RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 NISCHQ9Y2I1 1504 aa29.49■■■□□ 2.31
SMARCD1-208ENST00000550280 ABCC9O60706 1549 aa26.62■■□□□ 1.85
SMARCD1-208ENST00000550280 CCDC180Q9P1Z9 1646 aa26.43■■□□□ 1.82
SMARCD1-208ENST00000550280 RB1CC1Q8TDY2 1594 aa25.22■■□□□ 1.63
SMARCD1-208ENST00000550280 DNAJC5BQ9UF47 199 aa25.18■■□□□ 1.62
SMARCD1-208ENST00000550280 NACADO15069 1562 aa25.03■■□□□ 1.6
SMARCD1-208ENST00000550280 DCAF8L2P0C7V8 631 aa24.83■■□□□ 1.57
SMARCD1-208ENST00000550280 PABPN1Q86U42 306 aaKnown RBP eCLIP24.78■■□□□ 1.56
SMARCD1-208ENST00000550280 UNC13AQ9UPW8 1703 aa24.69■■□□□ 1.54
SMARCD1-208ENST00000550280 MYO15BQ96JP2 1530 aa24.67■■□□□ 1.54
SMARCD1-208ENST00000550280 BICRAQ9NZM4 1560 aa24.62■■□□□ 1.53
SMARCD1-208ENST00000550280 ZCCHC6Q5VYS8 1495 aaKnown RBP24.43■■□□□ 1.5
SMARCD1-208ENST00000550280 DCAF1Q9Y4B6 1507 aa24.33■■□□□ 1.49
SMARCD1-208ENST00000550280 SHROOM4Q9ULL8 1493 aa24.15■■□□□ 1.46
SMARCD1-208ENST00000550280 SCRIBQ14160 1630 aa24.13■■□□□ 1.45
SMARCD1-208ENST00000550280 CC2D2AQ9P2K1 1620 aa24.02■■□□□ 1.44
SMARCD1-208ENST00000550280 CECR2Q9BXF3 1484 aa23.97■■□□□ 1.43
SMARCD1-208ENST00000550280 EIF4G1Q04637 1599 aaKnown RBP23.95■■□□□ 1.43
SMARCD1-208ENST00000550280 NCAPD3P42695 1498 aa23.16■■□□□ 1.3
SMARCD1-208ENST00000550280 DNAJC5Q9H3Z4 198 aa23.1■■□□□ 1.29
SMARCD1-208ENST00000550280 ATAD2BQ9ULI0 1458 aa23.09■■□□□ 1.29
SMARCD1-208ENST00000550280 SMARCA4P51532 1647 aa23■■□□□ 1.27
SMARCD1-208ENST00000550280 HMGXB3Q12766 1538 aa22.96■■□□□ 1.27
SMARCD1-208ENST00000550280 SMARCA2P51531 1590 aa22.94■■□□□ 1.26
SMARCD1-208ENST00000550280 CUX2O14529 1486 aa22.94■■□□□ 1.26
SMARCD1-208ENST00000550280 ERCC6Q03468 1493 aa22.91■■□□□ 1.26
SMARCD1-208ENST00000550280 NESP48681 1621 aa22.88■■□□□ 1.25
SMARCD1-208ENST00000550280 BAZ1AQ9NRL2 1556 aaPredicted RBP22.84■■□□□ 1.25
SMARCD1-208ENST00000550280 PEG3Q9GZU2 1588 aa22.8■■□□□ 1.24
SMARCD1-208ENST00000550280 BAZ1BQ9UIG0 1483 aaKnown RBP22.79■■□□□ 1.24
SMARCD1-208ENST00000550280 MROH2BQ7Z745 1585 aa22.76■■□□□ 1.23
SMARCD1-208ENST00000550280 THOC2Q8NI27 1593 aaKnown RBP22.64■■□□□ 1.22
SMARCD1-208ENST00000550280 LAMC3Q9Y6N6 1575 aa22.6■■□□□ 1.21
SMARCD1-208ENST00000550280 KIF21AQ7Z4S6 1674 aa22.51■■□□□ 1.19
SMARCD1-208ENST00000550280 PDS5BQ9NTI5 1447 aa22.46■■□□□ 1.19
SMARCD1-208ENST00000550280 WIZO95785 1651 aa22.44■■□□□ 1.18
SMARCD1-208ENST00000550280 CADPSQ9ULU8 1353 aa22.43■■□□□ 1.18
SMARCD1-208ENST00000550280 MRC2Q9UBG0 1479 aa22.31■■□□□ 1.16
SMARCD1-208ENST00000550280 WDR62O43379 1518 aa22.29■■□□□ 1.16
SMARCD1-208ENST00000550280 RSF1Q96T23 1441 aaPredicted RBP22.23■■□□□ 1.15
SMARCD1-208ENST00000550280 CFTRP13569 1480 aa22.18■■□□□ 1.14
SMARCD1-208ENST00000550280 FANCD2Q9BXW9 1451 aa22.18■■□□□ 1.14
SMARCD1-208ENST00000550280 CEP164Q9UPV0 1460 aa22.18■■□□□ 1.14
SMARCD1-208ENST00000550280 TOP2AP11388 1531 aaKnown RBP22.13■■□□□ 1.13
SMARCD1-208ENST00000550280 URB2Q14146 1524 aaKnown RBP22.06■■□□□ 1.12
SMARCD1-208ENST00000550280 TRIM41Q8WV44 630 aa21.99■■□□□ 1.11
SMARCD1-208ENST00000550280 CCDC88BA6NC98 1476 aa21.91■■□□□ 1.1
SMARCD1-208ENST00000550280 OSCARQ8IYS5 282 aa21.84■■□□□ 1.09
SMARCD1-208ENST00000550280 PRDM2Q13029 1718 aa21.83■■□□□ 1.09
SMARCD1-208ENST00000550280 ZNF608Q9ULD9 1512 aaPredicted RBP21.81■■□□□ 1.08
SMARCD1-208ENST00000550280 TOPBP1Q92547 1522 aa21.76■■□□□ 1.07
SMARCD1-208ENST00000550280 IFT140Q96RY7 1462 aa21.75■■□□□ 1.07
SMARCD1-208ENST00000550280 DNMBPQ6XZF7 1577 aa21.65■■□□□ 1.06
SMARCD1-208ENST00000550280 RIMBP3CA6NJZ7 1639 aa21.63■■□□□ 1.05
SMARCD1-208ENST00000550280 RIMBP3BA6NNM3 1639 aa21.63■■□□□ 1.05
SMARCD1-208ENST00000550280 RIMBP3Q9UFD9 1639 aa21.63■■□□□ 1.05
SMARCD1-208ENST00000550280 EIF4G3O43432 1585 aaKnown RBP21.63■■□□□ 1.05
SMARCD1-208ENST00000550280 ABCC8Q09428 1581 aa21.61■■□□□ 1.05
SMARCD1-208ENST00000550280 TARBP1Q13395 1621 aaKnown RBP21.59■■□□□ 1.05
SMARCD1-208ENST00000550280 ARHGEF11O15085 1522 aa21.57■■□□□ 1.04
SMARCD1-208ENST00000550280 AQRO60306 1485 aaKnown RBP eCLIP21.57■■□□□ 1.044e-7■■■■■ 32.7
SMARCD1-208ENST00000550280 POLA1P09884 1462 aaPredicted RBP21.55■■□□□ 1.04
SMARCD1-208ENST00000550280 RAD54L2Q9Y4B4 1467 aa21.49■■□□□ 1.03
SMARCD1-208ENST00000550280 CHD1O14646 1710 aa21.46■■□□□ 1.03
SMARCD1-208ENST00000550280 TDRD9Q8NDG6 1382 aaKnown RBP21.41■■□□□ 1.02
SMARCD1-208ENST00000550280 SOGA1O94964 1423 aa21.4■■□□□ 1.02
SMARCD1-208ENST00000550280 ARAP1Q96P48 1450 aa21.39■■□□□ 1.01
SMARCD1-208ENST00000550280 CUX1P39880 1505 aa21.38■■□□□ 1.01
SMARCD1-208ENST00000550280 FGD5Q6ZNL6 1462 aa21.38■■□□□ 1.01
SMARCD1-208ENST00000550280 CYB5RLQ6IPT4 315 aa21.37■■□□□ 1.01
SMARCD1-208ENST00000550280 FBLN2P98095 1184 aa21.35■■□□□ 1.01
SMARCD1-208ENST00000550280 SNAPC4Q5SXM2 1469 aa21.33■■□□□ 1.01
SMARCD1-208ENST00000550280 CLASP1Q7Z460 1538 aa21.28■■□□□ 1
SMARCD1-208ENST00000550280 WDR97A6NE52 1622 aa21.27■■□□□ 1
SMARCD1-208ENST00000550280 MAGI1Q96QZ7 1491 aaPredicted RBP21.23■□□□□ 0.99
SMARCD1-208ENST00000550280 GRIN2BQ13224 1484 aa21.22■□□□□ 0.99
SMARCD1-208ENST00000550280 CHMP7Q8WUX9 453 aaPredicted RBP21.18■□□□□ 0.98
SMARCD1-208ENST00000550280 SYNJ2O15056 1496 aa21.17■□□□□ 0.98
SMARCD1-208ENST00000550280 SYNJ1O43426 1573 aa21.15■□□□□ 0.98
SMARCD1-208ENST00000550280 GAPVD1Q14C86 1478 aa21.13■□□□□ 0.97
SMARCD1-208ENST00000550280 ABCA10Q8WWZ4 1543 aa21.13■□□□□ 0.97
SMARCD1-208ENST00000550280 ABCA5Q8WWZ7 1642 aa21.11■□□□□ 0.97
SMARCD1-208ENST00000550280 TRHP20396 242 aaPredicted RBP21.11■□□□□ 0.97
SMARCD1-208ENST00000550280 PBRM1Q86U86 1689 aa21.11■□□□□ 0.97
SMARCD1-208ENST00000550280 SUPT5HO00267 1087 aaKnown RBP21.08■□□□□ 0.97
SMARCD1-208ENST00000550280 ERCC6L2Q5T890 1561 aa20.98■□□□□ 0.95
SMARCD1-208ENST00000550280 WRNQ14191 1432 aaPredicted RBP eCLIP20.97■□□□□ 0.95
SMARCD1-208ENST00000550280 GRIN2AQ12879 1464 aa20.97■□□□□ 0.95
SMARCD1-208ENST00000550280 ADAMTS12P58397 1594 aa20.96■□□□□ 0.95
SMARCD1-208ENST00000550280 TOP2BQ02880 1626 aa20.95■□□□□ 0.94
SMARCD1-208ENST00000550280 BIVM-ERCC5R4GMW8 1640 aa20.95■□□□□ 0.94
SMARCD1-208ENST00000550280 CEP170Q5SW79 1584 aa20.94■□□□□ 0.94
SMARCD1-208ENST00000550280 NUP160Q12769 1436 aa20.94■□□□□ 0.94
SMARCD1-208ENST00000550280 FHAD1B1AJZ9 1412 aa20.87■□□□□ 0.93
SMARCD1-208ENST00000550280 SHROOM2Q13796 1616 aa20.84■□□□□ 0.93
SMARCD1-208ENST00000550280 ERICH3Q5RHP9 1530 aa20.83■□□□□ 0.92
SMARCD1-208ENST00000550280 PRG4Q92954 1404 aaPredicted RBP20.7■□□□□ 0.9
SMARCD1-208ENST00000550280 JPH4Q96JJ6 628 aa20.67■□□□□ 0.9
SMARCD1-208ENST00000550280 RUSC2Q8N2Y8 1516 aa20.67■□□□□ 0.9
SMARCD1-208ENST00000550280 KIF13AQ9H1H9 1805 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms