RNA–Protein interactions for RNA: ENST00000550009.1

COX6A1-203, Transcript of cytochrome c oxidase subunit 6A1, humanhuman

TSL 2

Gene COX6A1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COX6A1-203ENST00000550009 NISCHQ9Y2I1 1504 aa39.74■■■■□ 3.95
COX6A1-203ENST00000550009 CCDC180Q9P1Z9 1646 aa35.52■■■■□ 3.28
COX6A1-203ENST00000550009 ABCC9O60706 1549 aa35.37■■■■□ 3.25
COX6A1-203ENST00000550009 RB1CC1Q8TDY2 1594 aa33.64■■■□□ 2.98
COX6A1-203ENST00000550009 DCAF8L2P0C7V8 631 aa33.46■■■□□ 2.95
COX6A1-203ENST00000550009 NACADO15069 1562 aa33.45■■■□□ 2.95
COX6A1-203ENST00000550009 UNC13AQ9UPW8 1703 aa33.21■■■□□ 2.91
COX6A1-203ENST00000550009 DNAJC5BQ9UF47 199 aa33.03■■■□□ 2.88
COX6A1-203ENST00000550009 ZCCHC6Q5VYS8 1495 aaKnown RBP32.99■■■□□ 2.87
COX6A1-203ENST00000550009 MYO15BQ96JP2 1530 aa32.99■■■□□ 2.87
COX6A1-203ENST00000550009 PABPN1Q86U42 306 aaKnown RBP eCLIP32.99■■■□□ 2.87
COX6A1-203ENST00000550009 BICRAQ9NZM4 1560 aa32.83■■■□□ 2.85
COX6A1-203ENST00000550009 DCAF1Q9Y4B6 1507 aa32.72■■■□□ 2.83
COX6A1-203ENST00000550009 SCRIBQ14160 1630 aa32.54■■■□□ 2.8
COX6A1-203ENST00000550009 SHROOM4Q9ULL8 1493 aa32.06■■■□□ 2.72
COX6A1-203ENST00000550009 CC2D2AQ9P2K1 1620 aa31.97■■■□□ 2.71
COX6A1-203ENST00000550009 EIF4G1Q04637 1599 aaKnown RBP31.91■■■□□ 2.7
COX6A1-203ENST00000550009 CECR2Q9BXF3 1484 aa31.74■■■□□ 2.67
COX6A1-203ENST00000550009 SMARCA4P51532 1647 aa31■■■□□ 2.55
COX6A1-203ENST00000550009 ATAD2BQ9ULI0 1458 aa30.9■■■□□ 2.54
COX6A1-203ENST00000550009 NCAPD3P42695 1498 aa30.88■■■□□ 2.53
COX6A1-203ENST00000550009 BAZ1AQ9NRL2 1556 aaPredicted RBP30.76■■■□□ 2.52
COX6A1-203ENST00000550009 SMARCA2P51531 1590 aa30.75■■■□□ 2.51
COX6A1-203ENST00000550009 MROH2BQ7Z745 1585 aa30.73■■■□□ 2.51
COX6A1-203ENST00000550009 HMGXB3Q12766 1538 aa30.69■■■□□ 2.5
COX6A1-203ENST00000550009 PEG3Q9GZU2 1588 aa30.6■■■□□ 2.49
COX6A1-203ENST00000550009 BAZ1BQ9UIG0 1483 aaKnown RBP30.59■■■□□ 2.49
COX6A1-203ENST00000550009 NESP48681 1621 aa30.53■■■□□ 2.48
COX6A1-203ENST00000550009 WIZO95785 1651 aa30.44■■■□□ 2.46
COX6A1-203ENST00000550009 ERCC6Q03468 1493 aa30.39■■■□□ 2.46
COX6A1-203ENST00000550009 CUX2O14529 1486 aa30.19■■■□□ 2.42
COX6A1-203ENST00000550009 KIF21AQ7Z4S6 1674 aa30.18■■■□□ 2.42
COX6A1-203ENST00000550009 LAMC3Q9Y6N6 1575 aa30.16■■■□□ 2.42
COX6A1-203ENST00000550009 RSF1Q96T23 1441 aaPredicted RBP30.12■■■□□ 2.41
COX6A1-203ENST00000550009 THOC2Q8NI27 1593 aaKnown RBP30.11■■■□□ 2.41
COX6A1-203ENST00000550009 CADPSQ9ULU8 1353 aa29.96■■■□□ 2.39
COX6A1-203ENST00000550009 DNAJC5Q9H3Z4 198 aa29.91■■■□□ 2.38
COX6A1-203ENST00000550009 TOP2AP11388 1531 aaKnown RBP29.91■■■□□ 2.38
COX6A1-203ENST00000550009 PDS5BQ9NTI5 1447 aa29.9■■■□□ 2.38
COX6A1-203ENST00000550009 MRC2Q9UBG0 1479 aa29.72■■■□□ 2.35
COX6A1-203ENST00000550009 CFTRP13569 1480 aa29.7■■■□□ 2.35
COX6A1-203ENST00000550009 FANCD2Q9BXW9 1451 aa29.68■■■□□ 2.34
COX6A1-203ENST00000550009 WDR62O43379 1518 aa29.66■■■□□ 2.34
COX6A1-203ENST00000550009 CEP164Q9UPV0 1460 aa29.65■■■□□ 2.34
COX6A1-203ENST00000550009 CCDC88BA6NC98 1476 aa29.61■■■□□ 2.33
COX6A1-203ENST00000550009 PRDM2Q13029 1718 aa29.59■■■□□ 2.33
COX6A1-203ENST00000550009 URB2Q14146 1524 aaKnown RBP29.5■■■□□ 2.31
COX6A1-203ENST00000550009 TOPBP1Q92547 1522 aa29.18■■■□□ 2.26
COX6A1-203ENST00000550009 ZNF608Q9ULD9 1512 aaPredicted RBP29.12■■■□□ 2.25
COX6A1-203ENST00000550009 DNMBPQ6XZF7 1577 aa29.07■■■□□ 2.24
COX6A1-203ENST00000550009 SUPT5HO00267 1087 aaKnown RBP29.04■■■□□ 2.24
COX6A1-203ENST00000550009 IFT140Q96RY7 1462 aa29.01■■■□□ 2.23
COX6A1-203ENST00000550009 TARBP1Q13395 1621 aaKnown RBP28.95■■■□□ 2.23
COX6A1-203ENST00000550009 EIF4G3O43432 1585 aaKnown RBP28.94■■■□□ 2.22
COX6A1-203ENST00000550009 ABCC8Q09428 1581 aa28.94■■■□□ 2.22
COX6A1-203ENST00000550009 POLA1P09884 1462 aaPredicted RBP28.9■■■□□ 2.22
COX6A1-203ENST00000550009 RAD54L2Q9Y4B4 1467 aa28.86■■■□□ 2.21
COX6A1-203ENST00000550009 AQRO60306 1485 aaKnown RBP eCLIP28.85■■■□□ 2.215e-11■■■■□ 21.6
COX6A1-203ENST00000550009 OSCARQ8IYS5 282 aa28.85■■■□□ 2.21
COX6A1-203ENST00000550009 CUX1P39880 1505 aa28.84■■■□□ 2.21
COX6A1-203ENST00000550009 TRIM41Q8WV44 630 aa28.82■■■□□ 2.2
COX6A1-203ENST00000550009 CHD1O14646 1710 aa28.77■■■□□ 2.2
COX6A1-203ENST00000550009 FGD5Q6ZNL6 1462 aa28.77■■■□□ 2.2
COX6A1-203ENST00000550009 SOGA1O94964 1423 aa28.72■■■□□ 2.19
COX6A1-203ENST00000550009 TDRD9Q8NDG6 1382 aaKnown RBP28.7■■■□□ 2.18
COX6A1-203ENST00000550009 RIMBP3CA6NJZ7 1639 aa28.65■■■□□ 2.18
COX6A1-203ENST00000550009 RIMBP3BA6NNM3 1639 aa28.65■■■□□ 2.18
COX6A1-203ENST00000550009 RIMBP3Q9UFD9 1639 aa28.65■■■□□ 2.18
COX6A1-203ENST00000550009 WDR97A6NE52 1622 aa28.64■■■□□ 2.18
COX6A1-203ENST00000550009 SNAPC4Q5SXM2 1469 aa28.54■■■□□ 2.16
COX6A1-203ENST00000550009 FBLN2P98095 1184 aa28.54■■■□□ 2.16
COX6A1-203ENST00000550009 PBRM1Q86U86 1689 aa28.51■■■□□ 2.15
COX6A1-203ENST00000550009 ARHGEF11O15085 1522 aa28.5■■■□□ 2.15
COX6A1-203ENST00000550009 SYNJ1O43426 1573 aa28.46■■■□□ 2.15
COX6A1-203ENST00000550009 BIVM-ERCC5R4GMW8 1640 aa28.43■■■□□ 2.14
COX6A1-203ENST00000550009 ABCA5Q8WWZ7 1642 aa28.41■■■□□ 2.14
COX6A1-203ENST00000550009 GRIN2BQ13224 1484 aa28.4■■■□□ 2.14
COX6A1-203ENST00000550009 ABCA10Q8WWZ4 1543 aa28.39■■■□□ 2.14
COX6A1-203ENST00000550009 TOP2BQ02880 1626 aa28.39■■■□□ 2.13
COX6A1-203ENST00000550009 GAPVD1Q14C86 1478 aa28.39■■■□□ 2.13
COX6A1-203ENST00000550009 MAGI1Q96QZ7 1491 aaPredicted RBP28.36■■■□□ 2.13
COX6A1-203ENST00000550009 WRNQ14191 1432 aaPredicted RBP eCLIP28.35■■■□□ 2.13
COX6A1-203ENST00000550009 CLASP1Q7Z460 1538 aa28.32■■■□□ 2.12
COX6A1-203ENST00000550009 CHMP7Q8WUX9 453 aaPredicted RBP28.3■■■□□ 2.12
COX6A1-203ENST00000550009 SYNJ2O15056 1496 aa28.28■■■□□ 2.12
COX6A1-203ENST00000550009 ARAP1Q96P48 1450 aa28.28■■■□□ 2.12
COX6A1-203ENST00000550009 CYB5RLQ6IPT4 315 aa28.26■■■□□ 2.11
COX6A1-203ENST00000550009 ADAMTS12P58397 1594 aa28.17■■■□□ 2.1
COX6A1-203ENST00000550009 GRIN2AQ12879 1464 aa28.08■■■□□ 2.09
COX6A1-203ENST00000550009 CEP170Q5SW79 1584 aa28.08■■■□□ 2.09
COX6A1-203ENST00000550009 ERCC6L2Q5T890 1561 aa28.06■■■□□ 2.08
COX6A1-203ENST00000550009 ERICH3Q5RHP9 1530 aa28.02■■■□□ 2.08
COX6A1-203ENST00000550009 FHAD1B1AJZ9 1412 aa27.99■■■□□ 2.07
COX6A1-203ENST00000550009 NUP160Q12769 1436 aa27.97■■■□□ 2.07
COX6A1-203ENST00000550009 SHROOM2Q13796 1616 aa27.88■■■□□ 2.05
COX6A1-203ENST00000550009 TRHP20396 242 aaPredicted RBP27.83■■■□□ 2.05
COX6A1-203ENST00000550009 IGF1RP08069 1367 aa27.77■■■□□ 2.04
COX6A1-203ENST00000550009 RUSC2Q8N2Y8 1516 aa27.77■■■□□ 2.04
COX6A1-203ENST00000550009 KIF27Q86VH2 1401 aa27.73■■■□□ 2.03
COX6A1-203ENST00000550009 CUL7Q14999 1698 aa27.7■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms