■■■□ 3.83
SMARCC2-210ENST00000550519 ABCA5Q8WWZ7 1642 aa38.94■■■■□ 3.82
SMARCC2-210ENST00000550519 WRNQ14191 1432 aaPredicted RBP eCLIP38.89■■■■□ 3.82
SMARCC2-210ENST00000550519 TRHP20396 242 aaPredicted RBP38.86■■■■□ 3.81
SMARCC2-210ENST00000550519 TOP2BQ02880 1626 aa38.78■■■■□ 3.8
SMARCC2-210ENST00000550519 BIVM-ERCC5R4GMW8 1640 aa38.76■■■■□ 3.8
SMARCC2-210ENST00000550519 GRIN2AQ12879 1464 aa38.71■■■■□ 3.79
SMARCC2-210ENST00000550519 ADAMTS12P58397 1594 aa38.65■■■■□ 3.78
SMARCC2-210ENST00000550519 NUP160Q12769 1436 aa38.61■■■■□ 3.77
SMARCC2-210ENST00000550519 FHAD1B1AJZ9 1412 aa38.59■■■■□ 3.77
SMARCC2-210ENST00000550519 ERICH3Q5RHP9 1530 aa38.54■■■■□ 3.76
SMARCC2-210ENST00000550519 CEP170Q5SW79 1584 aa38.54■■■■□ 3.76
SMARCC2-210ENST00000550519 ERCC6L2Q5T890 1561 aa38.49■■■■□ 3.75
SMARCC2-210ENST00000550519 SHROOM2Q13796 1616 aa38.38■■■■□ 3.74
SMARCC2-210ENST00000550519 JPH4Q96JJ6 628 aa38.23■■■■□ 3.71
SMARCC2-210ENST00000550519 PRG4Q92954 1404 aaPredicted RBP38.22■■■■□ 3.71
SMARCC2-210ENST00000550519 RUSC2Q8N2Y8 1516 aa38.1■■■■□ 3.69
SMARCC2-210ENST00000550519 IGF1RP08069 1367 aa38.09■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms