RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 NISCHQ9Y2I1 1504 aa26.78■■□□□ 1.88
VTI1BP3-201ENST00000550220 CCDC180Q9P1Z9 1646 aa23.89■■□□□ 1.42
VTI1BP3-201ENST00000550220 ABCC9O60706 1549 aa23.78■■□□□ 1.4
VTI1BP3-201ENST00000550220 RB1CC1Q8TDY2 1594 aa22.74■■□□□ 1.23
VTI1BP3-201ENST00000550220 NACADO15069 1562 aa22.65■■□□□ 1.22
VTI1BP3-201ENST00000550220 DCAF8L2P0C7V8 631 aa22.64■■□□□ 1.21
VTI1BP3-201ENST00000550220 MYO15BQ96JP2 1530 aa22.45■■□□□ 1.18
VTI1BP3-201ENST00000550220 PABPN1Q86U42 306 aaKnown RBP eCLIP22.22■■□□□ 1.15
VTI1BP3-201ENST00000550220 ZCCHC6Q5VYS8 1495 aaKnown RBP22.21■■□□□ 1.15
VTI1BP3-201ENST00000550220 DNAJC5BQ9UF47 199 aa22.19■■□□□ 1.14
VTI1BP3-201ENST00000550220 DCAF1Q9Y4B6 1507 aa22.18■■□□□ 1.14
VTI1BP3-201ENST00000550220 UNC13AQ9UPW8 1703 aa22■■□□□ 1.11
VTI1BP3-201ENST00000550220 BICRAQ9NZM4 1560 aa21.97■■□□□ 1.11
VTI1BP3-201ENST00000550220 SHROOM4Q9ULL8 1493 aa21.87■■□□□ 1.09
VTI1BP3-201ENST00000550220 SCRIBQ14160 1630 aa21.74■■□□□ 1.07
VTI1BP3-201ENST00000550220 EIF4G1Q04637 1599 aaKnown RBP21.48■■□□□ 1.03
VTI1BP3-201ENST00000550220 CECR2Q9BXF3 1484 aa21.45■■□□□ 1.03
VTI1BP3-201ENST00000550220 CC2D2AQ9P2K1 1620 aa21.45■■□□□ 1.02
VTI1BP3-201ENST00000550220 NCAPD3P42695 1498 aa20.95■□□□□ 0.94
VTI1BP3-201ENST00000550220 ATAD2BQ9ULI0 1458 aa20.86■□□□□ 0.93
VTI1BP3-201ENST00000550220 SMARCA2P51531 1590 aa20.82■□□□□ 0.92
VTI1BP3-201ENST00000550220 BAZ1AQ9NRL2 1556 aaPredicted RBP20.8■□□□□ 0.92
VTI1BP3-201ENST00000550220 SMARCA4P51532 1647 aa20.79■□□□□ 0.92
VTI1BP3-201ENST00000550220 HMGXB3Q12766 1538 aa20.73■□□□□ 0.91
VTI1BP3-201ENST00000550220 BAZ1BQ9UIG0 1483 aaKnown RBP20.67■□□□□ 0.9
VTI1BP3-201ENST00000550220 PEG3Q9GZU2 1588 aa20.65■□□□□ 0.9
VTI1BP3-201ENST00000550220 ERCC6Q03468 1493 aa20.59■□□□□ 0.89
VTI1BP3-201ENST00000550220 MROH2BQ7Z745 1585 aa20.59■□□□□ 0.89
VTI1BP3-201ENST00000550220 CUX2O14529 1486 aa20.51■□□□□ 0.87
VTI1BP3-201ENST00000550220 NESP48681 1621 aa20.43■□□□□ 0.86
VTI1BP3-201ENST00000550220 LAMC3Q9Y6N6 1575 aa20.38■□□□□ 0.85
VTI1BP3-201ENST00000550220 DNAJC5Q9H3Z4 198 aa20.38■□□□□ 0.85
VTI1BP3-201ENST00000550220 PDS5BQ9NTI5 1447 aa20.36■□□□□ 0.85
VTI1BP3-201ENST00000550220 CADPSQ9ULU8 1353 aa20.34■□□□□ 0.85
VTI1BP3-201ENST00000550220 RSF1Q96T23 1441 aaPredicted RBP20.29■□□□□ 0.84
VTI1BP3-201ENST00000550220 WIZO95785 1651 aa20.29■□□□□ 0.84
VTI1BP3-201ENST00000550220 THOC2Q8NI27 1593 aaKnown RBP20.16■□□□□ 0.82
VTI1BP3-201ENST00000550220 TOP2AP11388 1531 aaKnown RBP20.12■□□□□ 0.81
VTI1BP3-201ENST00000550220 CFTRP13569 1480 aa20.1■□□□□ 0.81
VTI1BP3-201ENST00000550220 MRC2Q9UBG0 1479 aa20.1■□□□□ 0.81
VTI1BP3-201ENST00000550220 KIF21AQ7Z4S6 1674 aa20.08■□□□□ 0.81
VTI1BP3-201ENST00000550220 CEP164Q9UPV0 1460 aa20.05■□□□□ 0.8
VTI1BP3-201ENST00000550220 FANCD2Q9BXW9 1451 aa20.04■□□□□ 0.8
VTI1BP3-201ENST00000550220 WDR62O43379 1518 aa20.01■□□□□ 0.79
VTI1BP3-201ENST00000550220 CCDC88BA6NC98 1476 aa19.92■□□□□ 0.78
VTI1BP3-201ENST00000550220 URB2Q14146 1524 aaKnown RBP19.81■□□□□ 0.76
VTI1BP3-201ENST00000550220 ABCC8Q09428 1581 aa19.74■□□□□ 0.75
VTI1BP3-201ENST00000550220 PRDM2Q13029 1718 aa19.71■□□□□ 0.75
VTI1BP3-201ENST00000550220 OSCARQ8IYS5 282 aa19.7■□□□□ 0.74
VTI1BP3-201ENST00000550220 IFT140Q96RY7 1462 aa19.68■□□□□ 0.74
VTI1BP3-201ENST00000550220 TOPBP1Q92547 1522 aa19.66■□□□□ 0.74
VTI1BP3-201ENST00000550220 DNMBPQ6XZF7 1577 aa19.58■□□□□ 0.73
VTI1BP3-201ENST00000550220 SUPT5HO00267 1087 aaKnown RBP19.55■□□□□ 0.72
VTI1BP3-201ENST00000550220 ZNF608Q9ULD9 1512 aaPredicted RBP19.53■□□□□ 0.72
VTI1BP3-201ENST00000550220 TRIM41Q8WV44 630 aa19.48■□□□□ 0.71
VTI1BP3-201ENST00000550220 POLA1P09884 1462 aaPredicted RBP19.46■□□□□ 0.71
VTI1BP3-201ENST00000550220 SOGA1O94964 1423 aa19.45■□□□□ 0.7
VTI1BP3-201ENST00000550220 AQRO60306 1485 aaKnown RBP eCLIP19.43■□□□□ 0.7
VTI1BP3-201ENST00000550220 TARBP1Q13395 1621 aaKnown RBP19.4■□□□□ 0.7
VTI1BP3-201ENST00000550220 EIF4G3O43432 1585 aaKnown RBP19.39■□□□□ 0.69
VTI1BP3-201ENST00000550220 RAD54L2Q9Y4B4 1467 aa19.37■□□□□ 0.69
VTI1BP3-201ENST00000550220 TDRD9Q8NDG6 1382 aaKnown RBP19.36■□□□□ 0.69
VTI1BP3-201ENST00000550220 FGD5Q6ZNL6 1462 aa19.35■□□□□ 0.69
VTI1BP3-201ENST00000550220 FBLN2P98095 1184 aa19.35■□□□□ 0.69
VTI1BP3-201ENST00000550220 CUX1P39880 1505 aa19.32■□□□□ 0.68
VTI1BP3-201ENST00000550220 WDR97A6NE52 1622 aa19.32■□□□□ 0.68
VTI1BP3-201ENST00000550220 CHMP7Q8WUX9 453 aaPredicted RBP19.28■□□□□ 0.68
VTI1BP3-201ENST00000550220 GRIN2BQ13224 1484 aa19.24■□□□□ 0.67
VTI1BP3-201ENST00000550220 MAGI1Q96QZ7 1491 aaPredicted RBP19.22■□□□□ 0.67
VTI1BP3-201ENST00000550220 ARHGEF11O15085 1522 aa19.21■□□□□ 0.67
VTI1BP3-201ENST00000550220 SNAPC4Q5SXM2 1469 aa19.21■□□□□ 0.67
VTI1BP3-201ENST00000550220 WRNQ14191 1432 aaPredicted RBP eCLIP19.2■□□□□ 0.66
VTI1BP3-201ENST00000550220 RIMBP3CA6NJZ7 1639 aa19.19■□□□□ 0.66
VTI1BP3-201ENST00000550220 RIMBP3BA6NNM3 1639 aa19.19■□□□□ 0.66
VTI1BP3-201ENST00000550220 RIMBP3Q9UFD9 1639 aa19.19■□□□□ 0.66
VTI1BP3-201ENST00000550220 ABCA10Q8WWZ4 1543 aa19.19■□□□□ 0.66
VTI1BP3-201ENST00000550220 GAPVD1Q14C86 1478 aa19.18■□□□□ 0.66
VTI1BP3-201ENST00000550220 CYB5RLQ6IPT4 315 aa19.17■□□□□ 0.66
VTI1BP3-201ENST00000550220 SYNJ2O15056 1496 aa19.16■□□□□ 0.66
VTI1BP3-201ENST00000550220 CHD1O14646 1710 aa19.15■□□□□ 0.66
VTI1BP3-201ENST00000550220 SYNJ1O43426 1573 aa19.1■□□□□ 0.65
VTI1BP3-201ENST00000550220 TOP2BQ02880 1626 aa19.08■□□□□ 0.65
VTI1BP3-201ENST00000550220 ABCA5Q8WWZ7 1642 aa19.04■□□□□ 0.64
VTI1BP3-201ENST00000550220 CLASP1Q7Z460 1538 aa19.04■□□□□ 0.64
VTI1BP3-201ENST00000550220 BIVM-ERCC5R4GMW8 1640 aa19.03■□□□□ 0.64
VTI1BP3-201ENST00000550220 ARAP1Q96P48 1450 aa19.03■□□□□ 0.64
VTI1BP3-201ENST00000550220 PBRM1Q86U86 1689 aa18.99■□□□□ 0.63
VTI1BP3-201ENST00000550220 FHAD1B1AJZ9 1412 aa18.98■□□□□ 0.63
VTI1BP3-201ENST00000550220 GRIN2AQ12879 1464 aa18.96■□□□□ 0.63
VTI1BP3-201ENST00000550220 ERICH3Q5RHP9 1530 aa18.95■□□□□ 0.62
VTI1BP3-201ENST00000550220 TRHP20396 242 aaPredicted RBP18.92■□□□□ 0.62
VTI1BP3-201ENST00000550220 NUP160Q12769 1436 aa18.91■□□□□ 0.62
VTI1BP3-201ENST00000550220 ADAMTS12P58397 1594 aa18.89■□□□□ 0.62
VTI1BP3-201ENST00000550220 KIF27Q86VH2 1401 aa18.83■□□□□ 0.61
VTI1BP3-201ENST00000550220 JPH4Q96JJ6 628 aa18.81■□□□□ 0.6
VTI1BP3-201ENST00000550220 CEP170Q5SW79 1584 aa18.81■□□□□ 0.6
VTI1BP3-201ENST00000550220 IGF1RP08069 1367 aa18.8■□□□□ 0.6
VTI1BP3-201ENST00000550220 AEBP2Q6ZN18 517 aaPredicted RBP18.78■□□□□ 0.6
VTI1BP3-201ENST00000550220 PRG4Q92954 1404 aaPredicted RBP18.74■□□□□ 0.59
VTI1BP3-201ENST00000550220 SHROOM2Q13796 1616 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms