RNA–Protein interactions for RNA: ENST00000549891.5

TROAP-211, Transcript of trophinin associated protein, humanhuman

TSL 1 (best)

Gene TROAP, Length 932 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TROAP-211ENST00000549891 NISCHQ9Y2I1 1504 aa34.13■■■■□ 3.05
TROAP-211ENST00000549891 CCDC180Q9P1Z9 1646 aa30.75■■■□□ 2.51
TROAP-211ENST00000549891 ABCC9O60706 1549 aa30.73■■■□□ 2.51
TROAP-211ENST00000549891 RB1CC1Q8TDY2 1594 aa29.29■■■□□ 2.28
TROAP-211ENST00000549891 NACADO15069 1562 aa29.06■■■□□ 2.24
TROAP-211ENST00000549891 DNAJC5BQ9UF47 199 aa28.83■■■□□ 2.21
TROAP-211ENST00000549891 DCAF8L2P0C7V8 631 aa28.82■■■□□ 2.2
TROAP-211ENST00000549891 MYO15BQ96JP2 1530 aa28.64■■■□□ 2.17
TROAP-211ENST00000549891 UNC13AQ9UPW8 1703 aa28.63■■■□□ 2.17
TROAP-211ENST00000549891 PABPN1Q86U42 306 aaKnown RBP eCLIP28.56■■■□□ 2.16
TROAP-211ENST00000549891 BICRAQ9NZM4 1560 aa28.37■■■□□ 2.13
TROAP-211ENST00000549891 ZCCHC6Q5VYS8 1495 aaKnown RBP28.26■■■□□ 2.11
TROAP-211ENST00000549891 DCAF1Q9Y4B6 1507 aa28.23■■■□□ 2.11
TROAP-211ENST00000549891 SHROOM4Q9ULL8 1493 aa28.08■■■□□ 2.09
TROAP-211ENST00000549891 SCRIBQ14160 1630 aa27.94■■■□□ 2.06
TROAP-211ENST00000549891 CC2D2AQ9P2K1 1620 aa27.79■■■□□ 2.04
TROAP-211ENST00000549891 CECR2Q9BXF3 1484 aa27.71■■■□□ 2.03
TROAP-211ENST00000549891 EIF4G1Q04637 1599 aaKnown RBP27.71■■■□□ 2.03
TROAP-211ENST00000549891 NCAPD3P42695 1498 aa26.79■■□□□ 1.88
TROAP-211ENST00000549891 ATAD2BQ9ULI0 1458 aa26.68■■□□□ 1.86
TROAP-211ENST00000549891 SMARCA2P51531 1590 aa26.67■■□□□ 1.86
TROAP-211ENST00000549891 SMARCA4P51532 1647 aa26.66■■□□□ 1.86
TROAP-211ENST00000549891 HMGXB3Q12766 1538 aa26.62■■□□□ 1.85
TROAP-211ENST00000549891 DNAJC5Q9H3Z4 198 aa26.62■■□□□ 1.85
TROAP-211ENST00000549891 ERCC6Q03468 1493 aa26.6■■□□□ 1.85
TROAP-211ENST00000549891 CUX2O14529 1486 aa26.59■■□□□ 1.85
TROAP-211ENST00000549891 BAZ1AQ9NRL2 1556 aaPredicted RBP26.54■■□□□ 1.84
TROAP-211ENST00000549891 BAZ1BQ9UIG0 1483 aaKnown RBP26.45■■□□□ 1.82
TROAP-211ENST00000549891 PEG3Q9GZU2 1588 aa26.41■■□□□ 1.82
TROAP-211ENST00000549891 NESP48681 1621 aa26.35■■□□□ 1.81
TROAP-211ENST00000549891 MROH2BQ7Z745 1585 aa26.26■■□□□ 1.79
TROAP-211ENST00000549891 LAMC3Q9Y6N6 1575 aa26.25■■□□□ 1.79
TROAP-211ENST00000549891 THOC2Q8NI27 1593 aaKnown RBP26.16■■□□□ 1.78
TROAP-211ENST00000549891 PDS5BQ9NTI5 1447 aa26.09■■□□□ 1.77
TROAP-211ENST00000549891 KIF21AQ7Z4S6 1674 aa26.09■■□□□ 1.77
TROAP-211ENST00000549891 WIZO95785 1651 aa25.97■■□□□ 1.75
TROAP-211ENST00000549891 CADPSQ9ULU8 1353 aa25.96■■□□□ 1.75
TROAP-211ENST00000549891 MRC2Q9UBG0 1479 aa25.85■■□□□ 1.73
TROAP-211ENST00000549891 WDR62O43379 1518 aa25.79■■□□□ 1.72
TROAP-211ENST00000549891 CEP164Q9UPV0 1460 aa25.73■■□□□ 1.71
TROAP-211ENST00000549891 RSF1Q96T23 1441 aaPredicted RBP25.69■■□□□ 1.7
TROAP-211ENST00000549891 FANCD2Q9BXW9 1451 aa25.67■■□□□ 1.7
TROAP-211ENST00000549891 CFTRP13569 1480 aa25.66■■□□□ 1.7
TROAP-211ENST00000549891 TOP2AP11388 1531 aaKnown RBP25.65■■□□□ 1.7
TROAP-211ENST00000549891 PRDM2Q13029 1718 aa25.5■■□□□ 1.67
TROAP-211ENST00000549891 URB2Q14146 1524 aaKnown RBP25.44■■□□□ 1.66
TROAP-211ENST00000549891 TRIM41Q8WV44 630 aa25.4■■□□□ 1.66
TROAP-211ENST00000549891 OSCARQ8IYS5 282 aa25.34■■□□□ 1.65
TROAP-211ENST00000549891 CCDC88BA6NC98 1476 aa25.33■■□□□ 1.65
TROAP-211ENST00000549891 IFT140Q96RY7 1462 aa25.22■■□□□ 1.63
TROAP-211ENST00000549891 ABCC8Q09428 1581 aa25.18■■□□□ 1.62
TROAP-211ENST00000549891 TOPBP1Q92547 1522 aa25.17■■□□□ 1.62
TROAP-211ENST00000549891 ZNF608Q9ULD9 1512 aaPredicted RBP25.13■■□□□ 1.61
TROAP-211ENST00000549891 DNMBPQ6XZF7 1577 aa25.1■■□□□ 1.61
TROAP-211ENST00000549891 EIF4G3O43432 1585 aaKnown RBP25.05■■□□□ 1.6
TROAP-211ENST00000549891 RIMBP3CA6NJZ7 1639 aa25.01■■□□□ 1.59
TROAP-211ENST00000549891 RIMBP3BA6NNM3 1639 aa25.01■■□□□ 1.59
TROAP-211ENST00000549891 RIMBP3Q9UFD9 1639 aa25.01■■□□□ 1.59
TROAP-211ENST00000549891 TARBP1Q13395 1621 aaKnown RBP24.97■■□□□ 1.59
TROAP-211ENST00000549891 ARHGEF11O15085 1522 aa24.91■■□□□ 1.58
TROAP-211ENST00000549891 POLA1P09884 1462 aaPredicted RBP24.9■■□□□ 1.58
TROAP-211ENST00000549891 CHD1O14646 1710 aa24.9■■□□□ 1.58
TROAP-211ENST00000549891 AQRO60306 1485 aaKnown RBP eCLIP24.89■■□□□ 1.581e-7■■■■■ 63.9
TROAP-211ENST00000549891 SOGA1O94964 1423 aa24.8■■□□□ 1.56
TROAP-211ENST00000549891 WDR97A6NE52 1622 aa24.79■■□□□ 1.56
TROAP-211ENST00000549891 RAD54L2Q9Y4B4 1467 aa24.78■■□□□ 1.56
TROAP-211ENST00000549891 FBLN2P98095 1184 aa24.78■■□□□ 1.56
TROAP-211ENST00000549891 FGD5Q6ZNL6 1462 aa24.74■■□□□ 1.55
TROAP-211ENST00000549891 TDRD9Q8NDG6 1382 aaKnown RBP24.73■■□□□ 1.55
TROAP-211ENST00000549891 CYB5RLQ6IPT4 315 aa24.72■■□□□ 1.55
TROAP-211ENST00000549891 CUX1P39880 1505 aa24.69■■□□□ 1.54
TROAP-211ENST00000549891 SNAPC4Q5SXM2 1469 aa24.67■■□□□ 1.54
TROAP-211ENST00000549891 ARAP1Q96P48 1450 aa24.64■■□□□ 1.54
TROAP-211ENST00000549891 MAGI1Q96QZ7 1491 aaPredicted RBP24.64■■□□□ 1.54
TROAP-211ENST00000549891 CHMP7Q8WUX9 453 aaPredicted RBP24.61■■□□□ 1.53
TROAP-211ENST00000549891 GRIN2BQ13224 1484 aa24.61■■□□□ 1.53
TROAP-211ENST00000549891 SYNJ1O43426 1573 aa24.6■■□□□ 1.53
TROAP-211ENST00000549891 CLASP1Q7Z460 1538 aa24.57■■□□□ 1.52
TROAP-211ENST00000549891 SYNJ2O15056 1496 aa24.55■■□□□ 1.52
TROAP-211ENST00000549891 PBRM1Q86U86 1689 aa24.55■■□□□ 1.52
TROAP-211ENST00000549891 GAPVD1Q14C86 1478 aa24.51■■□□□ 1.51
TROAP-211ENST00000549891 TRHP20396 242 aaPredicted RBP24.51■■□□□ 1.51
TROAP-211ENST00000549891 ABCA10Q8WWZ4 1543 aa24.47■■□□□ 1.51
TROAP-211ENST00000549891 SUPT5HO00267 1087 aaKnown RBP24.47■■□□□ 1.51
TROAP-211ENST00000549891 ABCA5Q8WWZ7 1642 aa24.45■■□□□ 1.5
TROAP-211ENST00000549891 WRNQ14191 1432 aaPredicted RBP eCLIP24.37■■□□□ 1.49
TROAP-211ENST00000549891 BIVM-ERCC5R4GMW8 1640 aa24.33■■□□□ 1.49
TROAP-211ENST00000549891 TOP2BQ02880 1626 aa24.32■■□□□ 1.48
TROAP-211ENST00000549891 GRIN2AQ12879 1464 aa24.29■■□□□ 1.48
TROAP-211ENST00000549891 ADAMTS12P58397 1594 aa24.27■■□□□ 1.48
TROAP-211ENST00000549891 FHAD1B1AJZ9 1412 aa24.2■■□□□ 1.46
TROAP-211ENST00000549891 NUP160Q12769 1436 aa24.2■■□□□ 1.46
TROAP-211ENST00000549891 CEP170Q5SW79 1584 aa24.2■■□□□ 1.46
TROAP-211ENST00000549891 ERICH3Q5RHP9 1530 aa24.19■■□□□ 1.46
TROAP-211ENST00000549891 SHROOM2Q13796 1616 aa24.13■■□□□ 1.45
TROAP-211ENST00000549891 ERCC6L2Q5T890 1561 aa24.13■■□□□ 1.45
TROAP-211ENST00000549891 PRG4Q92954 1404 aaPredicted RBP23.97■■□□□ 1.43
TROAP-211ENST00000549891 JPH4Q96JJ6 628 aa23.95■■□□□ 1.42
TROAP-211ENST00000549891 RUSC2Q8N2Y8 1516 aa23.93■■□□□ 1.42
TROAP-211ENST00000549891 AEBP2Q6ZN18 517 aaPredicted RBP23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms