RNA–Protein interactions for RNA: ENST00000550436.4

SVOP-203, Transcript of SV2 related protein, humanhuman

TSL 4

Gene SVOP, Length 695 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVOP-203ENST00000550436 NISCHQ9Y2I1 1504 aa38.2■■■■□ 3.71
SVOP-203ENST00000550436 ABCC9O60706 1549 aa34.79■■■■□ 3.16
SVOP-203ENST00000550436 CCDC180Q9P1Z9 1646 aa34.33■■■■□ 3.09
SVOP-203ENST00000550436 DNAJC5BQ9UF47 199 aa33.01■■■□□ 2.87
SVOP-203ENST00000550436 RB1CC1Q8TDY2 1594 aa32.84■■■□□ 2.85
SVOP-203ENST00000550436 NACADO15069 1562 aa32.53■■■□□ 2.8
SVOP-203ENST00000550436 DCAF8L2P0C7V8 631 aa32.5■■■□□ 2.79
SVOP-203ENST00000550436 PABPN1Q86U42 306 aaKnown RBP eCLIP32.4■■■□□ 2.78
SVOP-203ENST00000550436 UNC13AQ9UPW8 1703 aa32.23■■■□□ 2.75
SVOP-203ENST00000550436 BICRAQ9NZM4 1560 aa32.02■■■□□ 2.72
SVOP-203ENST00000550436 MYO15BQ96JP2 1530 aa31.92■■■□□ 2.7
SVOP-203ENST00000550436 ZCCHC6Q5VYS8 1495 aaKnown RBP31.58■■■□□ 2.65
SVOP-203ENST00000550436 DCAF1Q9Y4B6 1507 aa31.44■■■□□ 2.62
SVOP-203ENST00000550436 SCRIBQ14160 1630 aa31.4■■■□□ 2.62
SVOP-203ENST00000550436 CC2D2AQ9P2K1 1620 aa31.37■■■□□ 2.61
SVOP-203ENST00000550436 CECR2Q9BXF3 1484 aa31.31■■■□□ 2.6
SVOP-203ENST00000550436 SHROOM4Q9ULL8 1493 aa31.31■■■□□ 2.6
SVOP-203ENST00000550436 EIF4G1Q04637 1599 aaKnown RBP31.2■■■□□ 2.58
SVOP-203ENST00000550436 DNAJC5Q9H3Z4 198 aa30.39■■■□□ 2.46
SVOP-203ENST00000550436 NCAPD3P42695 1498 aa30.07■■■□□ 2.4
SVOP-203ENST00000550436 ATAD2BQ9ULI0 1458 aa29.98■■■□□ 2.39
SVOP-203ENST00000550436 ERCC6Q03468 1493 aa29.97■■■□□ 2.39
SVOP-203ENST00000550436 CUX2O14529 1486 aa29.95■■■□□ 2.39
SVOP-203ENST00000550436 SMARCA4P51532 1647 aa29.87■■■□□ 2.37
SVOP-203ENST00000550436 NESP48681 1621 aa29.84■■■□□ 2.37
SVOP-203ENST00000550436 SMARCA2P51531 1590 aa29.8■■■□□ 2.36
SVOP-203ENST00000550436 HMGXB3Q12766 1538 aa29.78■■■□□ 2.36
SVOP-203ENST00000550436 BAZ1BQ9UIG0 1483 aaKnown RBP29.65■■■□□ 2.34
SVOP-203ENST00000550436 BAZ1AQ9NRL2 1556 aaPredicted RBP29.61■■■□□ 2.33
SVOP-203ENST00000550436 PEG3Q9GZU2 1588 aa29.52■■■□□ 2.32
SVOP-203ENST00000550436 MROH2BQ7Z745 1585 aa29.51■■■□□ 2.31
SVOP-203ENST00000550436 THOC2Q8NI27 1593 aaKnown RBP29.5■■■□□ 2.31
SVOP-203ENST00000550436 LAMC3Q9Y6N6 1575 aa29.41■■■□□ 2.3
SVOP-203ENST00000550436 KIF21AQ7Z4S6 1674 aa29.4■■■□□ 2.3
SVOP-203ENST00000550436 PDS5BQ9NTI5 1447 aa29.25■■■□□ 2.27
SVOP-203ENST00000550436 CADPSQ9ULU8 1353 aa29.16■■■□□ 2.26
SVOP-203ENST00000550436 WIZO95785 1651 aa29.15■■■□□ 2.26
SVOP-203ENST00000550436 MRC2Q9UBG0 1479 aa29.06■■■□□ 2.24
SVOP-203ENST00000550436 TRIM41Q8WV44 630 aa29.01■■■□□ 2.23
SVOP-203ENST00000550436 WDR62O43379 1518 aa28.99■■■□□ 2.23
SVOP-203ENST00000550436 CEP164Q9UPV0 1460 aa28.87■■■□□ 2.21
SVOP-203ENST00000550436 FANCD2Q9BXW9 1451 aa28.85■■■□□ 2.21
SVOP-203ENST00000550436 CFTRP13569 1480 aa28.76■■■□□ 2.19
SVOP-203ENST00000550436 RSF1Q96T23 1441 aaPredicted RBP28.76■■■□□ 2.19
SVOP-203ENST00000550436 URB2Q14146 1524 aaKnown RBP28.68■■■□□ 2.18
SVOP-203ENST00000550436 TOP2AP11388 1531 aaKnown RBP28.66■■■□□ 2.18
SVOP-203ENST00000550436 OSCARQ8IYS5 282 aa28.6■■■□□ 2.17
SVOP-203ENST00000550436 PRDM2Q13029 1718 aa28.43■■■□□ 2.14
SVOP-203ENST00000550436 CCDC88BA6NC98 1476 aa28.4■■■□□ 2.14
SVOP-203ENST00000550436 ZNF608Q9ULD9 1512 aaPredicted RBP28.4■■■□□ 2.14
SVOP-203ENST00000550436 RIMBP3CA6NJZ7 1639 aa28.31■■■□□ 2.12
SVOP-203ENST00000550436 RIMBP3BA6NNM3 1639 aa28.31■■■□□ 2.12
SVOP-203ENST00000550436 RIMBP3Q9UFD9 1639 aa28.31■■■□□ 2.12
SVOP-203ENST00000550436 IFT140Q96RY7 1462 aa28.3■■■□□ 2.12
SVOP-203ENST00000550436 TOPBP1Q92547 1522 aa28.28■■■□□ 2.12
SVOP-203ENST00000550436 ARHGEF11O15085 1522 aa28.17■■■□□ 2.1
SVOP-203ENST00000550436 EIF4G3O43432 1585 aaKnown RBP28.16■■■□□ 2.1
SVOP-203ENST00000550436 DNMBPQ6XZF7 1577 aa28.11■■■□□ 2.09
SVOP-203ENST00000550436 AQRO60306 1485 aaKnown RBP eCLIP28.1■■■□□ 2.09
SVOP-203ENST00000550436 ABCC8Q09428 1581 aa28.07■■■□□ 2.08
SVOP-203ENST00000550436 TARBP1Q13395 1621 aaKnown RBP28.06■■■□□ 2.08
SVOP-203ENST00000550436 CHD1O14646 1710 aa28.05■■■□□ 2.08
SVOP-203ENST00000550436 CYB5RLQ6IPT4 315 aa28.04■■■□□ 2.08
SVOP-203ENST00000550436 POLA1P09884 1462 aaPredicted RBP27.97■■■□□ 2.07
SVOP-203ENST00000550436 FBLN2P98095 1184 aa27.97■■■□□ 2.07
SVOP-203ENST00000550436 RAD54L2Q9Y4B4 1467 aa27.95■■■□□ 2.07
SVOP-203ENST00000550436 ARAP1Q96P48 1450 aa27.9■■■□□ 2.06
SVOP-203ENST00000550436 TDRD9Q8NDG6 1382 aaKnown RBP27.88■■■□□ 2.05
SVOP-203ENST00000550436 SOGA1O94964 1423 aa27.84■■■□□ 2.05
SVOP-203ENST00000550436 TRHP20396 242 aaPredicted RBP27.8■■■□□ 2.04
SVOP-203ENST00000550436 FGD5Q6ZNL6 1462 aa27.77■■■□□ 2.04
SVOP-203ENST00000550436 SNAPC4Q5SXM2 1469 aa27.76■■■□□ 2.03
SVOP-203ENST00000550436 CUX1P39880 1505 aa27.72■■■□□ 2.03
SVOP-203ENST00000550436 CLASP1Q7Z460 1538 aa27.67■■■□□ 2.02
SVOP-203ENST00000550436 CHMP7Q8WUX9 453 aaPredicted RBP27.66■■■□□ 2.02
SVOP-203ENST00000550436 GRIN2BQ13224 1484 aa27.59■■■□□ 2.01
SVOP-203ENST00000550436 MAGI1Q96QZ7 1491 aaPredicted RBP27.59■■■□□ 2.01
SVOP-203ENST00000550436 WDR97A6NE52 1622 aa27.59■■■□□ 2.01
SVOP-203ENST00000550436 SYNJ1O43426 1573 aa27.57■■■□□ 2
SVOP-203ENST00000550436 SYNJ2O15056 1496 aa27.53■■■□□ 2
SVOP-203ENST00000550436 PBRM1Q86U86 1689 aa27.5■■□□□ 1.99
SVOP-203ENST00000550436 GAPVD1Q14C86 1478 aa27.48■■□□□ 1.99
SVOP-203ENST00000550436 ABCA5Q8WWZ7 1642 aa27.39■■□□□ 1.98
SVOP-203ENST00000550436 ABCA10Q8WWZ4 1543 aa27.39■■□□□ 1.98
SVOP-203ENST00000550436 SUPT5HO00267 1087 aaKnown RBP27.35■■□□□ 1.97
SVOP-203ENST00000550436 ERCC6L2Q5T890 1561 aa27.35■■□□□ 1.97
SVOP-203ENST00000550436 GRIN2AQ12879 1464 aa27.25■■□□□ 1.95
SVOP-203ENST00000550436 CEP170Q5SW79 1584 aa27.22■■□□□ 1.95
SVOP-203ENST00000550436 ADAMTS12P58397 1594 aa27.21■■□□□ 1.95
SVOP-203ENST00000550436 WRNQ14191 1432 aaPredicted RBP eCLIP27.2■■□□□ 1.94
SVOP-203ENST00000550436 NUP160Q12769 1436 aa27.17■■□□□ 1.94
SVOP-203ENST00000550436 AEBP2Q6ZN18 517 aaPredicted RBP27.15■■□□□ 1.94
SVOP-203ENST00000550436 BIVM-ERCC5R4GMW8 1640 aa27.14■■□□□ 1.94
SVOP-203ENST00000550436 TOP2BQ02880 1626 aa27.12■■□□□ 1.93
SVOP-203ENST00000550436 FHAD1B1AJZ9 1412 aa27.09■■□□□ 1.93
SVOP-203ENST00000550436 SHROOM2Q13796 1616 aa27.08■■□□□ 1.93
SVOP-203ENST00000550436 ERICH3Q5RHP9 1530 aa27■■□□□ 1.91
SVOP-203ENST00000550436 PRG4Q92954 1404 aaPredicted RBP26.97■■□□□ 1.91
SVOP-203ENST00000550436 KIF13AQ9H1H9 1805 aa26.95■■□□□ 1.91
SVOP-203ENST00000550436 JPH4Q96JJ6 628 aa26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms