RNA–Protein interactions for RNA: ENST00000550446.5

LETMD1-224, Transcript of LETM1 domain containing 1, humanhuman

TSL 3

Gene LETMD1, Length 562 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-224ENST00000550446 NISCHQ9Y2I1 1504 aa47.19■■■■■ 5.14
LETMD1-224ENST00000550446 ABCC9O60706 1549 aa42.41■■■■■ 4.38
LETMD1-224ENST00000550446 CCDC180Q9P1Z9 1646 aa42.16■■■■■ 4.34
LETMD1-224ENST00000550446 RB1CC1Q8TDY2 1594 aa40.25■■■■■ 4.03
LETMD1-224ENST00000550446 DCAF8L2P0C7V8 631 aa40.16■■■■■ 4.02
LETMD1-224ENST00000550446 NACADO15069 1562 aa39.97■■■■□ 3.99
LETMD1-224ENST00000550446 DNAJC5BQ9UF47 199 aa39.88■■■■□ 3.97
LETMD1-224ENST00000550446 PABPN1Q86U42 306 aaKnown RBP eCLIP39.63■■■■□ 3.93
LETMD1-224ENST00000550446 MYO15BQ96JP2 1530 aa39.39■■■■□ 3.9
LETMD1-224ENST00000550446 UNC13AQ9UPW8 1703 aa39.2■■■■□ 3.87
LETMD1-224ENST00000550446 ZCCHC6Q5VYS8 1495 aaKnown RBP39.06■■■■□ 3.84
LETMD1-224ENST00000550446 BICRAQ9NZM4 1560 aa39.06■■■■□ 3.84
LETMD1-224ENST00000550446 DCAF1Q9Y4B6 1507 aa38.89■■■■□ 3.82
LETMD1-224ENST00000550446 SCRIBQ14160 1630 aa38.57■■■■□ 3.77
LETMD1-224ENST00000550446 SHROOM4Q9ULL8 1493 aa38.47■■■■□ 3.75
LETMD1-224ENST00000550446 CC2D2AQ9P2K1 1620 aa38.2■■■■□ 3.71
LETMD1-224ENST00000550446 CECR2Q9BXF3 1484 aa38.18■■■■□ 3.7
LETMD1-224ENST00000550446 EIF4G1Q04637 1599 aaKnown RBP38.12■■■■□ 3.69
LETMD1-224ENST00000550446 NCAPD3P42695 1498 aa36.97■■■■□ 3.51
LETMD1-224ENST00000550446 ATAD2BQ9ULI0 1458 aa36.87■■■■□ 3.49
LETMD1-224ENST00000550446 SMARCA4P51532 1647 aa36.74■■■■□ 3.47
LETMD1-224ENST00000550446 SMARCA2P51531 1590 aa36.7■■■■□ 3.47
LETMD1-224ENST00000550446 ERCC6Q03468 1493 aa36.61■■■■□ 3.45
LETMD1-224ENST00000550446 BAZ1AQ9NRL2 1556 aaPredicted RBP36.6■■■■□ 3.45
LETMD1-224ENST00000550446 HMGXB3Q12766 1538 aa36.59■■■■□ 3.45
LETMD1-224ENST00000550446 DNAJC5Q9H3Z4 198 aa36.58■■■■□ 3.45
LETMD1-224ENST00000550446 BAZ1BQ9UIG0 1483 aaKnown RBP36.51■■■■□ 3.44
LETMD1-224ENST00000550446 CUX2O14529 1486 aa36.44■■■■□ 3.42
LETMD1-224ENST00000550446 NESP48681 1621 aa36.42■■■■□ 3.42
LETMD1-224ENST00000550446 MROH2BQ7Z745 1585 aa36.39■■■■□ 3.42
LETMD1-224ENST00000550446 PEG3Q9GZU2 1588 aa36.35■■■■□ 3.41
LETMD1-224ENST00000550446 LAMC3Q9Y6N6 1575 aa36.06■■■■□ 3.36
LETMD1-224ENST00000550446 PDS5BQ9NTI5 1447 aa35.97■■■■□ 3.35
LETMD1-224ENST00000550446 CADPSQ9ULU8 1353 aa35.91■■■■□ 3.34
LETMD1-224ENST00000550446 WIZO95785 1651 aa35.91■■■■□ 3.34
LETMD1-224ENST00000550446 THOC2Q8NI27 1593 aaKnown RBP35.88■■■■□ 3.33
LETMD1-224ENST00000550446 KIF21AQ7Z4S6 1674 aa35.79■■■■□ 3.32
LETMD1-224ENST00000550446 RSF1Q96T23 1441 aaPredicted RBP35.69■■■■□ 3.3
LETMD1-224ENST00000550446 MRC2Q9UBG0 1479 aa35.6■■■■□ 3.29
LETMD1-224ENST00000550446 CEP164Q9UPV0 1460 aa35.47■■■■□ 3.27
LETMD1-224ENST00000550446 FANCD2Q9BXW9 1451 aa35.46■■■■□ 3.27
LETMD1-224ENST00000550446 WDR62O43379 1518 aa35.44■■■■□ 3.26
LETMD1-224ENST00000550446 CFTRP13569 1480 aa35.44■■■■□ 3.26
LETMD1-224ENST00000550446 TOP2AP11388 1531 aaKnown RBP35.43■■■■□ 3.26
LETMD1-224ENST00000550446 URB2Q14146 1524 aaKnown RBP35.15■■■■□ 3.22
LETMD1-224ENST00000550446 CCDC88BA6NC98 1476 aa35.15■■■■□ 3.22
LETMD1-224ENST00000550446 TRIM41Q8WV44 630 aa35.07■■■■□ 3.2
LETMD1-224ENST00000550446 OSCARQ8IYS5 282 aa34.99■■■■□ 3.19
LETMD1-224ENST00000550446 PRDM2Q13029 1718 aa34.84■■■■□ 3.17
LETMD1-224ENST00000550446 IFT140Q96RY7 1462 aa34.77■■■■□ 3.16
LETMD1-224ENST00000550446 TOPBP1Q92547 1522 aa34.76■■■■□ 3.16
LETMD1-224ENST00000550446 ZNF608Q9ULD9 1512 aaPredicted RBP34.75■■■■□ 3.15
LETMD1-224ENST00000550446 ABCC8Q09428 1581 aa34.69■■■■□ 3.14
LETMD1-224ENST00000550446 DNMBPQ6XZF7 1577 aa34.58■■■■□ 3.13
LETMD1-224ENST00000550446 AQRO60306 1485 aaKnown RBP eCLIP34.49■■■■□ 3.118e-7■□□□□ 10.8
LETMD1-224ENST00000550446 EIF4G3O43432 1585 aaKnown RBP34.43■■■■□ 3.1
LETMD1-224ENST00000550446 POLA1P09884 1462 aaPredicted RBP34.41■■■■□ 3.1
LETMD1-224ENST00000550446 FBLN2P98095 1184 aa34.39■■■■□ 3.1
LETMD1-224ENST00000550446 TARBP1Q13395 1621 aaKnown RBP34.38■■■■□ 3.09
LETMD1-224ENST00000550446 RAD54L2Q9Y4B4 1467 aa34.36■■■■□ 3.09
LETMD1-224ENST00000550446 SOGA1O94964 1423 aa34.36■■■■□ 3.09
LETMD1-224ENST00000550446 SUPT5HO00267 1087 aaKnown RBP34.33■■■■□ 3.09
LETMD1-224ENST00000550446 RIMBP3CA6NJZ7 1639 aa34.32■■■■□ 3.08
LETMD1-224ENST00000550446 RIMBP3BA6NNM3 1639 aa34.32■■■■□ 3.08
LETMD1-224ENST00000550446 RIMBP3Q9UFD9 1639 aa34.32■■■■□ 3.08
LETMD1-224ENST00000550446 TDRD9Q8NDG6 1382 aaKnown RBP34.32■■■■□ 3.08
LETMD1-224ENST00000550446 ARHGEF11O15085 1522 aa34.25■■■■□ 3.07
LETMD1-224ENST00000550446 FGD5Q6ZNL6 1462 aa34.21■■■■□ 3.07
LETMD1-224ENST00000550446 CYB5RLQ6IPT4 315 aa34.21■■■■□ 3.07
LETMD1-224ENST00000550446 CUX1P39880 1505 aa34.17■■■■□ 3.06
LETMD1-224ENST00000550446 CHD1O14646 1710 aa34.14■■■■□ 3.06
LETMD1-224ENST00000550446 CHMP7Q8WUX9 453 aaPredicted RBP34.1■■■■□ 3.05
LETMD1-224ENST00000550446 SNAPC4Q5SXM2 1469 aa34.07■■■■□ 3.04
LETMD1-224ENST00000550446 GRIN2BQ13224 1484 aa33.98■■■■□ 3.03
LETMD1-224ENST00000550446 WDR97A6NE52 1622 aa33.97■■■■□ 3.03
LETMD1-224ENST00000550446 MAGI1Q96QZ7 1491 aaPredicted RBP33.94■■■■□ 3.02
LETMD1-224ENST00000550446 ARAP1Q96P48 1450 aa33.92■■■■□ 3.02
LETMD1-224ENST00000550446 GAPVD1Q14C86 1478 aa33.88■■■■□ 3.01
LETMD1-224ENST00000550446 SYNJ2O15056 1496 aa33.85■■■■□ 3.01
LETMD1-224ENST00000550446 TRHP20396 242 aaPredicted RBP33.85■■■■□ 3.01
LETMD1-224ENST00000550446 SYNJ1O43426 1573 aa33.81■■■■□ 3
LETMD1-224ENST00000550446 CLASP1Q7Z460 1538 aa33.79■■■■□ 3
LETMD1-224ENST00000550446 ABCA10Q8WWZ4 1543 aa33.79■■■■□ 3
LETMD1-224ENST00000550446 WRNQ14191 1432 aaPredicted RBP eCLIP33.75■■■□□ 2.99
LETMD1-224ENST00000550446 PBRM1Q86U86 1689 aa33.69■■■□□ 2.98
LETMD1-224ENST00000550446 ABCA5Q8WWZ7 1642 aa33.66■■■□□ 2.98
LETMD1-224ENST00000550446 TOP2BQ02880 1626 aa33.57■■■□□ 2.97
LETMD1-224ENST00000550446 GRIN2AQ12879 1464 aa33.52■■■□□ 2.96
LETMD1-224ENST00000550446 BIVM-ERCC5R4GMW8 1640 aa33.52■■■□□ 2.96
LETMD1-224ENST00000550446 FHAD1B1AJZ9 1412 aa33.45■■■□□ 2.95
LETMD1-224ENST00000550446 ADAMTS12P58397 1594 aa33.43■■■□□ 2.94
LETMD1-224ENST00000550446 NUP160Q12769 1436 aa33.4■■■□□ 2.94
LETMD1-224ENST00000550446 CEP170Q5SW79 1584 aa33.36■■■□□ 2.93
LETMD1-224ENST00000550446 ERICH3Q5RHP9 1530 aa33.35■■■□□ 2.93
LETMD1-224ENST00000550446 ERCC6L2Q5T890 1561 aa33.34■■■□□ 2.93
LETMD1-224ENST00000550446 JPH4Q96JJ6 628 aa33.23■■■□□ 2.91
LETMD1-224ENST00000550446 PRG4Q92954 1404 aaPredicted RBP33.17■■■□□ 2.9
LETMD1-224ENST00000550446 SHROOM2Q13796 1616 aa33.15■■■□□ 2.9
LETMD1-224ENST00000550446 IGF1RP08069 1367 aa33.09■■■□□ 2.89
LETMD1-224ENST00000550446 KIF27Q86VH2 1401 aa33.04■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms