RNA–Protein interactions for RNA: ENST00000550446.5

LETMD1-224, Transcript of LETM1 domain containing 1, humanhuman

TSL 3

Gene LETMD1, Length 562 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-224ENST00000550446 NISCHQ9Y2I1 1504 aa47.19■■■■■ 5.14
LETMD1-224ENST00000550446 ABCC9O60706 1549 aa42.41■■■■■ 4.38
LETMD1-224ENST00000550446 CCDC180Q9P1Z9 1646 aa42.16■■■■■ 4.34
LETMD1-224ENST00000550446 RB1CC1Q8TDY2 1594 aa40.25■■■■■ 4.03
LETMD1-224ENST00000550446 DCAF8L2P0C7V8 631 aa40.16■■■■■ 4.02
LETMD1-224ENST00000550446 NACADO15069 1562 aa39.97■■■■□ 3.99
LETMD1-224ENST00000550446 DNAJC5BQ9UF47 199 aa39.88■■■■□ 3.97
LETMD1-224ENST00000550446 PABPN1Q86U42 306 aaKnown RBP eCLIP39.63■■■■□ 3.93
LETMD1-224ENST00000550446 MYO15BQ96JP2 1530 aa39.39■■■■□ 3.9
LETMD1-224ENST00000550446 UNC13AQ9UPW8 1703 aa39.2■■■■□ 3.87
LETMD1-224ENST00000550446 ZCCHC6Q5VYS8 1495 aaKnown RBP39.06■■■■□ 3.84
LETMD1-224ENST00000550446 BICRAQ9NZM4 1560 aa39.06■■■■□ 3.84
LETMD1-224ENST00000550446 DCAF1Q9Y4B6 1507 aa38.89■■■■□ 3.82
LETMD1-224ENST00000550446 SCRIBQ14160 1630 aa38.57■■■■□ 3.77
LETMD1-224ENST00000550446 SHROOM4Q9ULL8 1493 aa38.47■■■■□ 3.75
LETMD1-224ENST00000550446 CC2D2AQ9P2K1 1620 aa38.2■■■■□ 3.71
LETMD1-224ENST00000550446 CECR2Q9BXF3 1484 aa38.18■■■■□ 3.7
LETMD1-224ENST00000550446 EIF4G1Q04637 1599 aaKnown RBP38.12■■■■□ 3.69
LETMD1-224ENST00000550446 NCAPD3P42695 1498 aa36.97■■■■□ 3.51
LETMD1-224ENST00000550446 ATAD2BQ9ULI0 1458 aa36.87■■■■□ 3.49
LETMD1-224ENST00000550446 SMARCA4P51532 1647 aa36.74■■■■□ 3.47
LETMD1-224ENST00000550446 SMARCA2P51531 1590 aa36.7■■■■□ 3.47
LETMD1-224ENST00000550446 ERCC6Q03468 1493 aa36.61■■■■□ 3.45
LETMD1-224ENST00000550446 BAZ1AQ9NRL2 1556 aaPredicted RBP36.6■■■■□ 3.45
LETMD1-224ENST00000550446 HMGXB3Q12766 1538 aa36.59■■■■□ 3.45
LETMD1-224ENST00000550446 DNAJC5Q9H3Z4 198 aa36.58■■■■□ 3.45
LETMD1-224ENST00000550446 BAZ1BQ9UIG0 1483 aaKnown RBP36.51■■■■□ 3.44
LETMD1-224ENST00000550446 CUX2O14529 1486 aa36.44■■■■□ 3.42
LETMD1-224ENST00000550446 NESP48681 1621 aa36.42■■■■□ 3.42
LETMD1-224ENST00000550446 MROH2BQ7Z745 1585 aa36.39■■■■□ 3.42
LETMD1-224ENST00000550446 PEG3Q9GZU2 1588 aa36.35■■■■□ 3.41
LETMD1-224ENST00000550446 LAMC3Q9Y6N6 1575 aa36.06■■■■□ 3.36
LETMD1-224ENST00000550446 PDS5BQ9NTI5 1447 aa35.97■■■■□ 3.35
LETMD1-224ENST00000550446 CADPSQ9ULU8 1353 aa35.91■■■■□ 3.34
LETMD1-224ENST00000550446 WIZO95785 1651 aa35.91■■■■□ 3.34
LETMD1-224ENST00000550446 THOC2Q8NI27 1593 aaKnown RBP35.88■■■■□ 3.33
LETMD1-224ENST00000550446 KIF21AQ7Z4S6 1674 aa35.79■■■■□ 3.32
LETMD1-224ENST00000550446 RSF1Q96T23 1441 aaPredicted RBP35.69■■■■□ 3.3
LETMD1-224ENST00000550446 MRC2Q9UBG0 1479 aa35.6■■■■□ 3.29
LETMD1-224ENST00000550446 CEP164Q9UPV0 1460 aa35.47■■■■□ 3.27
LETMD1-224ENST00000550446 FANCD2Q9BXW9 1451 aa35.46■■■■□ 3.27
LETMD1-224ENST00000550446 WDR62O43379 1518 aa35.44■■■■□ 3.26
LETMD1-224ENST00000550446 CFTRP13569 1480 aa35.44■■■■□ 3.26
LETMD1-224ENST00000550446 TOP2AP11388 1531 aaKnown RBP35.43■■■■□ 3.26
LETMD1-224ENST00000550446 URB2Q14146 1524 aaKnown RBP35.15■■■■□ 3.22
LETMD1-224ENST00000550446 CCDC88BA6NC98 1476 aa35.15■■■■□ 3.22
LETMD1-224ENST00000550446 TRIM41Q8WV44 630 aa35.07■■■■□ 3.2
LETMD1-224ENST00000550446 OSCARQ8IYS5 282 aa34.99■■■■□ 3.19
LETMD1-224ENST00000550446 PRDM2Q13029 1718 aa34.84■■■■□ 3.17
LETMD1-224ENST00000550446 IFT140Q96RY7 1462 aa34.77■■■■□ 3.16
LETMD1-224ENST00000550446 TOPBP1Q92547 1522 aa34.76■■■■□ 3.16
LETMD1-224ENST00000550446 ZNF608Q9ULD9 1512 aaPredicted RBP34.75■■■■□ 3.15
LETMD1-224ENST00000550446 ABCC8Q09428 1581 aa34.69■■■■□ 3.14
LETMD1-224ENST00000550446 DNMBPQ6XZF7 1577 aa34.58■■■■□ 3.13
LETMD1-224ENST00000550446 AQRO60306 1485 aaKnown RBP eCLIP34.49■■■■□ 3.118e-7■□□□□ 10.8
LETMD1-224ENST00000550446 EIF4G3O43432 1585 aaKnown RBP34.43■■■■□ 3.1
LETMD1-224ENST00000550446 POLA1P09884 1462 aaPredicted RBP34.41■■■■□ 3.1
LETMD1-224ENST00000550446 FBLN2P98095 1184 aa34.39■■■■□ 3.1
LETMD1-224ENST00000550446 TARBP1Q13395 1621 aaKnown RBP34.38■■■■□ 3.09
LETMD1-224ENST00000550446 RAD54L2Q9Y4B4 1467 aa34.36■■■■□ 3.09
LETMD1-224ENST00000550446 SOGA1O94964 1423 aa34.36■■■■□ 3.09
LETMD1-224ENST00000550446 SUPT5HO00267 1087 aaKnown RBP34.33■■■■□ 3.09
LETMD1-224ENST00000550446 RIMBP3CA6NJZ7 1639 aa34.32■■■■□ 3.08
LETMD1-224ENST00000550446 RIMBP3BA6NNM3 1639 aa34.32■■■■□ 3.08
LETMD1-224ENST00000550446 RIMBP3Q9UFD9 1639 aa34.32■■■■□ 3.08
LETMD1-224ENST00000550446 TDRD9Q8NDG6 1382 aaKnown RBP34.32■■■■□ 3.08
LETMD1-224ENST00000550446 ARHGEF11O15085 1522 aa34.25■■■■□ 3.07
LETMD1-224ENST00000550446 FGD5Q6ZNL6 1462 aa34.21■■■■□ 3.07
LETMD1-224ENST00000550446 CYB5RLQ6IPT4 315 aa34.21■■■■□ 3.07
LETMD1-224ENST00000550446 CUX1P39880 1505 aa34.17■■■■□ 3.06
LETMD1-224ENST00000550446 CHD1O14646 1710 aa34.14■■■■□ 3.06
LETMD1-224ENST00000550446 CHMP7Q8WUX9 453 aaPredicted RBP34.1■■■■□ 3.05
LETMD1-224ENST00000550446 SNAPC4Q5SXM2 1469 aa34.07■■■■□ 3.04
LETMD1-224ENST00000550446 GRIN2BQ13224 1484 aa33.98■■■■□ 3.03
LETMD1-224ENST00000550446 WDR97A6NE52 1622 aa33.97■■■■□ 3.03
LETMD1-224ENST00000550446 MAGI1Q96QZ7 1491 aaPredicted RBP33.94■■■■□ 3.02
LETMD1-224ENST00000550446 ARAP1Q96P48 1450 aa33.92■■■■□ 3.02
LETMD1-224ENST00000550446 GAPVD1Q14C86 1478 aa33.88■■■■□ 3.01
LETMD1-224ENST00000550446 SYNJ2O15056 1496 aa33.85■■■■□ 3.01
LETMD1-224ENST00000550446 TRHP20396 242 aaPredicted RBP33.85■■■■□ 3.01
LETMD1-224ENST00000550446 SYNJ1O43426 1573 aa33.81■■■■□ 3
LETMD1-224ENST00000550446 CLASP1Q7Z460 1538 aa33.79■■■■□ 3
LETMD1-224ENST00000550446 ABCA10Q8WWZ4 1543 aa33.79■■■■□ 3
LETMD1-224ENST00000550446 WRNQ14191 1432 aaPredicted RBP eCLIP33.75■■■□□ 2.99
LETMD1-224ENST00000550446 PBRM1Q86U86 1689 aa33.69■■■□□ 2.98
LETMD1-224ENST00000550446 ABCA5Q8WWZ7 1642 aa33.66■■■□□ 2.98
LETMD1-224ENST00000550446 TOP2BQ02880 1626 aa33.57■■■□□ 2.97
LETMD1-224ENST00000550446 GRIN2AQ12879 1464 aa33.52■■■□□ 2.96
LETMD1-224ENST00000550446 BIVM-ERCC5R4GMW8 1640 aa33.52■■■□□ 2.96
LETMD1-224ENST00000550446 FHAD1B1AJZ9 1412 aa33.45■■■□□ 2.95
LETMD1-224ENST00000550446 ADAMTS12P58397 1594 aa33.43■■■□□ 2.94
LETMD1-224ENST00000550446 NUP160Q12769 1436 aa33.4■■■□□ 2.94
LETMD1-224ENST00000550446 CEP170Q5SW79 1584 aa33.36■■■□□ 2.93
LETMD1-224ENST00000550446 ERICH3Q5RHP9 1530 aa33.35■■■□□ 2.93
LETMD1-224ENST00000550446 ERCC6L2Q5T890 1561 aa33.34■■■□□ 2.93
LETMD1-224ENST00000550446 JPH4Q96JJ6 628 aa33.23■■■□□ 2.91
LETMD1-224ENST00000550446 PRG4Q92954 1404 aaPredicted RBP33.17■■■□□ 2.9
LETMD1-224ENST00000550446 SHROOM2Q13796 1616 aa33.15■■■□□ 2.9
LETMD1-224ENST00000550446 IGF1RP08069 1367 aa33.09■■■□□ 2.89
LETMD1-224ENST00000550446 KIF27Q86VH2 1401 aa33.04■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms